C09p75680.1_BnaDARv10-PA (polypeptide) Brassica napus

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameC09p75680.1_BnaDARv10-RA
Unique NameC09p75680.1_BnaDARv10-PA
Typepolypeptide
OrganismBrassica napus (cv. Darmor-bzh, rapeseed)
Sequence length251
Homology
[Close]
BLAST of C09p75680.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013584599.1 (PREDICTED: developmental protein SEPALLATA 2 [Brassica oleracea var. oleracea] >AGT20512.1 SEP2.b [Brassica oleracea var. viridis] >CDY43239.1 BnaC05g48320D [Brassica napus])

HSP 1 Score: 499 bits (1284), Expect = 3.830e-178
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0 
Query:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERRLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIGVRSHQIGGAWEGGDQQNVAYGHHQAQSQGLFQSLECDPTLQIGYSHPVCSEQMAVTTQGQNQPGNGYIPGWML 250
            MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERRLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIGVRSHQIGGAWEGGDQQNVAYGHHQAQSQGLFQSLECDPTLQIGYSHPVCSEQMAVTTQGQNQPGNGYIPGWML
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERRLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIGVRSHQIGGAWEGGDQQNVAYGHHQAQSQGLFQSLECDPTLQIGYSHPVCSEQMAVTTQGQNQPGNGYIPGWML 250
[Close]
BLAST of C09p75680.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_009147359.1 (developmental protein SEPALLATA 2 [Brassica rapa] >VDC73430.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 487 bits (1253), Expect = 2.040e-173
Identity = 242/250 (96.80%), Postives = 246/250 (98.40%), Query Frame = 0 
Query:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERRLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIGVRSHQIGGAWEGGDQQNVAYGHHQAQSQGLFQSLECDPTLQIGYSHPVCSEQMAVTTQGQNQPGNGYIPGWML 250
            MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLER+LDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIG+RSH +GGAWEGGDQQNVAYGHHQ Q QGLFQSLECDPTLQIGY+HPVCSEQMAVTTQGQ QPGNGYIPGWML
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIGMRSHHVGGAWEGGDQQNVAYGHHQTQPQGLFQSLECDPTLQIGYNHPVCSEQMAVTTQGQTQPGNGYIPGWML 250
[Close]
BLAST of C09p75680.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013678402.1 (developmental protein SEPALLATA 2 [Brassica napus] >RID64663.1 hypothetical protein BRARA_E03583 [Brassica rapa])

HSP 1 Score: 485 bits (1249), Expect = 8.310e-173
Identity = 241/250 (96.40%), Postives = 246/250 (98.40%), Query Frame = 0 
Query:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERRLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIGVRSHQIGGAWEGGDQQNVAYGHHQAQSQGLFQSLECDPTLQIGYSHPVCSEQMAVTTQGQNQPGNGYIPGWML 250
            MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLER+LDGSLKQVRCIKTQYMLDQLTDLQGKEH+LLEANRALSIKLEDMIG+RSH +GGAWEGGDQQNVAYGHHQ Q QGLFQSLECDPTLQIGY+HPVCSEQMAVTTQGQ QPGNGYIPGWML
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLTDLQGKEHILLEANRALSIKLEDMIGMRSHHVGGAWEGGDQQNVAYGHHQTQPQGLFQSLECDPTLQIGYNHPVCSEQMAVTTQGQTQPGNGYIPGWML 250
[Close]
BLAST of C09p75680.1_BnaDARv10-RA vs. GenBank_protein
Match: CDY57524.1 (BnaA05g33600D [Brassica napus])

HSP 1 Score: 485 bits (1248), Expect = 1.180e-172
Identity = 241/250 (96.40%), Postives = 246/250 (98.40%), Query Frame = 0 
Query:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERRLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIGVRSHQIGGAWEGGDQQNVAYGHHQAQSQGLFQSLECDPTLQIGYSHPVCSEQMAVTTQGQNQPGNGYIPGWML 250
            MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLER+LDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIG+RSH +GGAWEGGDQQNVAYGHHQ Q QGLFQSLECDPTLQIGY+HPVCSEQMAVTTQG +QPGNGYIPGWML
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIGMRSHHVGGAWEGGDQQNVAYGHHQTQPQGLFQSLECDPTLQIGYNHPVCSEQMAVTTQGPSQPGNGYIPGWML 250
[Close]
BLAST of C09p75680.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_018490821.1 (PREDICTED: developmental protein SEPALLATA 2 [Raphanus sativus])

