Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BnaA01G0046000WE | BnaA01G0046000WE | Brassica napus Westar | gene | westarv0_A01 2918979..2921043 + |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BnaA01T0046000WE.exon1 | BnaA01T0046000WE.exon1 | Brassica napus Westar | exon | westarv0_A01 2918979..2919028 + |
| BnaA01T0046000WE.exon2 | BnaA01T0046000WE.exon2 | Brassica napus Westar | exon | westarv0_A01 2919264..2919442 + |
| BnaA01T0046000WE.exon3 | BnaA01T0046000WE.exon3 | Brassica napus Westar | exon | westarv0_A01 2919745..2919930 + |
| BnaA01T0046000WE.exon4 | BnaA01T0046000WE.exon4 | Brassica napus Westar | exon | westarv0_A01 2920018..2920159 + |
| BnaA01T0046000WE.exon5 | BnaA01T0046000WE.exon5 | Brassica napus Westar | exon | westarv0_A01 2920613..2920845 + |
| BnaA01T0046000WE.exon6 | BnaA01T0046000WE.exon6 | Brassica napus Westar | exon | westarv0_A01 2921015..2921043 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| cds.BnaA01T0046000WE | cds.BnaA01T0046000WE | Brassica napus Westar | CDS | westarv0_A01 2918979..2919028 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >BnaA01T0046000WE ID=BnaA01T0046000WE|Name=BnaA01T0046000WE|organism=Brassica napus Westar|type=mRNA|length=819bp|location=Sequence derived from alignment at westarv0_A01:2918979..2921043+ (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.
ATGAAATACCTCACAGACTCAGGCCTAATATTTCTAATCAAACTTTTTTG
TGTGGTTTTTGTCAAGCCGGAGCCAAAGCGCCAGACATATCCATGCCTTG
GACAAGGCCATCAAACTTCACGTCCTGCCGGAGAAACACCTCATGACACT
GCCAGAGAGTTGGAACCATCACGCGCCTTGGAGGAAGACGATGGTAATGG
AGAGTCAAACGCAAACACTGGTGGCTTTGGGGAGCAGATTCAGATCCTTG
CAGTTGCATGCTTATCTGAGAGTAAAGGGGACGCCGAGATTATCACCCTT
TTTAAAGTTGCTGAGGTGATGAACAAAACTTTACAGAGAAATCTCTCTGA
CAATGGGAGTACACCATCAGGGGATGGGGAATTGAGCCCTGATGGTCAGT
TTGCAACTCAGAACGAAGAACATAAGACTTCCTTTCCAGGTTTCAGAAGT
CTCATTTCTTTGTTAGGATCGCAGAGTCTGGTGAGCCGCTTTGGTCAAAG
AAACCTCTGTGTTGGGAGATACAAAGCTAGTGGAAAAGCGGGAAAAAGAG
ACCTTGTAAGCTACTCCATGTTCGCTCTGCCGGCGCCGAACACTGCACCA
GTTACTGGACCCGTAAAAACTGAAAGCTCCAAACCATCATTTGACCTTGA
AGACTGGAACTGTTACTCAGGTCAAACATTATGGAACGGTCACAAGTCTG
GGACTGAAGAGCTCTTATCTTTCCGGGGTGTCCCTTTGGAGCGGGATAAA
TTCTCTGTTCGTTGTGGACTTGAAGGCATATGCATTCCTGGTTCAATCTT
GACGGACAAGAGGAAATAG back to topprotein sequence of BnaA01T0046000WE >BnaA01T0046000WE-P ID=BnaA01T0046000WE-P|Name=BnaA01T0046000WE|organism=Brassica napus Westar|type=polypeptide|length=273bp
MKYLTDSGLIFLIKLFCVVFVKPEPKRQTYPCLGQGHQTSRPAGETPHDT
ARELEPSRALEEDDGNGESNANTGGFGEQIQILAVACLSESKGDAEIITL
FKVAEVMNKTLQRNLSDNGSTPSGDGELSPDGQFATQNEEHKTSFPGFRS
LISLLGSQSLVSRFGQRNLCVGRYKASGKAGKRDLVSYSMFALPAPNTAP
VTGPVKTESSKPSFDLEDWNCYSGQTLWNGHKSGTEELLSFRGVPLERDK
FSVRCGLEGICIPGSILTDKRK. back to topmRNA from alignment at westarv0_A01:2918979..2921043+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >BnaA01T0046000WE ID=BnaA01T0046000WE|Name=BnaA01T0046000WE|organism=Brassica napus Westar|type=mRNA|length=2065bp|location=Sequence derived from alignment at westarv0_A01:2918979..2921043+ (Brassica napus Westar)
ATGAAATACCTCACAGACTCAGGCCTAATATTTCTAATCAAACTTTTTTG
GTATTTTGTGGTAGTTATCATTTTTGATTTCCATTCCTCTGTCTATCTCC
TCTCTTCAAGTATATAATACCTTCCAACTCATACATAGATGTTTGTCAAA
