Bnascaffold706T0000300WE-P (polypeptide) Brassica napus Westar

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBnascaffold706T0000300WE
Unique NameBnascaffold706T0000300WE-P
Typepolypeptide
OrganismBrassica napus Westar (cv. Westar, rapeseed)
Sequence length126
Homology
BLAST of Bnascaffold706T0000300WE vs. GenBank_protein
Match: VDD23498.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 243 bits (621), Expect = 4.980e-81
Identity = 123/125 (98.40%), Postives = 125/125 (100.00%), Query Frame = 0
Query:    1 MSTSSSSDGASYVDMLYSVNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGLQQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDQDAQKTTVRLHTLVIRSTRWRKS 125
            MSTSSSSDGASYVDMLYSVNDSNFG+PDRCPCGSAIIIQI+TEAAAIPKKYFVCKDFKNDGLQQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDQDAQKTTVRLHTLVIRSTRWRKS
Sbjct:    1 MSTSSSSDGASYVDMLYSVNDSNFGVPDRCPCGSAIIIQITTEAAAIPKKYFVCKDFKNDGLQQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDQDAQKTTVRLHTLVIRSTRWRKS 125          
BLAST of Bnascaffold706T0000300WE vs. GenBank_protein
Match: CAF2321337.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 244 bits (622), Expect = 2.380e-78
Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 0
Query:    1 MSTSSSSDGASYVDMLYSVNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGLQQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDQDAQKTTVRLHTLVIRSTRWRKS 125
            MSTSSSSDGASYVDMLYSVNDSNFGIPDRCPCGSAIIIQI+TEAAAIPKKYFVCKDFKNDGLQQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDQDAQKTTVRLHTLVIRSTRWRKS
Sbjct:  201 MSTSSSSDGASYVDMLYSVNDSNFGIPDRCPCGSAIIIQITTEAAAIPKKYFVCKDFKNDGLQQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDQDAQKTTVRLHTLVIRSTRWRKS 325          
BLAST of Bnascaffold706T0000300WE vs. GenBank_protein
Match: CAF1929963.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 230 bits (586), Expect = 6.750e-73
Identity = 119/127 (93.70%), Postives = 123/127 (96.85%), Query Frame = 0
Query:    1 MSTSSSSDGASYVDMLYSVNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGL--QQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDQDAQKTTVRLHTLVIRSTRWRKS 125
            MSTSSSSDGASYVDM+Y+VNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGL  +QEWTAAIEDETRRLKKTVDDHES IRSLGRVEYRIDRID+DAQKTTVRL TLVIRSTRWRKS
Sbjct:  199 MSTSSSSDGASYVDMIYAVNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGLHRKQEWTAAIEDETRRLKKTVDDHESMIRSLGRVEYRIDRIDEDAQKTTVRLQTLVIRSTRWRKS 325          
BLAST of Bnascaffold706T0000300WE vs. GenBank_protein
Match: CAF1931540.1 (unnamed protein product, partial [Brassica napus])

HSP 1 Score: 217 bits (553), Expect = 1.100e-70
Identity = 112/123 (91.06%), Postives = 118/123 (95.93%), Query Frame = 0
Query:    1 MSTSSSSDGASYVDMLYSVNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGL--QQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDQDAQKTTVRLHTLVIRSTR 121
            MSTSSSSDGASYVDMLY++NDSNFGIPDRCPCGSAIIIQISTEA AIPKKYFVCKDFK DGL  +QEWT+A+EDETRRLKKTVDDHESRIRSLGRVEYRIDRID+DAQKTTVRL TLVIRSTR
Sbjct:    1 MSTSSSSDGASYVDMLYAMNDSNFGIPDRCPCGSAIIIQISTEAVAIPKKYFVCKDFKTDGLHRKQEWTSAVEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDEDAQKTTVRLQTLVIRSTR 123          
BLAST of Bnascaffold706T0000300WE vs. GenBank_protein
Match: KAG5375820.1 (hypothetical protein IGI04_040416 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 223 bits (569), Expect = 1.110e-66
Identity = 113/115 (98.26%), Postives = 114/115 (99.13%), Query Frame = 0
Query:    1 MSTSSSSDGASYVDMLYSVNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGLQQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDQDAQKTTVRLHTL 115
            MSTSSSSDGASYVDMLYSVNDSNFGIPDRCPCGSAIIIQI+TEAAAIPKKYFVCKDFKNDGLQQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRID DAQKTTVRLHTL
Sbjct:  232 MSTSSSSDGASYVDMLYSVNDSNFGIPDRCPCGSAIIIQITTEAAAIPKKYFVCKDFKNDGLQQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDHDAQKTTVRLHTL 346          
BLAST of Bnascaffold706T0000300WE vs. GenBank_protein
Match: KAF3585944.1 (hypothetical protein F2Q69_00029171 [Brassica cretica])

HSP 1 Score: 223 bits (568), Expect = 1.280e-66
Identity = 114/120 (95.00%), Postives = 117/120 (97.50%), Query Frame = 0
Query:    8 DGASYVDMLYSVNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGL--QQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDQDAQKTTVRLHTLVIRSTRWRKS 125
            DGASYVDMLY+VNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGL  +QEWTAAIEDETRRLKKTV+DHESRIRSLGRVEYRIDRIDQDAQKTTVRL TLVIRSTRWRKS
Sbjct:  557 DGASYVDMLYAVNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGLHRKQEWTAAIEDETRRLKKTVEDHESRIRSLGRVEYRIDRIDQDAQKTTVRLQTLVIRSTRWRKS 676          
BLAST of Bnascaffold706T0000300WE vs. GenBank_protein
Match: CAF1706473.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 201 bits (512), Expect = 4.000e-64
Identity = 103/109 (94.50%), Postives = 107/109 (98.17%), Query Frame = 0
Query:    1 MSTSSSSDGASYVDMLYSVNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGL--QQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDQDAQK 107
            MSTSSSSDGASYVDMLY++NDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGL  +QEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRID+DAQK
Sbjct:    1 MSTSSSSDGASYVDMLYAMNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGLHRKQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDEDAQK 109          
BLAST of Bnascaffold706T0000300WE vs. GenBank_protein
Match: KAF3515012.1 (hypothetical protein F2Q69_00006144 [Brassica cretica])

HSP 1 Score: 201 bits (510), Expect = 8.060e-64
Identity = 103/109 (94.50%), Postives = 106/109 (97.25%), Query Frame = 0
Query:    1 MSTSSSSDGASYVDMLYSVNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGL--QQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDQDAQK 107
            MSTSSSSDGASYVDMLY+VNDSNFGIPD CPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGL  +QEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRID+DAQK
Sbjct:    1 MSTSSSSDGASYVDMLYAVNDSNFGIPDHCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGLHRKQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDEDAQK 109          
BLAST of Bnascaffold706T0000300WE vs. GenBank_protein
Match: CDY58075.1 (BnaAnng14990D [Brassica napus])

HSP 1 Score: 199 bits (507), Expect = 2.310e-63
Identity = 103/109 (94.50%), Postives = 106/109 (97.25%), Query Frame = 0
Query:    1 MSTSSSSDGASYVDMLYSVNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGL--QQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDQDAQK 107
            MSTSSSSDGASYVDMLY+VNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGL  +QEWTAAIEDETR LKKTVDDHESRIRSLGRVEYRIDRID+DAQK
Sbjct:    1 MSTSSSSDGASYVDMLYAVNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGLHRKQEWTAAIEDETRCLKKTVDDHESRIRSLGRVEYRIDRIDEDAQK 109          
BLAST of Bnascaffold706T0000300WE vs. GenBank_protein
Match: KAG2277587.1 (hypothetical protein Bca52824_060142 [Brassica carinata])

HSP 1 Score: 199 bits (505), Expect = 4.660e-63
Identity = 101/109 (92.66%), Postives = 106/109 (97.25%), Query Frame = 0
Query:    1 MSTSSSSDGASYVDMLYSVNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGL--QQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDRIDQDAQK 107
            MSTSSSSDGASYVDMLY++NDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGL  +QEWTAAIEDETRRLKKTVDDHESRIRS GRVEYRIDRID+D+QK
Sbjct:    1 MSTSSSSDGASYVDMLYAMNDSNFGIPDRCPCGSAIIIQISTEAAAIPKKYFVCKDFKNDGLHIKQEWTAAIEDETRRLKKTVDDHESRIRSFGRVEYRIDRIDEDSQK 109          
The following BLAST results are available for this feature:
BLAST of Bnascaffold706T0000300WE vs. GenBank_protein
Analysis Date: 2022-04-13 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
VDD23498.14.980e-8198.40unnamed protein product [Brassica rapa][more]
CAF2321337.12.380e-7899.20unnamed protein product [Brassica napus][more]
CAF1929963.16.750e-7393.70unnamed protein product [Brassica napus][more]
CAF1931540.11.100e-7091.06unnamed protein product, partial [Brassica napus][more]
KAG5375820.11.110e-6698.26hypothetical protein IGI04_040416 [Brassica rapa s... [more]
KAF3585944.11.280e-6695.00hypothetical protein F2Q69_00029171 [Brassica cret... [more]
CAF1706473.14.000e-6494.50unnamed protein product [Brassica napus][more]
KAF3515012.18.060e-6494.50hypothetical protein F2Q69_00006144 [Brassica cret... [more]
CDY58075.12.310e-6394.50BnaAnng14990D [Brassica napus][more]
KAG2277587.14.660e-6392.66hypothetical protein Bca52824_060142 [Brassica car... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold706contigscaffold706:12449..12901 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-04-13 .72417
Diamond on OGS1.0 vs NR2022-04-13 .782894
Brassica napus Westar OGS1.02022-04-13 .642364
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Bnascaffold706T0000300WEBnascaffold706T0000300WEBrassica napus WestarmRNAscaffold706 12449..12901 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Bnascaffold706T0000300WE-P ID=Bnascaffold706T0000300WE-P|Name=Bnascaffold706T0000300WE|organism=Brassica napus Westar|type=polypeptide|length=126bp
MSTSSSSDGASYVDMLYSVNDSNFGIPDRCPCGSAIIIQISTEAAAIPKK
YFVCKDFKNDGLQQEWTAAIEDETRRLKKTVDDHESRIRSLGRVEYRIDR
IDQDAQKTTVRLHTLVIRSTRWRKS.
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