Bnascaffold772T0000100WE-P (polypeptide) Brassica napus Westar

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBnascaffold772T0000100WE
Unique NameBnascaffold772T0000100WE-P
Typepolypeptide
OrganismBrassica napus Westar (cv. Westar, rapeseed)
Sequence length112
Homology
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BLAST of Bnascaffold772T0000100WE vs. GenBank_protein
Match: KAF3590108.1 (hypothetical protein F2Q69_00032158 [Brassica cretica] >CAF1935887.1 unnamed protein product [Brassica napus] >CDY27974.1 BnaC05g43760D [Brassica napus] >VDD47012.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 228 bits (581), Expect = 2.230e-75
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 
Query:    1 MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCDR 111
            MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCDR
Sbjct:    1 MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCDR 111
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BLAST of Bnascaffold772T0000100WE vs. GenBank_protein
Match: CAF2102584.1 (unnamed protein product [Brassica napus] >CDY36007.1 BnaA05g29430D [Brassica napus] >VDC73198.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 227 bits (578), Expect = 6.390e-75
Identity = 110/111 (99.10%), Postives = 111/111 (100.00%), Query Frame = 0 
Query:    1 MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCDR 111
            MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNN+NNAQSLPAKCGVNLPYSISPSTNCDR
Sbjct:    1 MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNVNNAQSLPAKCGVNLPYSISPSTNCDR 111
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BLAST of Bnascaffold772T0000100WE vs. GenBank_protein
Match: XP_013584520.1 (PREDICTED: non-specific lipid-transfer protein 6 [Brassica oleracea var. oleracea] >XP_013675170.1 non-specific lipid-transfer protein 6-like [Brassica napus] >XP_022559257.1 non-specific lipid-transfer protein 6-like [Brassica napus] >KAF8059959.1 hypothetical protein N665_1223s0017 [Sinapis alba] >KAG2272530.1 hypothetical protein Bca52824_067085 [Brassica carinata])

HSP 1 Score: 226 bits (576), Expect = 1.380e-74
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 
Query:    1 MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCD 110
            MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCD
Sbjct:    1 MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCD 110
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BLAST of Bnascaffold772T0000100WE vs. GenBank_protein
Match: XP_009146980.1 (non-specific lipid-transfer protein 6 [Brassica rapa] >XP_013750462.1 non-specific lipid-transfer protein 6-like [Brassica napus] >RID64182.1 hypothetical protein BRARA_E03138 [Brassica rapa])

HSP 1 Score: 225 bits (573), Expect = 3.950e-74
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 0 
Query:    1 MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCD 110
            MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNN+NNAQSLPAKCGVNLPYSISPSTNCD
Sbjct:    1 MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNVNNAQSLPAKCGVNLPYSISPSTNCD 110
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BLAST of Bnascaffold772T0000100WE vs. GenBank_protein
Match: KAG5398996.1 (hypothetical protein IGI04_020810 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 224 bits (571), Expect = 7.980e-74
Identity = 108/110 (98.18%), Postives = 110/110 (100.00%), Query Frame = 0 
Query:    1 MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCD 110
            MRSLLLALFLV+AFHRGEAAVSCN+VVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCD
Sbjct:    1 MRSLLLALFLVIAFHRGEAAVSCNSVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCD 110
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BLAST of Bnascaffold772T0000100WE vs. GenBank_protein
Match: XP_018432762.1 (PREDICTED: non-specific lipid-transfer protein 6 [Raphanus sativus])

HSP 1 Score: 222 bits (565), Expect = 6.570e-73
Identity = 107/110 (97.27%), Postives = 108/110 (98.18%), Query Frame = 0 
Query:    1 MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCD 110
            MRS+LLALFLVLAFH GEAAVSCNAVVGDLYPCLSYVVQGGNVP NCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCD
Sbjct:    1 MRSILLALFLVLAFHHGEAAVSCNAVVGDLYPCLSYVVQGGNVPTNCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCD 110
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BLAST of Bnascaffold772T0000100WE vs. GenBank_protein
Match: ESQ49197.1 (hypothetical protein EUTSA_v10021759mg [Eutrema salsugineum])

