Bnascaffold610T0000400WE-P (polypeptide) Brassica napus Westar

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBnascaffold610T0000400WE
Unique NameBnascaffold610T0000400WE-P
Typepolypeptide
OrganismBrassica napus Westar (cv. Westar, rapeseed)
Sequence length159
Homology
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BLAST of Bnascaffold610T0000400WE vs. GenBank_protein
Match: KAF8053482.1 (hypothetical protein N665_1411s0013 [Sinapis alba])

HSP 1 Score: 78.2 bits (191), Expect = 1.490e-15
Identity = 39/74 (52.70%), Postives = 42/74 (56.76%), Query Frame = 0 
Query:    7 TLGWVARSAFGEHRSACLFCRRYAPGLNWPG------------------------------FRSYCVGLRDRSN 50
            TLGWVARSAFGEHR AC FCRRYAPGLNWPG                              FRSYCVGLRD+++
Sbjct:   13 TLGWVARSAFGEHRLACPFCRRYAPGLNWPGRASGAVTLKKLECSKQAYALYTLAWDNIIGFRSYCVGLRDQTS 86
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BLAST of Bnascaffold610T0000400WE vs. GenBank_protein
Match: KAF2123271.1 (hypothetical protein P153DRAFT_179268 [Dothidotthia symphoricarpi CBS 119687])

HSP 1 Score: 75.5 bits (184), Expect = 5.830e-15
Identity = 37/48 (77.08%), Postives = 37/48 (77.08%), Query Frame = 0 
Query:   96 KTIRYRPSLNHKRCRPGISGCCFXDSAGTLXEIKVFGFRGEYGRKAET 143
            KTIRYR SLN K CR GI  C F DS GTL EIKVFGF GEYGRKAET
Sbjct:    5 KTIRYRRSLNRKLCRLGIGRCSFSDSLGTLREIKVFGFWGEYGRKAET 52
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BLAST of Bnascaffold610T0000400WE vs. GenBank_protein
Match: PWY62173.1 (hypothetical protein BO70DRAFT_406767, partial [Aspergillus heteromorphus CBS 117.55])

HSP 1 Score: 75.1 bits (183), Expect = 8.630e-15
Identity = 38/54 (70.37%), Postives = 39/54 (72.22%), Query Frame = 0 
Query:   90 TKVGGSKTIRYRPSLNHKRCRPGISGCCFXDSAGTLXEIKVFGFRGEYGRKAET 143
            TKV GSKTIRYR SLNHK CR GI  C + D  GTL EIKVFGF G   RKAET
Sbjct:    1 TKVRGSKTIRYRRSLNHKLCRLGIGRCFYYDPFGTLREIKVFGFWGSMVRKAET 54
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BLAST of Bnascaffold610T0000400WE vs. GenBank_protein
Match: CQB88529.1 (Uncharacterised protein [Chlamydia trachomatis])

HSP 1 Score: 73.2 bits (178), Expect = 4.150e-14
Identity = 35/46 (76.09%), Postives = 36/46 (78.26%), Query Frame = 0 
Query:   98 IRYRPSLNHKRCRPGISGCCFXDSAGTLXEIKVFGFRGEYGRKAET 143
            IRYR SLNHK CR GI  C F D+ GTL EIKVFGF GEYGRKAET
Sbjct:    2 IRYRRSLNHKLCRLGIGCCSFIDAIGTLREIKVFGFWGEYGRKAET 47
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BLAST of Bnascaffold610T0000400WE vs. GenBank_protein
Match: MZZ63249.1 (hypothetical protein [Enterococcus mundtii])

HSP 1 Score: 72.4 bits (176), Expect = 8.270e-14
Identity = 35/46 (76.09%), Postives = 35/46 (76.09%), Query Frame = 0 
Query:   98 IRYRPSLNHKRCRPGISGCCFXDSAGTLXEIKVFGFRGEYGRKAET 143
            IRYR SLNHK CR GI  C F D  GTL EIKVFGF GEYGRKAET
Sbjct:    2 IRYRRSLNHKLCRLGIGWCFFNDPLGTLREIKVFGFWGEYGRKAET 47
[Close]
BLAST of Bnascaffold610T0000400WE vs. GenBank_protein
Match: RXI09690.1 (hypothetical protein DVH24_014697 [Malus domestica])

