Bnascaffold782T0000300WE-P (polypeptide) Brassica napus Westar

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBnascaffold782T0000300WE
Unique NameBnascaffold782T0000300WE-P
Typepolypeptide
OrganismBrassica napus Westar (cv. Westar, rapeseed)
Sequence length58
Homology
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BLAST of Bnascaffold782T0000300WE vs. GenBank_protein
Match: VDD24435.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 112 bits (280), Expect = 4.060e-31
Identity = 54/56 (96.43%), Postives = 54/56 (96.43%), Query Frame = 0 
Query:    1 MEIEHCMHELVPFLDILCAMSRLLVSRVNHFKRSWISNLLTHLNKSLPLLNQMIWT 56
            MEIEHCMHELVPFLDILCAMSRLLV RVNHFKRSWI NLLTHLNKSLPLLNQMIWT
Sbjct:    1 MEIEHCMHELVPFLDILCAMSRLLVLRVNHFKRSWILNLLTHLNKSLPLLNQMIWT 56
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BLAST of Bnascaffold782T0000300WE vs. GenBank_protein
Match: KAF3513898.1 (hypothetical protein F2Q69_00004186 [Brassica cretica])

HSP 1 Score: 67.8 bits (164), Expect = 2.230e-11
Identity = 33/36 (91.67%), Postives = 33/36 (91.67%), Query Frame = 0 
Query:    1 MEIEHCMHELVPFLDILCAMSRLLVSRVNHFKRSWI 36
            MEIEHCMHELVPFLDILCAMSRLLV RVNH KRS I
Sbjct:  399 MEIEHCMHELVPFLDILCAMSRLLVLRVNHLKRSCI 434
The following BLAST results are available for this feature:
BLAST of Bnascaffold782T0000300WE vs. GenBank_protein
Analysis Date: 2022-04-13 (Diamond on OGS1.0 vs NR)
Total hits: 2
Match NameE-valueIdentityDescription
VDD24435.14.060e-3196.43unnamed protein product [Brassica oleracea][more]
KAF3513898.12.230e-1191.67hypothetical protein F2Q69_00004186 [Brassica cret... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold782contigscaffold782:8264..8437 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-04-13 .72417
Diamond on OGS1.0 vs NR2022-04-13 .782894
Brassica napus Westar OGS1.02022-04-13 .642364
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Bnascaffold782T0000300WEBnascaffold782T0000300WEBrassica napus WestarmRNAscaffold782 8264..8437 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Bnascaffold782T0000300WE-P ID=Bnascaffold782T0000300WE-P|Name=Bnascaffold782T0000300WE|organism=Brassica napus Westar|type=polypeptide|length=58bp
MEIEHCMHELVPFLDILCAMSRLLVSRVNHFKRSWISNLLTHLNKSLPLL
NQMIWTN.
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