HSP 1 Score: 484 bits (1247), Expect = 1.680e-172
Identity = 240/250 (96.00%), Postives = 246/250 (98.40%), Query Frame = 0 
Query:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERRLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIGVRSHQIGGAWEGGDQQNVAYGHHQAQSQGLFQSLECDPTLQIGYSHPVCSEQMAVTTQGQNQPGNGYIPGWML 250
            MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGS+EVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLER+LDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALS+KLEDMIG+RSH +GG WEGGDQQNVAYGHHQ QSQGLFQSLECDPTLQIGY+HPVCSEQMAVTTQGQ QPGNGYIPGWML
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSMKLEDMIGMRSHHVGGTWEGGDQQNVAYGHHQTQSQGLFQSLECDPTLQIGYNHPVCSEQMAVTTQGQIQPGNGYIPGWML 250
[Close]
BLAST of C09p75680.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_006408426.1 (developmental protein SEPALLATA 2 isoform X1 [Eutrema salsugineum] >ESQ49879.1 hypothetical protein EUTSA_v10021390mg [Eutrema salsugineum])

HSP 1 Score: 481 bits (1238), Expect = 3.950e-171
Identity = 239/250 (95.60%), Postives = 248/250 (99.20%), Query Frame = 0 
Query:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERRLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIGVRSHQIGGAWEGGDQQNVAYGHHQAQSQGLFQSLECDPTLQIGYSHPVCSEQMAVTTQGQNQPGNGYIPGWML 250
            MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCS+SNMLKTL+RYQKCSYGS+EVNNKPAKELENSYREYLKLKGRYENLQ QQRNLLGEDLGPLNSKELEQLER+LDGSLKQVRCIKTQYMLDQLTDLQGKEH+LLEANRALS+KLEDMIGVRSH IGGAWEGGDQQNVAYGHHQAQSQGLFQSLECDPTLQIGY++PVCSEQMAVTTQGQ+QPGNGYIPGWML
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSSSNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLTDLQGKEHILLEANRALSMKLEDMIGVRSHHIGGAWEGGDQQNVAYGHHQAQSQGLFQSLECDPTLQIGYNNPVCSEQMAVTTQGQSQPGNGYIPGWML 250
[Close]
BLAST of C09p75680.1_BnaDARv10-RA vs. GenBank_protein
Match: CAA7038589.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 476 bits (1225), Expect = 3.790e-169
Identity = 237/250 (94.80%), Postives = 245/250 (98.00%), Query Frame = 0 
Query:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERRLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIGVRSHQIGGAWEGGDQQNVAYGHHQAQSQGLFQSLECDPTLQIGYSHPVCSEQMAVTTQGQNQPGNGYIPGWML 250
            MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTL+RYQKCSYGS+EVNNKPAKELENSYREYLKLKGRYENLQ QQRNLLGEDLGPLNSKELEQLER+LDGSLKQVRCIKTQYMLDQLTDLQGKEH+LLEANRALS+KLEDMIGVRSH IGGAWEG DQQNVAYGHHQAQ+QGLFQSL+CDPTLQIGY+HPVCSEQMAVTTQGQ Q GNGYIPGWML
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLTDLQGKEHILLEANRALSMKLEDMIGVRSHHIGGAWEGDDQQNVAYGHHQAQNQGLFQSLQCDPTLQIGYNHPVCSEQMAVTTQGQPQQGNGYIPGWML 250
[Close]
BLAST of C09p75680.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_010485469.1 (PREDICTED: developmental protein SEPALLATA 2 [Camelina sativa])

