C09p74830.1_BnaDARv10-PA (polypeptide) Brassica napus

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameC09p74830.1_BnaDARv10-RA
Unique NameC09p74830.1_BnaDARv10-PA
Typepolypeptide
OrganismBrassica napus (cv. Darmor-bzh, rapeseed)
Sequence length156
Homology
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BLAST of C09p74830.1_BnaDARv10-RA vs. GenBank_protein
Match: CDY69976.1 (BnaUnng03560D [Brassica napus])

HSP 1 Score: 313 bits (801), Expect = 1.190e-107
Identity = 152/155 (98.06%), Postives = 152/155 (98.06%), Query Frame = 0 
Query:    1 MSGDPIVLTAPPHSARMMGWSCWICIPKGLSRVPLLKGQEIIQLTIFGPASFKLWKDEAFETWLTCTQKQTLPKTGFSILLFTCFHVLAIKPELVVQTEPSTDPYGPSIVDEALEAIVVSRETLPCGLSVNRKRAERGLSQLKVIRLFSPSALTL 155
            MSGDPIVLTAPPHSARMMGWSCWICIPKGLSRVPLLKGQEIIQ TI  PASFKLWKDEAFETWLTCTQKQTLPKTGFSILLFTCFHVLAIKPELVVQTEPSTDPYGPSIVDEALEAIVVSRETLPCGLSVNRKRAERGLSQLKVIRLFSPSALTL
Sbjct:    1 MSGDPIVLTAPPHSARMMGWSCWICIPKGLSRVPLLKGQEIIQPTIVDPASFKLWKDEAFETWLTCTQKQTLPKTGFSILLFTCFHVLAIKPELVVQTEPSTDPYGPSIVDEALEAIVVSRETLPCGLSVNRKRAERGLSQLKVIRLFSPSALTL 155
[Close]
BLAST of C09p74830.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF3606128.1 (hypothetical protein DY000_02051660 [Brassica cretica])

HSP 1 Score: 119 bits (298), Expect = 2.680e-30
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 0 
Query:   91 KPELVVQTEPSTDPYGPSIVDEALEAIVVSRETLPCGLSVNRKRAERGLSQLKVIRLFSPSALTL 155
             PELVVQTEPSTDPYGPSIVDEALEAIVV RETLPCGLSVNRKRAERGLSQLKVIRLF+PSALTL
Sbjct:  163 NPELVVQTEPSTDPYGPSIVDEALEAIVV-RETLPCGLSVNRKRAERGLSQLKVIRLFNPSALTL 226
[Close]
BLAST of C09p74830.1_BnaDARv10-RA vs. GenBank_protein
Match: VDC84814.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 103 bits (257), Expect = 1.320e-25
Identity = 51/69 (73.91%), Postives = 52/69 (75.36%), Query Frame = 0 
Query:    1 MSGDPIVLTAPPHSARMMGWSCWICIPKGLSRVPLLKGQEIIQLTIFG------PASFKLWKDEAFETW 63
            MSGDPIVLT  PHSARM GWSCWICIPKGLSRVPLLKGQ   Q  +F       PA FK WKDEAFETW
Sbjct:    1 MSGDPIVLTTSPHSARM-GWSCWICIPKGLSRVPLLKGQFSRQRELFNQPLLIDPARFKSWKDEAFETW 68
[Close]
BLAST of C09p74830.1_BnaDARv10-RA vs. GenBank_protein
Match: RID52757.1 (hypothetical protein BRARA_G00198 [Brassica rapa] >CDY46303.1 BnaA07g01980D [Brassica napus])