HSP 1 Score: 199 bits (507), Expect = 7.760e-64
Identity = 96/111 (86.49%), Postives = 102/111 (91.89%), Query Frame = 0 
Query:    1 MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCDR 111
            MRSLLLA+ LVLA H GEAAVSCN+VV +LYPC+SYVVQGGNVPA+CCNGIRTLN QAQTP DRQ VCRCIKNAIGGVS+SSNNLNNA SLPAKCGVNLPY ISPSTNCDR
Sbjct:    1 MRSLLLAVCLVLALHCGEAAVSCNSVVSELYPCISYVVQGGNVPASCCNGIRTLNGQAQTPADRQSVCRCIKNAIGGVSYSSNNLNNALSLPAKCGVNLPYRISPSTNCDR 111
[Close]
BLAST of Bnascaffold772T0000100WE vs. GenBank_protein
Match: XP_006407743.1 (non-specific lipid-transfer protein 6 [Eutrema salsugineum] >ESQ49196.1 hypothetical protein EUTSA_v10021759mg [Eutrema salsugineum])

HSP 1 Score: 197 bits (502), Expect = 2.680e-63
Identity = 95/110 (86.36%), Postives = 101/110 (91.82%), Query Frame = 0 
Query:    1 MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCD 110
            MRSLLLA+ LVLA H GEAAVSCN+VV +LYPC+SYVVQGGNVPA+CCNGIRTLN QAQTP DRQ VCRCIKNAIGGVS+SSNNLNNA SLPAKCGVNLPY ISPSTNCD
Sbjct:    1 MRSLLLAVCLVLALHCGEAAVSCNSVVSELYPCISYVVQGGNVPASCCNGIRTLNGQAQTPADRQSVCRCIKNAIGGVSYSSNNLNNALSLPAKCGVNLPYRISPSTNCD 110
[Close]
BLAST of Bnascaffold772T0000100WE vs. GenBank_protein
Match: KAF3552389.1 (hypothetical protein DY000_02003865 [Brassica cretica] >KAG2294995.1 hypothetical protein Bca52824_041664 [Brassica carinata])

HSP 1 Score: 191 bits (486), Expect = 7.370e-61
Identity = 95/113 (84.07%), Postives = 103/113 (91.15%), Query Frame = 0 
Query:    1 MRSL-LLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPA-NCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCDR 111
            MRSL LLALFLVLAFH GEAAV+CN VVGDLYPCLSYV+QGGN P+ NCCNG+RTLNSQAQT  DRQ VCRCIKNAIGG S+SS+NLNNA SLPAKCGVNLP+SISPSTNC+R
Sbjct:    1 MRSLFLLALFLVLAFHHGEAAVTCNNVVGDLYPCLSYVMQGGNAPSTNCCNGVRTLNSQAQTTADRQSVCRCIKNAIGGASYSSSNLNNALSLPAKCGVNLPFSISPSTNCNR 113
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BLAST of Bnascaffold772T0000100WE vs. GenBank_protein
Match: KAF3509863.1 (hypothetical protein F2Q69_00003204 [Brassica cretica])

HSP 1 Score: 191 bits (486), Expect = 1.020e-60
Identity = 95/113 (84.07%), Postives = 103/113 (91.15%), Query Frame = 0 
Query:    1 MRSL-LLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPA-NCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCDR 111
            MRSL LLALFLVLAFH GEAAV+CN VVGDLYPCLSYV+QGGN P+ NCCNG+RTLNSQAQT  DRQ VCRCIKNAIGG S+SS+NLNNA SLPAKCGVNLP+SISPSTNC+R
Sbjct:    1 MRSLFLLALFLVLAFHHGEAAVTCNNVVGDLYPCLSYVMQGGNAPSTNCCNGVRTLNSQAQTTADRQSVCRCIKNAIGGASYSSSNLNNALSLPAKCGVNLPFSISPSTNCNR 113
The following BLAST results are available for this feature:
BLAST of Bnascaffold772T0000100WE vs. GenBank_protein
Analysis Date: 2022-04-13 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
KAF3590108.12.230e-75100.00hypothetical protein F2Q69_00032158 [Brassica cret... [more]
CAF2102584.16.390e-7599.10unnamed protein product [Brassica napus] >CDY36007... [more]
XP_013584520.11.380e-74100.00PREDICTED: non-specific lipid-transfer protein 6 [... [more]
XP_009146980.13.950e-7499.09non-specific lipid-transfer protein 6 [Brassica ra... [more]
KAG5398996.17.980e-7498.18hypothetical protein IGI04_020810 [Brassica rapa s... [more]
XP_018432762.16.570e-7397.27PREDICTED: non-specific lipid-transfer protein 6 [... [more]
ESQ49197.17.760e-6486.49hypothetical protein EUTSA_v10021759mg [Eutrema sa... [more]
XP_006407743.12.680e-6386.36non-specific lipid-transfer protein 6 [Eutrema sal... [more]
KAF3552389.17.370e-6184.07hypothetical protein DY000_02003865 [Brassica cret... [more]
KAF3509863.11.020e-6084.07hypothetical protein F2Q69_00003204 [Brassica cret... [more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006869 lipid transport
molecular_function GO:0008289 lipid binding
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-04-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000528Plant non-specific lipid-transfer protein/Par allergenPRINTSPR00382LIPIDTRNSFERcoord: 22..38
score: 39.82
coord: 42..56
score: 41.54
coord: 63..78
score: 43.46
coord: 82..99
score: 41.54
coord: 100..111
score: 53.97
IPR000528Plant non-specific lipid-transfer protein/Par allergenPANTHERPTHR33076FAMILY NOT NAMEDcoord: 6..110
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainSMARTSM00499aai_6coord: 23..109
e-value: 2.8E-14
score: 63.5
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainPFAMPF00234Tryp_alpha_amylcoord: 23..109
e-value: 6.5E-8
score: 32.9
IPR036312Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamilyGENE3D1.10.110.10coord: 20..111
e-value: 2.9E-28
score: 100.1
IPR036312Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamilySUPERFAMILY47699Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumincoord: 22..110
NoneNo IPR availablePANTHERPTHR33076:SF50NON-SPECIFIC LIPID-TRANSFER PROTEIN 10-RELATEDcoord: 6..110
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..111
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availableCDDcd01960nsLTP1coord: 21..110
e-value: 1.30241E-32
score: 107.436
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.938
NoneNo IPR availableSIGNALP_GRAM_NEGATIVESignalP-noTMSignalP-noTMcoord: 1..19
score: 0.758
NoneNo IPR availableSIGNALP_GRAM_POSITIVESignalP-TMSignalP-TMcoord: 1..19
score: 0.522

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold772contigscaffold772:5400..5735 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-04-13 .72417
Blast2go on OGS1.02022-04-13 .735315
Diamond on OGS1.0 vs NR2022-04-13 .782894
Brassica napus Westar OGS1.02022-04-13 .642364
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Bnascaffold772T0000100WEBnascaffold772T0000100WEBrassica napus WestarmRNAscaffold772 5400..5735 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Bnascaffold772T0000100WE-P ID=Bnascaffold772T0000100WE-P|Name=Bnascaffold772T0000100WE|organism=Brassica napus Westar|type=polypeptide|length=112bp
MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNG
IRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLP
YSISPSTNCDR.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036312Bifun_inhib/LTP/seed_sf
IPR016140Bifunc_inhib/LTP/seed_store
IPR000528Plant_nsLTP
Vocabulary: Biological Process
TermDefinition
GO:0006869lipid transport
Vocabulary: Molecular Function
TermDefinition
GO:0008289lipid binding