HSP 1 Score: 475 bits (1223), Expect = 7.640e-169
Identity = 236/250 (94.40%), Postives = 244/250 (97.60%), Query Frame = 0 
Query:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERRLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIGVRSHQIGGAWEGGDQQNVAYGHHQAQSQGLFQSLECDPTLQIGYSHPVCSEQMAVTTQGQNQPGNGYIPGWML 250
            MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTL+RYQKCSYGS+EVNNKPAKELENSYREYLKLKGRYE+LQ QQRNLLGEDLGPLNSKELEQLER+LDGSLKQVRCIKTQYMLDQL+DLQGKEH+LLEANRALSIKLEDMIGVR H IGGAWE GDQQNVAYGHHQA SQGL+QSLECDPTLQIGY HPVCSEQMAVTTQGQ+QPGNGYIPGWML
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYESLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLEANRALSIKLEDMIGVRHHHIGGAWEAGDQQNVAYGHHQAHSQGLYQSLECDPTLQIGYGHPVCSEQMAVTTQGQSQPGNGYIPGWML 250
[Close]
BLAST of C09p75680.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_006298399.1 (developmental protein SEPALLATA 2 isoform X1 [Capsella rubella] >EOA31297.1 hypothetical protein CARUB_v10014470mg [Capsella rubella])

HSP 1 Score: 473 bits (1218), Expect = 4.420e-168
Identity = 234/250 (93.60%), Postives = 241/250 (96.40%), Query Frame = 0 
Query:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERRLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIGVRSHQIGGAWEGGDQQNVAYGHHQAQSQGLFQSLECDPTLQIGYSHPVCSEQMAVTTQGQNQPGNGYIPGWML 250
            MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTL+RYQKCSYGS+EVNNKPAKELENSYREYLKLKGRYENLQ QQRNLLGEDLGPLNSKELEQLER+LDGSLKQVRCIKTQYMLDQL+DLQGKEH+LLEANRALS+KLEDMIGVR H IGGAWE GDQQNV YGHHQA SQGL+QSLECDPTLQIGY HPVCSEQMAV TQG NQPGNGYIPGWML
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLEANRALSVKLEDMIGVRHHHIGGAWEAGDQQNVVYGHHQAHSQGLYQSLECDPTLQIGYGHPVCSEQMAVATQGHNQPGNGYIPGWML 250
[Close]
BLAST of C09p75680.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013647476.1 (developmental protein SEPALLATA 2-like [Brassica napus])

