Bnascaffold757T0000100WE-P (polypeptide) Brassica napus Westar

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBnascaffold757T0000100WE
Unique NameBnascaffold757T0000100WE-P
Typepolypeptide
OrganismBrassica napus Westar (cv. Westar, rapeseed)
Sequence length142
Homology
BLAST of Bnascaffold757T0000100WE vs. GenBank_protein
Match: KAG2248297.1 (hypothetical protein Bca52824_087925 [Brassica carinata])

HSP 1 Score: 179 bits (454), Expect = 1.370e-54
Identity = 106/178 (59.55%), Postives = 114/178 (64.04%), Query Frame = 0
Query:    1 MGDQDKEKSMENPDVVHK-----------------------------------PSGLGLRLTRPIGSRPKAGSGKGVRWAIEPDSIGRVAPRFYPDRRIGLWGRSGSVRVFC--YLFWTIYLILSQGVELRMVLVKPRSREGSVSERLCNVWLDDARDELVIVYETVKKLCIESHVSK 141
            MGDQDKEK++E+P+VV K                                   P+GLGLRLTRP GSRPKAGSGK V  AIEPD + R+       R  GL          C  YLFWT+YLILSQGVELRMVLVKPRSREGSVSERLCNVWLDDARDELVIVYETVKKLCI SHVSK
Sbjct:    1 MGDQDKEKNVEDPEVVQKVVSDPYGPVYDLLSQDMVHGLPKPRKSRMVRSVAKPTGLGLRLTRPFGSRPKAGSGKEVSKAIEPDFVDRL--HLDSIRLDGLVFGDDPDLFVCSAYLFWTVYLILSQGVELRMVLVKPRSREGSVSERLCNVWLDDARDELVIVYETVKKLCIGSHVSK 176          
BLAST of Bnascaffold757T0000100WE vs. GenBank_protein
Match: KAG5384562.1 (hypothetical protein IGI04_036032 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 183 bits (465), Expect = 2.290e-53
Identity = 99/122 (81.15%), Postives = 99/122 (81.15%), Query Frame = 0
Query:   19 PSGLGLRLTRPIGSRPKAGSGKGVRWAIEPDSIGRVAPRFYPDRRIGLWGRSGSVRVFC--YLFWTIYLILSQGVELRMVLVKPRSREGSVSERLCNVWLDDARDELVIVYETVKKLCIESH 138
            PSGLGLRLTRPIGSRPKAGSGKGVRWAIEPDSIGR        R  GL          C  YLFWTIYLILSQGVELRMVLVKPRSREGSVSERLCNVWLDD RDELVIVYETVKKLCIESH
Sbjct:  206 PSGLGLRLTRPIGSRPKAGSGKGVRWAIEPDSIGRS--HLDSIRLDGLVFGDDPDLFVCSVYLFWTIYLILSQGVELRMVLVKPRSREGSVSERLCNVWLDDTRDELVIVYETVKKLCIESH 325          
BLAST of Bnascaffold757T0000100WE vs. GenBank_protein
Match: KAF2532799.1 (hypothetical protein F2Q70_00028970, partial [Brassica cretica])

HSP 1 Score: 176 bits (446), Expect = 6.690e-53
Identity = 115/214 (53.74%), Postives = 117/214 (54.67%), Query Frame = 0
Query:    1 MGDQDKEKSMENPDVVHK----------------------------PS--------------------------------------------GLGLRLTRPIGSRPKAGSGKGVRWAIEPDSIGRVAPRFYPDRRIGLWGRSGSVRVFC--YLFWTIYLILSQGVELRMVLVKPRSREGSVSERLCNVWLDDARDELVIVYETVKKLCIESHVS 140
            MGDQDKEKSMENPDVVHK                            P+                                            G GLRLTRPIGSRPKAGSGKGVRWAIEPDSIGR        R  GL          C  YLFWT YLILSQG ELR+VLVKPRSREGSVSERLCNVWLDDARDELVIVYETVKKLCIESHVS
Sbjct:    1 MGDQDKEKSMENPDVVHKVCDGPWPHQTERTVYATAPQLCSVPKSHPALLICFNSFLFSSLWLNTEGHELSRVMSVQEARMAKGYMFQTVSFGTGLRLTRPIGSRPKAGSGKGVRWAIEPDSIGRS--HLDSIRLDGLVFGDDLDLFVCSVYLFWTFYLILSQG-ELRVVLVKPRSREGSVSERLCNVWLDDARDELVIVYETVKKLCIESHVS 211          
BLAST of Bnascaffold757T0000100WE vs. GenBank_protein
Match: KAG2248296.1 (hypothetical protein Bca52824_087924 [Brassica carinata])