HSP 1 Score: 75.1 bits (183), Expect = 1.120e-13
Identity = 42/79 (53.16%), Postives = 42/79 (53.16%), Query Frame = 0 
Query:    3 ARSXTLGWVARSAFGEHRSACLFCRRYAPGLNWPG------------------------------FRSYCVGLRDRSND 51
            ARS TLGWV RSA G HRSA  FCRRYAPGLNWPG                              FRSY VGLRDRSND
Sbjct:   78 ARSWTLGWVDRSASGVHRSARPFCRRYAPGLNWPGRASGAVTLKKLECSKQAYALNTLAWDNIIGFRSYSVGLRDRSND 156
[Close]
BLAST of Bnascaffold610T0000400WE vs. GenBank_protein
Match: RAN66223.1 (hypothetical protein B5P40_32165, partial [Bacillus sp. SRB_8])

HSP 1 Score: 70.1 bits (170), Expect = 1.440e-12
Identity = 39/79 (49.37%), Postives = 40/79 (50.63%), Query Frame = 0 
Query:    3 ARSXTLGWVARSAFGEHRSACLFCRRYAPGLNWPG------------------------------FRSYCVGLRDRSND 51
            ARS TLGW  RSA G HRS+  FCRR APGLNWPG                              FRSY VGLRDRSND
Sbjct:    1 ARSWTLGWAGRSALGVHRSSRPFCRRCAPGLNWPGRASGAVTLKKLECSKQAYALYTLAWDNIIGFRSYYVGLRDRSND 79
[Close]
BLAST of Bnascaffold610T0000400WE vs. GenBank_protein
Match: RXI09570.1 (hypothetical protein DVH24_033638 [Malus domestica])

HSP 1 Score: 68.9 bits (167), Expect = 4.050e-12
Identity = 38/74 (51.35%), Postives = 38/74 (51.35%), Query Frame = 0 
Query:    8 LGWVARSAFGEHRSACLFCRRYAPGLNWPG------------------------------FRSYCVGLRDRSND 51
            LGWV RSA G HRSA  FCRRYAPGLNWPG                              FRSY VGLRDRSND
Sbjct:    6 LGWVDRSASGVHRSARPFCRRYAPGLNWPGRASGAVTLKKLECSKQAYALNTLAWDNIIGFRSYSVGLRDRSND 79
[Close]
BLAST of Bnascaffold610T0000400WE vs. GenBank_protein
Match: PKX88299.1 (hypothetical protein P174DRAFT_380670, partial [Aspergillus novofumigatus IBT 16806])

HSP 1 Score: 68.2 bits (165), Expect = 6.240e-12
Identity = 33/46 (71.74%), Postives = 34/46 (73.91%), Query Frame = 0 
Query:   90 TKVGGSKTIRYRPSLNHKRCRPGISGCCFXDSAGTLXEIKVFGFRG 135
            TKV GSKTIRYR SLNHK CR GI  C + D  GTL EIKVFGF G
Sbjct:    1 TKVRGSKTIRYRRSLNHKLCRLGIGRCFYDDPLGTLREIKVFGFWG 46
[Close]
BLAST of Bnascaffold610T0000400WE vs. GenBank_protein
Match: KYB24678.1 (hypothetical protein TcasGA2_TC031862 [Tribolium castaneum])

HSP 1 Score: 68.2 bits (165), Expect = 6.910e-12
Identity = 33/54 (61.11%), Postives = 37/54 (68.52%), Query Frame = 0 
Query:   90 TKVGGSKTIRYRPSLNHKRCRPGISGCCFXDSAGTLXEIKVFGFRGEYGRKAET 143
            TKV GSK I YRPS N KRC+  I  C   DSAG+  E + FGFRG+YG KAET
Sbjct:   20 TKVRGSKAIGYRPSSNDKRCQLAIRRCSSDDSAGSFRETQAFGFRGKYGCKAET 73
The following BLAST results are available for this feature:
BLAST of Bnascaffold610T0000400WE vs. GenBank_protein
Analysis Date: 2022-04-13 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
KAF8053482.11.490e-1552.70hypothetical protein N665_1411s0013 [Sinapis alba][more]
KAF2123271.15.830e-1577.08hypothetical protein P153DRAFT_179268 [Dothidotthi... [more]
PWY62173.18.630e-1570.37hypothetical protein BO70DRAFT_406767, partial [As... [more]
CQB88529.14.150e-1476.09Uncharacterised protein [Chlamydia trachomatis][more]
MZZ63249.18.270e-1476.09hypothetical protein [Enterococcus mundtii][more]
RXI09690.11.120e-1353.16hypothetical protein DVH24_014697 [Malus domestica... [more]
RAN66223.11.440e-1249.37hypothetical protein B5P40_32165, partial [Bacillu... [more]
RXI09570.14.050e-1251.35hypothetical protein DVH24_033638 [Malus domestica... [more]
PKX88299.16.240e-1271.74hypothetical protein P174DRAFT_380670, partial [As... [more]
KYB24678.16.910e-1261.11hypothetical protein TcasGA2_TC031862 [Tribolium c... [more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1900016 negative regulation of cytokine production involved in inflammatory response
biological_process GO:0050680 negative regulation of epithelial cell proliferation
biological_process GO:0048147 negative regulation of fibroblast proliferation
biological_process GO:0043124 negative regulation of I-kappaB kinase/NF-kappaB signaling
biological_process GO:0050728 negative regulation of inflammatory response
biological_process GO:0045824 negative regulation of innate immune response
biological_process GO:0032687 negative regulation of interferon-alpha production
biological_process GO:0032688 negative regulation of interferon-beta production
biological_process GO:0032695 negative regulation of interleukin-12 production
biological_process GO:0032691 negative regulation of interleukin-1 beta production
biological_process GO:0032715 negative regulation of interleukin-6 production
biological_process GO:0032088 negative regulation of NF-kappaB transcription factor activity
biological_process GO:1901223 negative regulation of NIK/NF-kappaB signaling
biological_process GO:1900226 negative regulation of NLRP3 inflammasome complex assembly
biological_process GO:0014067 negative regulation of phosphatidylinositol 3-kinase signaling
biological_process GO:0032720 negative regulation of tumor necrosis factor production
biological_process GO:0031396 regulation of protein ubiquitination
biological_process GO:0032496 response to lipopolysaccharide
biological_process GO:0042110 T cell activation
cellular_component GO:0034451 centriolar satellite
cellular_component GO:0005829 cytosol
cellular_component GO:0043231 intracellular membrane-bounded organelle
cellular_component GO:0048471 perinuclear region of cytoplasm
molecular_function GO:0036312 phosphatidylinositol 3-kinase regulatory subunit binding
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold610contigscaffold610:12118..12686 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-04-13 .72417
Blast2go on OGS1.02022-04-13 .735315
Diamond on OGS1.0 vs NR2022-04-13 .782894
Brassica napus Westar OGS1.02022-04-13 .642364
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Bnascaffold610T0000400WEBnascaffold610T0000400WEBrassica napus WestarmRNAscaffold610 12118..12686 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Bnascaffold610T0000400WE-P ID=Bnascaffold610T0000400WE-P|Name=Bnascaffold610T0000400WE|organism=Brassica napus Westar|type=polypeptide|length=159bp
.KARS.TLGWVARSAFGEHRSACLFCRRYAPGLNWPGFRSYCVGLRDRSN
D.QGQSGAFVFHSQR.NS.DL.KTNNCESICQGCFH.SRTKVGGSKTIRY
RPSLNHKRCRPGISGCCF.DSAGTL.EIKVFGFRGEYGRKAET.RN.RKG
TTRSGACGL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
TermDefinition
GO:0032688negative regulation of interferon-beta production
GO:0032720negative regulation of tumor necrosis factor production
GO:0032687negative regulation of interferon-alpha production
GO:0032695negative regulation of interleukin-12 production
GO:0032496response to lipopolysaccharide
GO:0031396regulation of protein ubiquitination
GO:0050680negative regulation of epithelial cell proliferation
GO:0048147negative regulation of fibroblast proliferation
GO:0032715negative regulation of interleukin-6 production
GO:0045824negative regulation of innate immune response
GO:1900226negative regulation of NLRP3 inflammasome complex assembly
GO:0043124negative regulation of I-kappaB kinase/NF-kappaB signaling
GO:1900016negative regulation of cytokine production involved in inflammatory response
GO:1901223negative regulation of NIK/NF-kappaB signaling
GO:0042110T cell activation
GO:0032691negative regulation of interleukin-1 beta production
GO:0050728negative regulation of inflammatory response
GO:0032088negative regulation of NF-kappaB transcription factor activity
GO:0014067negative regulation of phosphatidylinositol 3-kinase signaling
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0043231intracellular membrane-bounded organelle
GO:0048471perinuclear region of cytoplasm
GO:0034451centriolar satellite
Vocabulary: Molecular Function
TermDefinition
GO:0036312phosphatidylinositol 3-kinase regulatory subunit binding