GAATATACCGTCTCTGCTTAGGCGTGAGTCTCGATTTCGTTATCAGTAAC
TGTTTTATTGTTTTCGTTGTGAGACGAAGAAAGTGGTAGGAAGTATTGAA
ATACTAAAAATTTTTTACTTTTGTTTTAAAATTAGTGTGGTTTTTGTCAA
GCCGGAGCCAAAGCGCCAGACATATCCATGCCTTGGACAAGGCCATCAAA
CTTCACGTCCTGCCGGAGAAACACCTCATGACACTGCCAGAGAGTTGGAA
CCATCACGCGCCTTGGAGGAAGACGATGGTAATGGAGAGTCAAACGCAAA
CACTGGTGGCTTTGGTATGAGGAGGTTCTAAGATGTGTCTGAGGAAGAAG
GATGGATCTATGTTCCATATAGTATAATATCCAATTTTGAAAGTTTTGAA
GTTTACCTTCTTCTCTACTTAATCTAATGTGGTGGTGATGTCTTCTTATT
ACAGAGGAGATCCCGGATAACTGGTCTGAGTCTGTTGAGATTCAGTCATT
ACGTCTCTGGATCGCTCCTTTGTGTTTACTGGTATATGCTCTGTCTCTCA
GATGTTTCATCATTTAAAACTGATACAAACTGTTGTAACATCAGAGGCAT
TTGTTTCTACTTACAGGGGAGCAGATTCAGATCCTTGCAGTTGCATGCTT
ATCTGAGAGTAAAGGGGACGCCGAGATTATCACCCTTTTTAAAGTTGCTG
AGGTGATGAACAAAACTTTACAGAGAAATCTCTCTGACAATGGGAGTACA
CCATCAGGGGATGGGGAATTGAGCCCTGATGGTCAGTTTGCAACTCAGAA
CGGTGACAGTCCTGGTAAAGAGAGTTTGGATTCACAAAAAGGACGTATCT
AATGGCGAATCAATTTTCAGGATGGAAGATCAATAAGAGAAGAACATAAG
ACTTCCTTTCCAGGTTTCAGAAGTCTCATTTCTTTGTTAGGATCGCAGAG
TCTGGTGAGCCGCTTTGGTCAAAGAAACCTCTGTGTTGGGAGATACAAAG
CTAGTGGAAAAGCGGGAAAAAGAGACCTTGTGTTAGTGCTTTTTTAGATA
GAGGAGAGTTTGATCTTAATGTTGCTGGAGGTGTAGCAAGAAGTAAGGCA
AAATGTTGTGCCTTACCCAATGGAGACACATGATGGTAATTCTTATAAGT
TGTTTTCTTAACCTACTGATTCTCACACAATGCCTTTATTTGGAAGGGCG
AAGGTCTCTTTACAAGTTTATATCGTTGACTGTCCCAAAGAACCAATCAT
TGAGATACTGCAGTTTGAGAAGCATCAAGACATGGACCAACTTTCTGATC
ATGAACACAAGGATCCATATGGGAACCTTTTGAAGCGGTTGATACCGTTG
GATAACACTATTTCTCAGCAACCCCGTTCTTTACCACCTCCTATAAGCTC
TACCCCAGATATCAGCAGCAGTGCACACAAGCCATTACTCTCTTCTGGCT
CAGGATCTCAGCTCTTCTCATTCGTCCATTTTAGAAGCTACTCCATGTTC
GCTCTGCCGGCGCCGAACACTGCACCAGTTACTGGACCCGTAAAAACTGA
AAGCTCCAAACCATCATTTGACCTTGAAGACTGGAACTGTTACTCAGGTC
AAACATTATGGAACGGTCACAAGTCTGGGACTGAAGAGCTCTTATCTTTC
CGGGGTGTCCCTTTGGAGCGGGATAAATTCTCTGTTCGTTGTGGACTTGA
AGGCATATGCATTCCTGGTAAGAAGATGGAGGAAGAAACTTTTGATATCA
ATTCTTTTACTGCTGATTGTAATACAGATAAACATTTAATATAAATAGTT
TTAAATTTTTATAATAAATTCTAATGTATATATGTAACATGGTCATATTT
AATATAATATGGGTATATTTTGTGAACTCTTTGGAGGTTCAATCTTGACG
GACAAGAGGAAATAG back to topCoding sequence (CDS) from alignment at westarv0_A01:2918979..2921043+ >BnaA01T0046000WE ID=BnaA01T0046000WE|Name=BnaA01T0046000WE|organism=Brassica napus Westar|type=CDS|length=819bp|location=Sequence derived from alignment at westarv0_A01:2918979..2921043+ (Brassica napus Westar)
ATGAAATACCTCACAGACTCAGGCCTAATATTTCTAATCAAACTTTTTTG
TGTGGTTTTTGTCAAGCCGGAGCCAAAGCGCCAGACATATCCATGCCTTG
GACAAGGCCATCAAACTTCACGTCCTGCCGGAGAAACACCTCATGACACT
GCCAGAGAGTTGGAACCATCACGCGCCTTGGAGGAAGACGATGGTAATGG
AGAGTCAAACGCAAACACTGGTGGCTTTGGGGAGCAGATTCAGATCCTTG
CAGTTGCATGCTTATCTGAGAGTAAAGGGGACGCCGAGATTATCACCCTT
TTTAAAGTTGCTGAGGTGATGAACAAAACTTTACAGAGAAATCTCTCTGA
CAATGGGAGTACACCATCAGGGGATGGGGAATTGAGCCCTGATGGTCAGT
TTGCAACTCAGAACGAAGAACATAAGACTTCCTTTCCAGGTTTCAGAAGT
CTCATTTCTTTGTTAGGATCGCAGAGTCTGGTGAGCCGCTTTGGTCAAAG
AAACCTCTGTGTTGGGAGATACAAAGCTAGTGGAAAAGCGGGAAAAAGAG
ACCTTGTAAGCTACTCCATGTTCGCTCTGCCGGCGCCGAACACTGCACCA
GTTACTGGACCCGTAAAAACTGAAAGCTCCAAACCATCATTTGACCTTGA
AGACTGGAACTGTTACTCAGGTCAAACATTATGGAACGGTCACAAGTCTG
GGACTGAAGAGCTCTTATCTTTCCGGGGTGTCCCTTTGGAGCGGGATAAA
TTCTCTGTTCGTTGTGGACTTGAAGGCATATGCATTCCTGGTTCAATCTT
GACGGACAAGAGGAAATAG back to top
|