Bnascaffold789T0000100WE-P (polypeptide) Brassica napus Westar

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBnascaffold789T0000100WE
Unique NameBnascaffold789T0000100WE-P
Typepolypeptide
OrganismBrassica napus Westar (cv. Westar, rapeseed)
Sequence length70
Homology
BLAST of Bnascaffold789T0000100WE vs. GenBank_protein
Match: VDC97062.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 139 bits (351), Expect = 1.350e-41
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 0
Query:    1 MERCYKKGEAQMVVKLTGVLLLNIASTRRRSQPGLGSGVPIQEGAQTKTEHSWLCEEEGYSIKAASIVR 69
            MERCYKKGEA MVVKLTGVLLLNIASTRRRSQPGLGSGVPIQEGAQTKTEHSWLCEEEGYSIKAASIVR
Sbjct:    1 MERCYKKGEAHMVVKLTGVLLLNIASTRRRSQPGLGSGVPIQEGAQTKTEHSWLCEEEGYSIKAASIVR 69          
BLAST of Bnascaffold789T0000100WE vs. GenBank_protein
Match: KAG5373883.1 (hypothetical protein IGI04_042800, partial [Brassica rapa subsp. trilocularis])

HSP 1 Score: 136 bits (342), Expect = 1.760e-38
Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 0
Query:    1 MERCYKKGEAQMVVKLTGVLLLNIASTRRRSQPGLGSGVPIQEGAQTKTEHSWLCEEEGYSIKAASIV 68
            MERCYKKGEA MVVKLTGVLLLNIASTRRRSQPGLGSGVPIQEGAQTKTEHSWLCEEEGYSIKA SIV
Sbjct:    8 MERCYKKGEAHMVVKLTGVLLLNIASTRRRSQPGLGSGVPIQEGAQTKTEHSWLCEEEGYSIKAVSIV 75          
BLAST of Bnascaffold789T0000100WE vs. GenBank_protein
Match: KAG5374178.1 (hypothetical protein IGI04_042510 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 117 bits (294), Expect = 4.580e-32
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0
Query:   12 MVVKLTGVLLLNIASTRRRSQPGLGSGVPIQEGAQTKTEHSWLCEEEGYSIKAASIVR 69
            MVVKLTGVLLLNIASTRRRSQPGLGSGVPIQEGAQTKTEHSWLCEEEGYSIKAASIVR
Sbjct:    1 MVVKLTGVLLLNIASTRRRSQPGLGSGVPIQEGAQTKTEHSWLCEEEGYSIKAASIVR 58          
BLAST of Bnascaffold789T0000100WE vs. GenBank_protein
Match: KAG5373869.1 (hypothetical protein IGI04_042810 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 115 bits (287), Expect = 1.430e-30
Identity = 57/64 (89.06%), Postives = 59/64 (92.19%), Query Frame = 0
Query:    6 KKGEAQMVVKLTGVLLLNIASTRRRSQPGLGSGVPIQEGAQTKTEHSWLCEEEGYSIKAASIVR 69
            KK    MVVKLTG LLLNIASTRRR+QPGLGSGVPIQEGAQTKTEHSWLCEEEGYSIKAAS+VR
Sbjct:   30 KKKLKGMVVKLTGALLLNIASTRRRNQPGLGSGVPIQEGAQTKTEHSWLCEEEGYSIKAASMVR 93          
BLAST of Bnascaffold789T0000100WE vs. GenBank_protein
Match: KAG5385204.1 (hypothetical protein IGI04_036674 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 112 bits (280), Expect = 1.540e-28
Identity = 58/69 (84.06%), Postives = 59/69 (85.51%), Query Frame = 0
Query:    1 MERCYKKGEAQMVVKLTGVLLLNIASTRRRSQPGLGSGVPIQEGAQTKTEHSWLCEEEGYSIKAASIVR 69
            ME+CYKKGEAQMVVKLTGVLLLNIAS          SGVPIQEGAQTKTEHSWLCEEEGYSIKAASIVR
Sbjct:    8 MEKCYKKGEAQMVVKLTGVLLLNIAS----------SGVPIQEGAQTKTEHSWLCEEEGYSIKAASIVR 66          
BLAST of Bnascaffold789T0000100WE vs. GenBank_protein
Match: KAG2255659.1 (hypothetical protein Bca52824_074953 [Brassica carinata])

HSP 1 Score: 104 bits (260), Expect = 1.190e-27
Identity = 55/69 (79.71%), Postives = 56/69 (81.16%), Query Frame = 0
Query:    1 MERCYKKGEAQMVVKLTGVLLLNIASTRRRSQPGLGSGVPIQEGAQTKTEHSWLCEEEGYSIKAASIVR 69
            MERCYKKGEAQMVVKLT VLLLNIAST       +     IQEGAQTKTEHSWLCEEEGYSIKAASIVR
Sbjct:    7 MERCYKKGEAQMVVKLTSVLLLNIASTEEERTCPVSMRF-IQEGAQTKTEHSWLCEEEGYSIKAASIVR 74          
BLAST of Bnascaffold789T0000100WE vs. GenBank_protein
Match: KAF3592119.1 (hypothetical protein DY000_02022244 [Brassica cretica])