HSP 1 Score: 473 bits (1218), Expect = 4.750e-168
Identity = 240/252 (95.24%), Postives = 247/252 (98.02%), Query Frame = 0 
Query:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERRLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRALSIKLEDMIGVRSHQIGGAWEGGDQQNVAYGHHQAQSQGLFQSLECDPTLQIGYSHPVCSEQMAVTTQGQN-QPGN-GYIPGWML 250
            MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTL+RYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQ QQRNLLGEDLGPLNSKELEQLER+LDGSLKQVRCIKTQYMLDQLTDLQGKEH+LLEANRALS+KLEDMIGVRSHQIGGAWEGGDQ NVAYGHHQAQSQGLFQSLECDPTLQ+GY+HPVCSEQMAVT QGQ+ QPGN GYIPGWML
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLERYQKCSYGSVEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLTDLQGKEHILLEANRALSMKLEDMIGVRSHQIGGAWEGGDQHNVAYGHHQAQSQGLFQSLECDPTLQMGYNHPVCSEQMAVTAQGQSSQPGNNGYIPGWML 252
The following BLAST results are available for this feature:
BLAST of C09p75680.1_BnaDARv10-RA vs. GenBank_protein
Analysis Date: 2021-04-17 (Diamond on Darmor-bzh OGS10 v10 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
XP_013584599.13.830e-178100.00PREDICTED: developmental protein SEPALLATA 2 [Bras... [more]
XP_009147359.12.040e-17396.80developmental protein SEPALLATA 2 [Brassica rapa] ... [more]
XP_013678402.18.310e-17396.40developmental protein SEPALLATA 2 [Brassica napus]... [more]
CDY57524.11.180e-17296.40BnaA05g33600D [Brassica napus][more]
XP_018490821.11.680e-17296.00PREDICTED: developmental protein SEPALLATA 2 [Raph... [more]
XP_006408426.13.950e-17195.60developmental protein SEPALLATA 2 isoform X1 [Eutr... [more]
CAA7038589.13.790e-16994.80unnamed protein product [Microthlaspi erraticum][more]
XP_010485469.17.640e-16994.40PREDICTED: developmental protein SEPALLATA 2 [Came... [more]
XP_006298399.14.420e-16893.60developmental protein SEPALLATA 2 isoform X1 [Caps... [more]
XP_013647476.14.750e-16895.24developmental protein SEPALLATA 2-like [Brassica n... [more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030154 cell differentiation
biological_process GO:0048481 plant ovule development
biological_process GO:0045944 positive regulation of transcription by RNA polymerase II
cellular_component GO:0005634 nucleus
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding
molecular_function GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterProScan on Darmor-bzh OGS10 v10
Date Performed: 2021-04-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 125..145
NoneNo IPR availableCOILSCoilCoilcoord: 85..108
NoneNo IPR availablePANTHERPTHR11945:SF415DEVELOPMENTAL PROTEIN SEPALLATA 2coord: 1..236
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 1..236
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 38..59
score: 64.94
coord: 23..38
score: 86.34
coord: 3..23
score: 68.71
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
e-value: 4.2E-41
score: 152.5
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 10..57
e-value: 1.1E-25
score: 88.8
IPR002100Transcription factor, MADS-boxPROSITEPS00350MADS_BOX_1coord: 3..57
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 1..61
score: 33.319
IPR002487Transcription factor, K-boxPFAMPF01486K-boxcoord: 85..172
e-value: 8.0E-24
score: 83.7
IPR002487Transcription factor, K-boxPROSITEPS51297K_BOXcoord: 88..178
score: 13.827
IPR036879Transcription factor, MADS-box superfamilyGENE3D3.40.1810.10coord: 13..84
e-value: 5.4E-27
score: 95.4
IPR036879Transcription factor, MADS-box superfamilySUPERFAMILY55455SRF-likecoord: 2..79
IPR033896MADS MEF2-likeCDDcd00265MADS_MEF2_likecoord: 2..77
e-value: 4.51938E-46
score: 146.543

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C09_BnaDARv10contigC09_BnaDARv10:66070706..66072768 -    View in Apollo
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on Darmor-bzh OGS10 v102021-04-17
Diamond on Darmor-bzh OGS10 v10 vs NR2021-04-17
Blast2GO on Darmor-bzh OGS10 v102021-04-17
Darmor-bzh OGS10 v102020-07-22
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
C09p75680.1_BnaDARv10-RAC09p75680.1_BnaDARv10-RABrassica napusmRNAC09_BnaDARv10 66070706..66072784 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>C09p75680.1_BnaDARv10-PA ID=C09p75680.1_BnaDARv10-PA|Name=C09p75680.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=251bp
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSN
RGKLYEFCSTSNMLKTLDRYQKCSYGSVEVNNKPAKELENSYREYLKLKG
RYENLQLQQRNLLGEDLGPLNSKELEQLERRLDGSLKQVRCIKTQYMLDQ
LTDLQGKEHMLLEANRALSIKLEDMIGVRSHQIGGAWEGGDQQNVAYGHH
QAQSQGLFQSLECDPTLQIGYSHPVCSEQMAVTTQGQNQPGNGYIPGWML
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033896MADS_MEF2-like
IPR036879TF_MADSbox_sf
IPR002487TF_Kbox
IPR002100TF_MADSbox
Vocabulary: Molecular Function
TermDefinition
GO:0000981RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0046983protein dimerization activity
GO:0000978RNA polymerase II proximal promoter sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0045944positive regulation of transcription by RNA polymerase II
GO:0048481plant ovule development
GO:0030154cell differentiation
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus