Bnascaffold846T0000100WE-P (polypeptide) Brassica napus Westar

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Bnascaffold846T0000100WE
Unique Name	Bnascaffold846T0000100WE-P
Type	polypeptide
Organism	Brassica napus Westar (cv. Westar, rapeseed)
Sequence length	174

Homology

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BLAST of Bnascaffold846T0000100WE vs. GenBank_protein
Match: XP_033147239.1 (uncharacterized protein LOC103868417 [Brassica rapa])

HSP 1 Score: 301 bits (771), Expect = 1.010e-98
Identity = 144/173 (83.24%), Postives = 159/173 (91.91%), Query Frame = 0

Query:    1 MKDLGKTKFCLGLQLEYMKDGILVHQKAYTEKVLKRFNMDQSHPLTSPMVVRSLGPDTDPFGPKKKNEEVLGPEVPYLSAIGALMYLAGHTQPDISFAVNLLSRFSSCPTRRHWNEIKHILHYLQGTKDLGLMFTNKSKEDLVGFVDAGYLSDPHYARSQTGYVFTHGGTAIS 173
            MKDLGKTK CLGLQLEY+K GILVHQKAYTEKVLKRFNMDQ+HPLTSPMVVRSLG DTDPF PK+ +E VLGPEVPYLSAIGAL+YLA HT+PDI FAVNLL+ FSSCPT+R+WN IKHIL YLQGTKDLGL +TN++K+ LVGF DAGYLSDPH+ARSQTGYVFT+GGTAIS
Sbjct:  121 MKDLGKTKVCLGLQLEYIKGGILVHQKAYTEKVLKRFNMDQAHPLTSPMVVRSLGVDTDPFRPKEDDENVLGPEVPYLSAIGALLYLASHTRPDICFAVNLLAHFSSCPTQRYWNGIKHILRYLQGTKDLGLFYTNETKDGLVGFADAGYLSDPHHARSQTGYVFTYGGTAIS 293

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BLAST of Bnascaffold846T0000100WE vs. GenBank_protein
Match: CAA7051314.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 284 bits (726), Expect = 3.970e-94
Identity = 136/173 (78.61%), Postives = 153/173 (88.44%), Query Frame = 0

Query:    1 MKDLGKTKFCLGLQLEYMKDGILVHQKAYTEKVLKRFNMDQSHPLTSPMVVRSLGPDTDPFGPKKKNEEVLGPEVPYLSAIGALMYLAGHTQPDISFAVNLLSRFSSCPTRRHWNEIKHILHYLQGTKDLGLMFTNKSKEDLVGFVDAGYLSDPHYARSQTGYVFTHGGTAIS 173
            MKDLGKTKFCLGLQ+E++ DGIL+HQ AYTEK+LK+F MDQSHPL+SPM+VRSL     PF P+K +EEV+GPEVPYLSAIGALMYLA HT+PDISFAVNLL+RFSSCPTRRHWN +KHI  YLQGTKD+GL F+N  KEDL+GF DAGYLSDPH ARSQTGYVFT GGTAIS
Sbjct:    1 MKDLGKTKFCLGLQIEHLVDGILLHQMAYTEKILKKFFMDQSHPLSSPMIVRSLDVK-GPFRPRKNDEEVIGPEVPYLSAIGALMYLASHTRPDISFAVNLLARFSSCPTRRHWNGVKHIFRYLQGTKDMGLFFSNTCKEDLIGFADAGYLSDPHTARSQTGYVFTCGGTAIS 172

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BLAST of Bnascaffold846T0000100WE vs. GenBank_protein
Match: XP_033140527.1 (uncharacterized protein LOC103854542 isoform X1 [Brassica rapa] >XP_033140528.1 uncharacterized protein LOC103854542 isoform X1 [Brassica rapa])

HSP 1 Score: 291 bits (745), Expect = 2.410e-89
Identity = 137/173 (79.19%), Postives = 156/173 (90.17%), Query Frame = 0

Query:    1 MKDLGKTKFCLGLQLEYMKDGILVHQKAYTEKVLKRFNMDQSHPLTSPMVVRSLGPDTDPFGPKKKNEEVLGPEVPYLSAIGALMYLAGHTQPDISFAVNLLSRFSSCPTRRHWNEIKHILHYLQGTKDLGLMFTNKSKEDLVGFVDAGYLSDPHYARSQTGYVFTHGGTAIS 173
            MKDLGKT+FCLGLQ+E++K+GIL+HQ+ YTEKV KRF+MDQ+HPL+SPMVVRSL  + DPF P++KNEEVLGPEVPYLSAIGALMYLA HT+PDISFAVNLL+RFSSCPT RHWN IKHIL YLQGTKD+G+ F N S EDL+GF DAGY+SDPH ARSQTGYVFT GGTAIS
Sbjct:  687 MKDLGKTRFCLGLQIEHLKNGILLHQQTYTEKVAKRFSMDQAHPLSSPMVVRSLDVNKDPFRPREKNEEVLGPEVPYLSAIGALMYLASHTRPDISFAVNLLARFSSCPTHRHWNGIKHILRYLQGTKDMGIFFPNPSAEDLIGFADAGYMSDPHNARSQTGYVFTCGGTAIS 859

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BLAST of Bnascaffold846T0000100WE vs. GenBank_protein
Match: AQY61293.1 (Gag-Pol [Arabidopsis thaliana])

HSP 1 Score: 291 bits (746), Expect = 7.780e-88
Identity = 139/173 (80.35%), Postives = 153/173 (88.44%), Query Frame = 0

Query:    1 MKDLGKTKFCLGLQLEYMKDGILVHQKAYTEKVLKRFNMDQSHPLTSPMVVRSLGPDTDPFGPKKKNEEVLGPEVPYLSAIGALMYLAGHTQPDISFAVNLLSRFSSCPTRRHWNEIKHILHYLQGTKDLGLMFTNKSKEDLVGFVDAGYLSDPHYARSQTGYVFTHGGTAIS 173
            MKDLGKTKFCLGLQLEY+  GILVHQ+AYTE VLKRFNMD++HPLTSPM VRSLG D+DPFGPKK +EE+LGPEV YLSAIGALMYL+ HT+PDI FAVNLLSRFSSCPT+RHW  IKH+L YLQGT D GL +TN +KE LVGF DAGYLSDPH  +SQTGYVFTHGGTAIS
Sbjct: 1246 MKDLGKTKFCLGLQLEYVDKGILVHQRAYTETVLKRFNMDKAHPLTSPMQVRSLGLDSDPFGPKKDDEEILGPEVSYLSAIGALMYLSSHTRPDICFAVNLLSRFSSCPTKRHWEGIKHLLRYLQGTIDFGLYYTNHNKEGLVGFADAGYLSDPHNGKSQTGYVFTHGGTAIS 1418

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BLAST of Bnascaffold846T0000100WE vs. GenBank_protein
Match: XP_035840146.1 (secreted RxLR effector protein 161-like [Helianthus annuus])

HSP 1 Score: 263 bits (671), Expect = 6.270e-87
Identity = 126/173 (72.83%), Postives = 147/173 (84.97%), Query Frame = 0

Query:    1 MKDLGKTKFCLGLQLEYMKDGILVHQKAYTEKVLKRFNMDQSHPLTSPMVVRSLGPDTDPFGPKKKNEEVLGPEVPYLSAIGALMYLAGHTQPDISFAVNLLSRFSSCPTRRHWNEIKHILHYLQGTKDLGLMFTNKSKEDLVGFVDAGYLSDPHYARSQTGYVFTHGGTAIS 173
            MKDLGKTK+CLGLQ+E+M +GILVHQ  YTEK+LKRFN+D+++PL++PMVVRSL  + DPF P + NEEVLGPEVPYLSAIGALMYL   T+PDISFAV LL+RFSS PT+RHWN IKHI  YL+GT DLGL + N SKE LVG+ DAGYLSDPH A+SQTGYVF +GGT IS
Sbjct:    1 MKDLGKTKYCLGLQIEHMSNGILVHQTNYTEKLLKRFNIDKANPLSTPMVVRSLNVENDPFHPCEDNEEVLGPEVPYLSAIGALMYLTNCTRPDISFAVKLLARFSSAPTKRHWNGIKHIFRYLRGTVDLGLFYPNDSKEGLVGYADAGYLSDPHKAKSQTGYVFMNGGTVIS 173

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BLAST of Bnascaffold846T0000100WE vs. GenBank_protein
Match: KAD2803914.1 (hypothetical protein E3N88_37291 [Mikania micrantha])

HSP 1 Score: 267 bits (683), Expect = 2.340e-84
Identity = 127/173 (73.41%), Postives = 147/173 (84.97%), Query Frame = 0

Query:    1 MKDLGKTKFCLGLQLEYMKDGILVHQKAYTEKVLKRFNMDQSHPLTSPMVVRSLGPDTDPFGPKKKNEEVLGPEVPYLSAIGALMYLAGHTQPDISFAVNLLSRFSSCPTRRHWNEIKHILHYLQGTKDLGLMFTNKSKEDLVGFVDAGYLSDPHYARSQTGYVFTHGGTAIS 173
            MKDLGKTK+CLGLQ+EY+ +GILVHQ  YTEK+LKRFNMD+++PL++PMVVRSL  D DPF P + NEEV GPE+PYLSAIGALMYL   T+PDISFAVNL +RFSS PT+RHWN IKHI  YL+GT DLGL + N SKE LVG+ DAGYLSDPH A+SQTGYVF +GGTAIS
Sbjct:  211 MKDLGKTKYCLGLQIEYLNNGILVHQSTYTEKLLKRFNMDKANPLSTPMVVRSLNVDNDPFRPCEDNEEVFGPEIPYLSAIGALMYLTNCTRPDISFAVNLQARFSSAPTKRHWNGIKHIFRYLRGTIDLGLFYPNNSKEGLVGYADAGYLSDPHKAKSQTGYVFINGGTAIS 383

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BLAST of Bnascaffold846T0000100WE vs. GenBank_protein
Match: KYP58720.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 265 bits (676), Expect = 2.390e-84
Identity = 124/173 (71.68%), Postives = 152/173 (87.86%), Query Frame = 0

Query:    1 MKDLGKTKFCLGLQLEYMKDGILVHQKAYTEKVLKRFNMDQSHPLTSPMVVRSLGPDTDPFGPKKKNEEVLGPEVPYLSAIGALMYLAGHTQPDISFAVNLLSRFSSCPTRRHWNEIKHILHYLQGTKDLGLMFTNKSKEDLVGFVDAGYLSDPHYARSQTGYVFTHGGTAIS 173
            MKDLG+TKFCLGLQ+EY+++GILVHQ+AY  KVLKRF MD+SHPL +PMVVRSL  + DPF P++K+EE+LGPEVPYLSAIGALMYLA +T+PDI+FAVNLL+R+SS PTRRHWN +K IL YL+GT D+GL+++N SK +L G+ DAGYLSDPH  +SQTGY+FT GGTAIS
Sbjct:  117 MKDLGRTKFCLGLQVEYLENGILVHQEAYITKVLKRFYMDKSHPLCTPMVVRSLDVNKDPFRPQEKDEEILGPEVPYLSAIGALMYLANYTRPDIAFAVNLLARYSSSPTRRHWNGVKQILRYLRGTMDMGLLYSNVSKPELNGYADAGYLSDPHNGKSQTGYLFTSGGTAIS 289

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BLAST of Bnascaffold846T0000100WE vs. GenBank_protein
Match: AQY61295.1 (Pol [Coffea arabica])

HSP 1 Score: 275 bits (704), Expect = 9.220e-83
Identity = 131/173 (75.72%), Postives = 152/173 (87.86%), Query Frame = 0

Query:    1 MKDLGKTKFCLGLQLEYMKDGILVHQKAYTEKVLKRFNMDQSHPLTSPMVVRSLGPDTDPFGPKKKNEEVLGPEVPYLSAIGALMYLAGHTQPDISFAVNLLSRFSSCPTRRHWNEIKHILHYLQGTKDLGLMFTNKSKEDLVGFVDAGYLSDPHYARSQTGYVFTHGGTAIS 173
            +KD GKTKFCLGLQ+E++K GI VHQ AYT KVLKRF MD++H L++PMVVRSL P+ DPF P+++NEE+LGPEVPYLSAIGALMYLA  T+PDISFAVNLL+RFSS PTRRHWN IKHI  YLQGT DLGL ++NKSK +LVG+ DAGYLSDPH ARSQTGY+FT+GGTAIS
Sbjct:  853 IKDFGKTKFCLGLQIEHLKGGIFVHQTAYTRKVLKRFYMDKAHTLSTPMVVRSLDPNKDPFRPREENEEILGPEVPYLSAIGALMYLANCTRPDISFAVNLLARFSSSPTRRHWNGIKHIFRYLQGTIDLGLFYSNKSKPELVGYADAGYLSDPHKARSQTGYLFTYGGTAIS 1025

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BLAST of Bnascaffold846T0000100WE vs. GenBank_protein
Match: AQY61297.1 (Pol [Coffea canephora])

HSP 1 Score: 273 bits (699), Expect = 1.640e-82
Identity = 130/173 (75.14%), Postives = 152/173 (87.86%), Query Frame = 0

Query:    1 MKDLGKTKFCLGLQLEYMKDGILVHQKAYTEKVLKRFNMDQSHPLTSPMVVRSLGPDTDPFGPKKKNEEVLGPEVPYLSAIGALMYLAGHTQPDISFAVNLLSRFSSCPTRRHWNEIKHILHYLQGTKDLGLMFTNKSKEDLVGFVDAGYLSDPHYARSQTGYVFTHGGTAIS 173
            +KD GKTKFCLGLQ+E++K GI VHQ AYT KVLKRF MD++H L++PMVVRSL P+ DPF P+++NEE+LGPEVPYLSAIGALMYLA  T+PDISFAVNLL+RFSS PTRRHWN IKHI  YLQGT DLGL ++NKSK +LVG+ DAGYLS+PH ARSQTGY+FT+GGTAIS
Sbjct:  738 IKDFGKTKFCLGLQIEHLKGGIFVHQTAYTRKVLKRFYMDKAHTLSTPMVVRSLDPNKDPFRPREENEEILGPEVPYLSAIGALMYLANCTRPDISFAVNLLARFSSSPTRRHWNGIKHIFRYLQGTIDLGLFYSNKSKPELVGYTDAGYLSNPHKARSQTGYLFTYGGTAIS 910

[Close]

BLAST of Bnascaffold846T0000100WE vs. GenBank_protein
Match: AQY61300.1 (Pol [Coffea eugenioides])

HSP 1 Score: 273 bits (697), Expect = 8.860e-82
Identity = 130/173 (75.14%), Postives = 151/173 (87.28%), Query Frame = 0

Query:    1 MKDLGKTKFCLGLQLEYMKDGILVHQKAYTEKVLKRFNMDQSHPLTSPMVVRSLGPDTDPFGPKKKNEEVLGPEVPYLSAIGALMYLAGHTQPDISFAVNLLSRFSSCPTRRHWNEIKHILHYLQGTKDLGLMFTNKSKEDLVGFVDAGYLSDPHYARSQTGYVFTHGGTAIS 173
            +KD GKTKFCLGLQ+E++K GI VHQ AYT KVLKRF MD++H L++PMVVRSL P+ DPF P+++NEE+LGPEVPYLSAIG LMYLA  T+PDISFAVNLL+RFSS PTRRHWN IKHI  YLQGT DLGL ++NKSK +LVG+ DAGYLSDPH ARSQTGY+FT+GGTAIS
Sbjct:  853 IKDFGKTKFCLGLQIEHLKGGIFVHQTAYTLKVLKRFYMDKAHTLSTPMVVRSLDPNKDPFRPREENEEILGPEVPYLSAIGVLMYLANCTRPDISFAVNLLARFSSSPTRRHWNGIKHIFRYLQGTIDLGLFYSNKSKPELVGYADAGYLSDPHKARSQTGYLFTYGGTAIS 1025

The following BLAST results are available for this feature:

BLAST of Bnascaffold846T0000100WE vs. GenBank_protein

BLAST of Bnascaffold846T0000100WE vs. GenBank_protein
Analysis Date: 2022-04-13 (Diamond on OGS1.0 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
XP_033147239.1	1.010e-98	83.24	uncharacterized protein LOC103868417 [Brassica rap...	[more]
CAA7051314.1	3.970e-94	78.61	unnamed protein product [Microthlaspi erraticum]	[more]
XP_033140527.1	2.410e-89	79.19	uncharacterized protein LOC103854542 isoform X1 [B...	[more]
AQY61293.1	7.780e-88	80.35	Gag-Pol [Arabidopsis thaliana]	[more]
XP_035840146.1	6.270e-87	72.83	secreted RxLR effector protein 161-like [Helianthu...	[more]
KAD2803914.1	2.340e-84	73.41	hypothetical protein E3N88_37291 [Mikania micranth...	[more]
KYP58720.1	2.390e-84	71.68	Retrovirus-related Pol polyprotein from transposon...	[more]
AQY61295.1	9.220e-83	75.72	Pol [Coffea arabica]	[more]
AQY61297.1	1.640e-82	75.14	Pol [Coffea canephora]	[more]
AQY61300.1	8.860e-82	75.14	Pol [Coffea eugenioides]	[more]

Pages

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding

InterPro

Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-04-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 59..166
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 59..166

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold846	contig	scaffold846:3274..3795 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
Interproscan on OGS1.0	2022-04-13 .72417
Blast2go on OGS1.0	2022-04-13 .735315
Diamond on OGS1.0 vs NR	2022-04-13 .782894
Brassica napus Westar OGS1.0	2022-04-13 .642364

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Bnascaffold846T0000100WE	Bnascaffold846T0000100WE	Brassica napus Westar	mRNA	scaffold846 3274..3795 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Bnascaffold846T0000100WE-P ID=Bnascaffold846T0000100WE-P|Name=Bnascaffold846T0000100WE|organism=Brassica napus Westar|type=polypeptide|length=174bp
MKDLGKTKFCLGLQLEYMKDGILVHQKAYTEKVLKRFNMDQSHPLTSPMV
VRSLGPDTDPFGPKKKNEEVLGPEVPYLSAIGALMYLAGHTQPDISFAVN
LLSRFSSCPTRRHWNEIKHILHYLQGTKDLGLMFTNKSKEDLVGFVDAGY
LSDPHYARSQTGYVFTHGGTAIS.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **Biological Process**
Term	Definition
GO:0090305	nucleic acid phosphodiester bond hydrolysis
GO:0015074	DNA integration
GO:0006508	proteolysis
GO:0006278	RNA-dependent DNA biosynthetic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0004519	endonuclease activity
GO:0004190	aspartic-type endopeptidase activity
GO:0003964	RNA-directed DNA polymerase activity
GO:0003676	nucleic acid binding

Orthology

View orthology data for Bnascaffold846T0000100WE-P