HSP 1 Score: 91.7 bits (226), Expect = 1.910e-21
Identity = 49/69 (71.01%), Postives = 51/69 (73.91%), Query Frame = 0
Query:    1 MERCYKKGEAQMVVKLTGVLLLNIASTRRRSQPGLGSGVPIQEGAQTKTEHSWLCEEEGYSIKAASIVR 69
            ME CYKK    +   +  VLLL IAS  RRSQPGL SGV IQE AQTKTEHSWLCEEEGYSIK AS VR
Sbjct:   96 MESCYKKATLGV---MRPVLLLTIASNWRRSQPGLVSGVSIQESAQTKTEHSWLCEEEGYSIKEASSVR 161          
BLAST of Bnascaffold789T0000100WE vs. GenBank_protein
Match: KAF2552968.1 (hypothetical protein F2Q68_00034435 [Brassica cretica])

HSP 1 Score: 91.7 bits (226), Expect = 1.020e-20
Identity = 49/69 (71.01%), Postives = 51/69 (73.91%), Query Frame = 0
Query:    1 MERCYKKGEAQMVVKLTGVLLLNIASTRRRSQPGLGSGVPIQEGAQTKTEHSWLCEEEGYSIKAASIVR 69
            ME CYKK    +   +  VLLL IAS  RRSQPGL SGV IQE AQTKTEHSWLCEEEGYSIK AS VR
Sbjct:   96 MESCYKKATLGV---MRPVLLLTIASNWRRSQPGLVSGVSIQESAQTKTEHSWLCEEEGYSIKEASSVR 161          
BLAST of Bnascaffold789T0000100WE vs. GenBank_protein
Match: KAG5373732.1 (hypothetical protein IGI04_042950 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 90.1 bits (222), Expect = 1.100e-20
Identity = 46/69 (66.67%), Postives = 50/69 (72.46%), Query Frame = 0
Query:    1 MERCYKKGEAQMVVKLTGVLLLNIASTRRRSQPGLGSGVPIQEGAQTKTEHSWLCEEEGYSIKAASIVR 69
            MERCYKKGEA MV +             ++   GLGSGVPIQEGAQTKTE+ WLCEEEGYSIKAASIVR
Sbjct:   44 MERCYKKGEAHMVYQ-------------KKKPTGLGSGVPIQEGAQTKTENFWLCEEEGYSIKAASIVR 99          
BLAST of Bnascaffold789T0000100WE vs. GenBank_protein
Match: KAG5374410.1 (hypothetical protein IGI04_042260 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 77.8 bits (190), Expect = 3.040e-15
Identity = 37/40 (92.50%), Postives = 37/40 (92.50%), Query Frame = 0
Query:   30 RSQPGLGSGVPIQEGAQTKTEHSWLCEEEGYSIKAASIVR 69
            RSQPGLGSGV IQE AQTKTEHSWLCEEEGYSIKAAS VR
Sbjct:  122 RSQPGLGSGVLIQESAQTKTEHSWLCEEEGYSIKAASSVR 161          
The following BLAST results are available for this feature:
BLAST of Bnascaffold789T0000100WE vs. GenBank_protein
Analysis Date: 2022-04-13 (Diamond on OGS1.0 vs NR)
Total hits: 13
Match NameE-valueIdentityDescription
VDC97062.11.350e-4198.55unnamed protein product [Brassica oleracea][more]
KAG5373883.11.760e-3897.06hypothetical protein IGI04_042800, partial [Brassi... [more]
KAG5374178.14.580e-32100.00hypothetical protein IGI04_042510 [Brassica rapa s... [more]
KAG5373869.11.430e-3089.06hypothetical protein IGI04_042810 [Brassica rapa s... [more]
KAG5385204.11.540e-2884.06hypothetical protein IGI04_036674 [Brassica rapa s... [more]
KAG2255659.11.190e-2779.71hypothetical protein Bca52824_074953 [Brassica car... [more]
KAF3592119.11.910e-2171.01hypothetical protein DY000_02022244 [Brassica cret... [more]
KAF2552968.11.020e-2071.01hypothetical protein F2Q68_00034435 [Brassica cret... [more]
KAG5373732.11.100e-2066.67hypothetical protein IGI04_042950 [Brassica rapa s... [more]
KAG5374410.13.040e-1592.50hypothetical protein IGI04_042260 [Brassica rapa s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold789contigscaffold789:2675..2884 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-04-13 .72417
Diamond on OGS1.0 vs NR2022-04-13 .782894
Brassica napus Westar OGS1.02022-04-13 .642364
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Bnascaffold789T0000100WEBnascaffold789T0000100WEBrassica napus WestarmRNAscaffold789 2675..2884 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Bnascaffold789T0000100WE-P ID=Bnascaffold789T0000100WE-P|Name=Bnascaffold789T0000100WE|organism=Brassica napus Westar|type=polypeptide|length=70bp
MERCYKKGEAQMVVKLTGVLLLNIASTRRRSQPGLGSGVPIQEGAQTKTE
HSWLCEEEGYSIKAASIVR.
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