HSP 1 Score: 104 bits (260), Expect = 3.730e-25
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = 0 
Query:   86 HVLAIKPELVVQTEPSTDPYGPSIVDEALEAIVVSRETLPCGLSVNRKRAERGLSQLKV 144
            +V +IKPELVVQTEP TDPYGPSIVDEALEAIVVS+ETLP GLSVNRKRAERGLSQLK+
Sbjct:   78 YVKSIKPELVVQTEPITDPYGPSIVDEALEAIVVSKETLPGGLSVNRKRAERGLSQLKI 136
[Close]
BLAST of C09p74830.1_BnaDARv10-RA vs. GenBank_protein
Match: VDC95497.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 104 bits (260), Expect = 3.730e-25
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = 0 
Query:   86 HVLAIKPELVVQTEPSTDPYGPSIVDEALEAIVVSRETLPCGLSVNRKRAERGLSQLKV 144
            +V +IKPELVVQTEP TDPYGPSIVDEALEAIVVS+ETLP GLSVNRKRAERGLSQLK+
Sbjct:   78 YVKSIKPELVVQTEPITDPYGPSIVDEALEAIVVSKETLPGGLSVNRKRAERGLSQLKI 136
[Close]
BLAST of C09p74830.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_009102256.1 (phosphopantetheine adenylyltransferase isoform X1 [Brassica rapa])

HSP 1 Score: 104 bits (260), Expect = 3.730e-25
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = 0 
Query:   86 HVLAIKPELVVQTEPSTDPYGPSIVDEALEAIVVSRETLPCGLSVNRKRAERGLSQLKV 144
            +V +IKPELVVQTEP TDPYGPSIVDEALEAIVVS+ETLP GLSVNRKRAERGLSQLK+
Sbjct:   78 YVKSIKPELVVQTEPITDPYGPSIVDEALEAIVVSKETLPGGLSVNRKRAERGLSQLKI 136
[Close]
BLAST of C09p74830.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013652865.1 (phosphopantetheine adenylyltransferase-like [Brassica napus])

HSP 1 Score: 104 bits (260), Expect = 3.730e-25
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = 0 
Query:   86 HVLAIKPELVVQTEPSTDPYGPSIVDEALEAIVVSRETLPCGLSVNRKRAERGLSQLKV 144
            +V +IKPELVVQTEP TDPYGPSIVDEALEAIVVS+ETLP GLSVNRKRAERGLSQLK+
Sbjct:   78 YVKSIKPELVVQTEPITDPYGPSIVDEALEAIVVSKETLPGGLSVNRKRAERGLSQLKI 136
[Close]
BLAST of C09p74830.1_BnaDARv10-RA vs. GenBank_protein
Match: CAA7022147.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 104 bits (260), Expect = 7.540e-25
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = 0 
Query:   86 HVLAIKPELVVQTEPSTDPYGPSIVDEALEAIVVSRETLPCGLSVNRKRAERGLSQLKV 144
            +V +IKPELVVQTEP TDPYGPSIVDEALEAIVVS+ETLP GLSVNRKRAERGLSQLK+
Sbjct:  105 YVKSIKPELVVQTEPITDPYGPSIVDEALEAIVVSKETLPGGLSVNRKRAERGLSQLKI 163
[Close]
BLAST of C09p74830.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_018452214.1 (PREDICTED: phosphopantetheine adenylyltransferase-like [Raphanus sativus])

HSP 1 Score: 103 bits (257), Expect = 9.720e-25
Identity = 51/59 (86.44%), Postives = 56/59 (94.92%), Query Frame = 0 
Query:   86 HVLAIKPELVVQTEPSTDPYGPSIVDEALEAIVVSRETLPCGLSVNRKRAERGLSQLKV 144
            +V +IKPELVVQTEP TDPYGPSIVDE+LEAIVVS+ETLP GLSVNRKRAERGLSQLK+
Sbjct:   78 YVKSIKPELVVQTEPITDPYGPSIVDESLEAIVVSKETLPGGLSVNRKRAERGLSQLKI 136
[Close]
BLAST of C09p74830.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013595980.1 (PREDICTED: phosphopantetheine adenylyltransferase [Brassica oleracea var. oleracea])

HSP 1 Score: 103 bits (257), Expect = 1.050e-24
Identity = 51/59 (86.44%), Postives = 56/59 (94.92%), Query Frame = 0 
Query:   86 HVLAIKPELVVQTEPSTDPYGPSIVDEALEAIVVSRETLPCGLSVNRKRAERGLSQLKV 144
            +V +IKP+LVVQTEP TDPYGPSIVDEALEAIVVS+ETLP GLSVNRKRAERGLSQLK+
Sbjct:   78 YVKSIKPDLVVQTEPITDPYGPSIVDEALEAIVVSKETLPGGLSVNRKRAERGLSQLKI 136
The following BLAST results are available for this feature:
BLAST of C09p74830.1_BnaDARv10-RA vs. GenBank_protein
Analysis Date: 2021-04-17 (Diamond on Darmor-bzh OGS10 v10 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
CDY69976.11.190e-10798.06BnaUnng03560D [Brassica napus][more]
KAF3606128.12.680e-3095.38hypothetical protein DY000_02051660 [Brassica cret... [more]
VDC84814.11.320e-2573.91unnamed protein product [Brassica oleracea][more]
RID52757.13.730e-2588.14hypothetical protein BRARA_G00198 [Brassica rapa] ... [more]
VDC95497.13.730e-2588.14unnamed protein product [Brassica rapa][more]
XP_009102256.13.730e-2588.14phosphopantetheine adenylyltransferase isoform X1 ... [more]
XP_013652865.13.730e-2588.14phosphopantetheine adenylyltransferase-like [Brass... [more]
CAA7022147.17.540e-2588.14unnamed protein product [Microthlaspi erraticum][more]
XP_018452214.19.720e-2586.44PREDICTED: phosphopantetheine adenylyltransferase-... [more]
XP_013595980.11.050e-2486.44PREDICTED: phosphopantetheine adenylyltransferase ... [more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006629 lipid metabolic process
biological_process GO:0019915 lipid storage
biological_process GO:0016310 phosphorylation
biological_process GO:0080020 regulation of coenzyme A biosynthetic process
biological_process GO:0009651 response to salt stress
cellular_component GO:0005829 cytosol
molecular_function GO:0005524 ATP binding
molecular_function GO:0004140 dephospho-CoA kinase activity
molecular_function GO:0004595 pantetheine-phosphate adenylyltransferase activity
InterPro
Analysis Name: InterProScan on Darmor-bzh OGS10 v10
Date Performed: 2021-04-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014729Rossmann-like alpha/beta/alpha sandwich foldGENE3D3.40.50.620HUPscoord: 83..150
e-value: 3.3E-10
score: 42.3
NoneNo IPR availablePANTHERPTHR10695DEPHOSPHO-COA KINASE-RELATEDcoord: 1..152
NoneNo IPR availablePANTHERPTHR10695:SF51BNAUNNG03560D PROTEINcoord: 1..152

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C09_BnaDARv10contigC09_BnaDARv10:65412246..65413116 -    View in Apollo
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on Darmor-bzh OGS10 v102021-04-17
Diamond on Darmor-bzh OGS10 v10 vs NR2021-04-17
Blast2GO on Darmor-bzh OGS10 v102021-04-17
Darmor-bzh OGS10 v102020-07-22
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
C09p74830.1_BnaDARv10-RAC09p74830.1_BnaDARv10-RABrassica napusmRNAC09_BnaDARv10 65412246..65413116 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>C09p74830.1_BnaDARv10-PA ID=C09p74830.1_BnaDARv10-PA|Name=C09p74830.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=156bp
MSGDPIVLTAPPHSARMMGWSCWICIPKGLSRVPLLKGQEIIQLTIFGPA
SFKLWKDEAFETWLTCTQKQTLPKTGFSILLFTCFHVLAIKPELVVQTEP
STDPYGPSIVDEALEAIVVSRETLPCGLSVNRKRAERGLSQLKVIRLFSP
SALTL.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014729Rossmann-like_a/b/a_fold
Vocabulary: Biological Process
TermDefinition
GO:0016310phosphorylation
GO:0006629lipid metabolic process
GO:0009651response to salt stress
GO:0080020regulation of coenzyme A biosynthetic process
GO:0019915lipid storage
Vocabulary: Molecular Function
TermDefinition
GO:0004595pantetheine-phosphate adenylyltransferase activity
GO:0004140dephospho-CoA kinase activity
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol