Bnascaffold706T0000300WE-P (polypeptide) Brassica napus Westar

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Bnascaffold706T0000300WE
Unique Name	Bnascaffold706T0000300WE-P
Type	polypeptide
Organism	Brassica napus Westar (cv. Westar, rapeseed)
Sequence length	126

Homology

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BLAST of Bnascaffold706T0000300WE vs. GenBank_protein
Match: VDD23498.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 243 bits (621), Expect = 4.980e-81
Identity = 123/125 (98.40%), Postives = 125/125 (100.00%), Query Frame = 0

Query:    1 MSTSSSSDGASYVDMLYSVNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGLQQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDQDAQKTTVRLHTLVIRSTRWRKS 125
            MSTSSSSDGASYVDMLYSVNDSNFG+PDRCPCGSAIIIQI+TEAAAIPKKYFVCKDFKNDGLQQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDQDAQKTTVRLHTLVIRSTRWRKS
Sbjct:    1 MSTSSSSDGASYVDMLYSVNDSNFGVPDRCPCGSAIIIQITTEAAAIPKKYFVCKDFKNDGLQQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDQDAQKTTVRLHTLVIRSTRWRKS 125

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BLAST of Bnascaffold706T0000300WE vs. GenBank_protein
Match: CAF2321337.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 244 bits (622), Expect = 2.380e-78
Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 0

Query:    1 MSTSSSSDGASYVDMLYSVNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGLQQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDQDAQKTTVRLHTLVIRSTRWRKS 125
            MSTSSSSDGASYVDMLYSVNDSNFGIPDRCPCGSAIIIQI+TEAAAIPKKYFVCKDFKNDGLQQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDQDAQKTTVRLHTLVIRSTRWRKS
Sbjct:  201 MSTSSSSDGASYVDMLYSVNDSNFGIPDRCPCGSAIIIQITTEAAAIPKKYFVCKDFKNDGLQQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDQDAQKTTVRLHTLVIRSTRWRKS 325

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BLAST of Bnascaffold706T0000300WE vs. GenBank_protein
Match: CAF1929963.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 230 bits (586), Expect = 6.750e-73
Identity = 119/127 (93.70%), Postives = 123/127 (96.85%), Query Frame = 0

Query:    1 MSTSSSSDGASYVDMLYSVNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGL--QQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDQDAQKTTVRLHTLVIRSTRWRKS 125
            MSTSSSSDGASYVDM+Y+VNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGL  +QEWTAAIEDETRRLKKTVDDHES IRSLGRVEYRIDRID+DAQKTTVRL TLVIRSTRWRKS
Sbjct:  199 MSTSSSSDGASYVDMIYAVNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGLHRKQEWTAAIEDETRRLKKTVDDHESMIRSLGRVEYRIDRIDEDAQKTTVRLQTLVIRSTRWRKS 325

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BLAST of Bnascaffold706T0000300WE vs. GenBank_protein
Match: CAF1931540.1 (unnamed protein product, partial [Brassica napus])

HSP 1 Score: 217 bits (553), Expect = 1.100e-70
Identity = 112/123 (91.06%), Postives = 118/123 (95.93%), Query Frame = 0

Query:    1 MSTSSSSDGASYVDMLYSVNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGL--QQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDQDAQKTTVRLHTLVIRSTR 121
            MSTSSSSDGASYVDMLY++NDSNFGIPDRCPCGSAIIIQISTEA AIPKKYFVCKDFK DGL  +QEWT+A+EDETRRLKKTVDDHESRIRSLGRVEYRIDRID+DAQKTTVRL TLVIRSTR
Sbjct:    1 MSTSSSSDGASYVDMLYAMNDSNFGIPDRCPCGSAIIIQISTEAVAIPKKYFVCKDFKTDGLHRKQEWTSAVEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDEDAQKTTVRLQTLVIRSTR 123

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BLAST of Bnascaffold706T0000300WE vs. GenBank_protein
Match: KAG5375820.1 (hypothetical protein IGI04_040416 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 223 bits (569), Expect = 1.110e-66
Identity = 113/115 (98.26%), Postives = 114/115 (99.13%), Query Frame = 0

Query:    1 MSTSSSSDGASYVDMLYSVNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGLQQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDQDAQKTTVRLHTL 115
            MSTSSSSDGASYVDMLYSVNDSNFGIPDRCPCGSAIIIQI+TEAAAIPKKYFVCKDFKNDGLQQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRID DAQKTTVRLHTL
Sbjct:  232 MSTSSSSDGASYVDMLYSVNDSNFGIPDRCPCGSAIIIQITTEAAAIPKKYFVCKDFKNDGLQQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDHDAQKTTVRLHTL 346

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BLAST of Bnascaffold706T0000300WE vs. GenBank_protein
Match: KAF3585944.1 (hypothetical protein F2Q69_00029171 [Brassica cretica])

HSP 1 Score: 223 bits (568), Expect = 1.280e-66
Identity = 114/120 (95.00%), Postives = 117/120 (97.50%), Query Frame = 0

Query:    8 DGASYVDMLYSVNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGL--QQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDQDAQKTTVRLHTLVIRSTRWRKS 125
            DGASYVDMLY+VNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGL  +QEWTAAIEDETRRLKKTV+DHESRIRSLGRVEYRIDRIDQDAQKTTVRL TLVIRSTRWRKS
Sbjct:  557 DGASYVDMLYAVNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGLHRKQEWTAAIEDETRRLKKTVEDHESRIRSLGRVEYRIDRIDQDAQKTTVRLQTLVIRSTRWRKS 676

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BLAST of Bnascaffold706T0000300WE vs. GenBank_protein
Match: CAF1706473.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 201 bits (512), Expect = 4.000e-64
Identity = 103/109 (94.50%), Postives = 107/109 (98.17%), Query Frame = 0

Query:    1 MSTSSSSDGASYVDMLYSVNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGL--QQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDQDAQK 107
            MSTSSSSDGASYVDMLY++NDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGL  +QEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRID+DAQK
Sbjct:    1 MSTSSSSDGASYVDMLYAMNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGLHRKQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDEDAQK 109

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BLAST of Bnascaffold706T0000300WE vs. GenBank_protein
Match: KAF3515012.1 (hypothetical protein F2Q69_00006144 [Brassica cretica])

HSP 1 Score: 201 bits (510), Expect = 8.060e-64
Identity = 103/109 (94.50%), Postives = 106/109 (97.25%), Query Frame = 0

Query:    1 MSTSSSSDGASYVDMLYSVNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGL--QQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDQDAQK 107
            MSTSSSSDGASYVDMLY+VNDSNFGIPD CPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGL  +QEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRID+DAQK
Sbjct:    1 MSTSSSSDGASYVDMLYAVNDSNFGIPDHCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGLHRKQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDEDAQK 109

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BLAST of Bnascaffold706T0000300WE vs. GenBank_protein
Match: CDY58075.1 (BnaAnng14990D [Brassica napus])

HSP 1 Score: 199 bits (507), Expect = 2.310e-63
Identity = 103/109 (94.50%), Postives = 106/109 (97.25%), Query Frame = 0

Query:    1 MSTSSSSDGASYVDMLYSVNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGL--QQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDQDAQK 107
            MSTSSSSDGASYVDMLY+VNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGL  +QEWTAAIEDETR LKKTVDDHESRIRSLGRVEYRIDRID+DAQK
Sbjct:    1 MSTSSSSDGASYVDMLYAVNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGLHRKQEWTAAIEDETRCLKKTVDDHESRIRSLGRVEYRIDRIDEDAQK 109

[Close]

BLAST of Bnascaffold706T0000300WE vs. GenBank_protein
Match: KAG2277587.1 (hypothetical protein Bca52824_060142 [Brassica carinata])

HSP 1 Score: 199 bits (505), Expect = 4.660e-63
Identity = 101/109 (92.66%), Postives = 106/109 (97.25%), Query Frame = 0

Query:    1 MSTSSSSDGASYVDMLYSVNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGL--QQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDQDAQK 107
            MSTSSSSDGASYVDMLY++NDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGL  +QEWTAAIEDETRRLKKTVDDHESRIRS GRVEYRIDRID+D+QK
Sbjct:    1 MSTSSSSDGASYVDMLYAMNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGLHIKQEWTAAIEDETRRLKKTVDDHESRIRSFGRVEYRIDRIDEDSQK 109

The following BLAST results are available for this feature:

BLAST of Bnascaffold706T0000300WE vs. GenBank_protein

BLAST of Bnascaffold706T0000300WE vs. GenBank_protein
Analysis Date: 2022-04-13 (Diamond on OGS1.0 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
VDD23498.1	4.980e-81	98.40	unnamed protein product [Brassica rapa]	[more]
CAF2321337.1	2.380e-78	99.20	unnamed protein product [Brassica napus]	[more]
CAF1929963.1	6.750e-73	93.70	unnamed protein product [Brassica napus]	[more]
CAF1931540.1	1.100e-70	91.06	unnamed protein product, partial [Brassica napus]	[more]
KAG5375820.1	1.110e-66	98.26	hypothetical protein IGI04_040416 [Brassica rapa s...	[more]
KAF3585944.1	1.280e-66	95.00	hypothetical protein F2Q69_00029171 [Brassica cret...	[more]
CAF1706473.1	4.000e-64	94.50	unnamed protein product [Brassica napus]	[more]
KAF3515012.1	8.060e-64	94.50	hypothetical protein F2Q69_00006144 [Brassica cret...	[more]
CDY58075.1	2.310e-63	94.50	BnaAnng14990D [Brassica napus]	[more]
KAG2277587.1	4.660e-63	92.66	hypothetical protein Bca52824_060142 [Brassica car...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold706	contig	scaffold706:12449..12901 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
Interproscan on OGS1.0	2022-04-13 .72417
Diamond on OGS1.0 vs NR	2022-04-13 .782894
Brassica napus Westar OGS1.0	2022-04-13 .642364

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Bnascaffold706T0000300WE	Bnascaffold706T0000300WE	Brassica napus Westar	mRNA	scaffold706 12449..12901 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Bnascaffold706T0000300WE-P ID=Bnascaffold706T0000300WE-P|Name=Bnascaffold706T0000300WE|organism=Brassica napus Westar|type=polypeptide|length=126bp
MSTSSSSDGASYVDMLYSVNDSNFGIPDRCPCGSAIIIQISTEAAAIPKK
YFVCKDFKNDGLQQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDR
IDQDAQKTTVRLHTLVIRSTRWRKS.

Orthology

View orthology data for Bnascaffold706T0000300WE-P