HSP 1 Score: 172 bits (435), Expect = 3.020e-51
Identity = 95/128 (74.22%), Postives = 99/128 (77.34%), Query Frame = 0
Query:   16 VHKPSGLGLRLTRPIGSRPKAGSGKGVRWAIEPDSIGRVAPRFYPDRRIGLWGRSGSVRVFC--YLFWTIYLILSQGVELRMVLVKPRSREGSVSERLCNVWLDDARDELVIVYETVKKLCIESHVSK 141
            V KP+GLGLRLTRP GSRPKAGSGK V  AIEPD + R+       R  GL          C  YLFWT+YLILSQGVELRMVLVKPRSREGSVSERLCNVWLDDARDELVIVYETVKKLCI SHVSK
Sbjct:   85 VAKPTGLGLRLTRPFGSRPKAGSGKEVSKAIEPDFVDRL--HLDSIRLDGLVFGDDPDLFVCSAYLFWTVYLILSQGVELRMVLVKPRSREGSVSERLCNVWLDDARDELVIVYETVKKLCIGSHVSK 210          
BLAST of Bnascaffold757T0000100WE vs. GenBank_protein
Match: KAG5388683.1 (hypothetical protein IGI04_030224 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 182 bits (461), Expect = 6.570e-51
Identity = 100/125 (80.00%), Postives = 101/125 (80.80%), Query Frame = 0
Query:   19 PSGLGLRLTRPIGSRPKAGSGKGVRWAIEPDSIGRVAPRFYPDRRIGLWGRSGSVRVFC--YLFWTIYLILSQGVELRMVLVKPRSREGSVSERLCNVWLDDARDELVIVYETVKKLCIESHVSK 141
            PSGLGLRLTR IGSRPKAGSGKGVRWAIEPDSIGR        R  GL          C  YLFWTIYLILSQGVELRMVLVKPRSREGSVSERLCNVW+DDARDELVIVYETVKKLCI SHVSK
Sbjct:  541 PSGLGLRLTRLIGSRPKAGSGKGVRWAIEPDSIGRS--HLDSIRLDGLVFGDDLDLFVCSVYLFWTIYLILSQGVELRMVLVKPRSREGSVSERLCNVWVDDARDELVIVYETVKKLCIGSHVSK 663          
BLAST of Bnascaffold757T0000100WE vs. GenBank_protein
Match: KAG2288695.1 (hypothetical protein Bca52824_048299 [Brassica carinata])

HSP 1 Score: 174 bits (442), Expect = 7.790e-51
Identity = 96/128 (75.00%), Postives = 103/128 (80.47%), Query Frame = 0
Query:   16 VHKPSGLGLRLTRPIGSRPKAGSGKGVRWAIEPDSIGRVAPRFYPDRRIGL-WGRSGSVRVF-CYLFWTIYLILSQGVELRMVLVKPRSREGSVSERLCNVWLDDARDELVIVYETVKKLCIESHVSK 141
            V +P+GLGLRLTRP GSRPKAGSGK VRWAIEPD + R        R  GL +G +  + V   YLFWT+YLILSQGVELRMVLVKPRSREGSVSERLCNVWL DARDELVIVYETVKKLCI SHVSK
Sbjct:    5 VARPTGLGLRLTRPFGSRPKAGSGKKVRWAIEPDFMDRS--HLDSIRLDGLVFGNNPDLFVCSAYLFWTVYLILSQGVELRMVLVKPRSREGSVSERLCNVWLADARDELVIVYETVKKLCIGSHVSK 130          
BLAST of Bnascaffold757T0000100WE vs. GenBank_protein
Match: KAG5384585.1 (hypothetical protein IGI04_036055 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 181 bits (459), Expect = 1.350e-50
Identity = 98/123 (79.67%), Postives = 98/123 (79.67%), Query Frame = 0
Query:   21 GLGLRLTRPIGSRPKAGSGKGVRWAIEPDSIGRVAPRFYPDRRIGLWGRSGSVRVFC--YLFWTIYLILSQGVELRMVLVKPRSREGSVSERLCNVWLDDARDELVIVYETVKKLCIESHVSK 141
            G GLRLTRPIGSRPKAGSGKGVRWAIEPDSIGR        R  GL          C  YLFWTIYLILSQGVELRMVLVKPRSREGSVSERLCNVWLDDARDELVIVYETVKKLCIESH  K
Sbjct:   58 GTGLRLTRPIGSRPKAGSGKGVRWAIEPDSIGRS--HLDSIRLDGLVFGDDPDLFVCSVYLFWTIYLILSQGVELRMVLVKPRSREGSVSERLCNVWLDDARDELVIVYETVKKLCIESHAGK 178          
BLAST of Bnascaffold757T0000100WE vs. GenBank_protein
Match: KAG5414503.1 (hypothetical protein IGI04_002070 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 178 bits (451), Expect = 1.410e-49
Identity = 98/124 (79.03%), Postives = 99/124 (79.84%), Query Frame = 0
Query:   19 PSGLGLRLTRPIGSRPKAGSGKGVRWAIEPDSIGRVAPRFYPDRRIGLWGRSGSVRVFC--YLFWTIYLILSQGVELRMVLVKPRSREGSVSERLCNVWLDDARDELVIVYETVKKLCIESHVS 140
            PSGLGL+LTR IGSRPKAGSGKGVRWAIEPD IGR        R  GL          C  YLFWTIYLILSQGVELRMVLVKPRSREGSVSERLCNVWLDDARDELVIVYETVKKLCI SHVS
Sbjct:  337 PSGLGLKLTRLIGSRPKAGSGKGVRWAIEPDFIGRS--HLDSIRLDGLVFGDDPDLFVCSVYLFWTIYLILSQGVELRMVLVKPRSREGSVSERLCNVWLDDARDELVIVYETVKKLCIGSHVS 458          
BLAST of Bnascaffold757T0000100WE vs. GenBank_protein
Match: KAG5400308.1 (hypothetical protein IGI04_014915 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 164 bits (416), Expect = 5.060e-48
Identity = 90/112 (80.36%), Postives = 93/112 (83.04%), Query Frame = 0
Query:   32 SRPKAGSGKGVRWAIEPDSIGRV-APRFYPDRRIGLWGRSGSVRVFC-YLFWTIYLILSQGVELRMVLVKPRSREGSVSERLCNVWLDDARDELVIVYETVKKLCIESHVSK 141
            SRPKAGSGKGVRWAIEPDSIGR        DR +  +G    + V   YLFWTIYLILSQGVELRMVLVKPRSREGSVSERLCNVWLDDARDELVIVYETVKKLCIESHVSK
Sbjct:  128 SRPKAGSGKGVRWAIEPDSIGRSHLDSIRLDRLV--FGDDPDLFVCSVYLFWTIYLILSQGVELRMVLVKPRSREGSVSERLCNVWLDDARDELVIVYETVKKLCIESHVSK 237          
BLAST of Bnascaffold757T0000100WE vs. GenBank_protein
Match: KAG5384191.1 (hypothetical protein IGI04_035661 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 160 bits (405), Expect = 2.120e-47
Identity = 90/140 (64.29%), Postives = 99/140 (70.71%), Query Frame = 0
Query:   12 NPDVVHKPSG-----LG-LRLTRPIG----SRPKAGSGKGVRWAIEPDSIGRVAPRFYPDRRIGLWGRSGSVRVFCYLFWTIYLILSQGVELRMVLVKPRSREGSVSERLCNVWLDDARDELVIVYETVKKLCIESHVSK 141
            N   VH P+G     LG + + +P+     +RPKAGSGKGVRWAIEPDSIGR          +  W          YLFWTIYLILSQGVELR+VLVKPRSREGSVSERLCNVWLDD RDELVIVYETVKKLC +SHVSK
Sbjct:   18 NGQRVHVPNGVFRDRLGPILMDQPMACLVKTRPKAGSGKGVRWAIEPDSIGRSHLDSIRLDGLVFWDDPDLFLCSVYLFWTIYLILSQGVELRIVLVKPRSREGSVSERLCNVWLDDTRDELVIVYETVKKLCTKSHVSK 157          
The following BLAST results are available for this feature:
BLAST of Bnascaffold757T0000100WE vs. GenBank_protein
Analysis Date: 2022-04-13 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
KAG2248297.11.370e-5459.55hypothetical protein Bca52824_087925 [Brassica car... [more]
KAG5384562.12.290e-5381.15hypothetical protein IGI04_036032 [Brassica rapa s... [more]
KAF2532799.16.690e-5353.74hypothetical protein F2Q70_00028970, partial [Bras... [more]
KAG2248296.13.020e-5174.22hypothetical protein Bca52824_087924 [Brassica car... [more]
KAG5388683.16.570e-5180.00hypothetical protein IGI04_030224 [Brassica rapa s... [more]
KAG2288695.17.790e-5175.00hypothetical protein Bca52824_048299 [Brassica car... [more]
KAG5384585.11.350e-5079.67hypothetical protein IGI04_036055 [Brassica rapa s... [more]
KAG5414503.11.410e-4979.03hypothetical protein IGI04_002070 [Brassica rapa s... [more]
KAG5400308.15.060e-4880.36hypothetical protein IGI04_014915 [Brassica rapa s... [more]
KAG5384191.12.120e-4764.29hypothetical protein IGI04_035661 [Brassica rapa s... [more]

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InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-04-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..65
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 88..141
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 66..87
NoneNo IPR availableTMHMMTMhelixcoord: 71..93

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold757contigscaffold757:14508..15641 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-04-13 .72417
Diamond on OGS1.0 vs NR2022-04-13 .782894
Brassica napus Westar OGS1.02022-04-13 .642364
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Bnascaffold757T0000100WEBnascaffold757T0000100WEBrassica napus WestarmRNAscaffold757 14508..15641 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Bnascaffold757T0000100WE-P ID=Bnascaffold757T0000100WE-P|Name=Bnascaffold757T0000100WE|organism=Brassica napus Westar|type=polypeptide|length=142bp
MGDQDKEKSMENPDVVHKPSGLGLRLTRPIGSRPKAGSGKGVRWAIEPDS
IGRVAPRFYPDRRIGLWGRSGSVRVFCYLFWTIYLILSQGVELRMVLVKP
RSREGSVSERLCNVWLDDARDELVIVYETVKKLCIESHVSK.
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