C09p74090.1_BnaDARv10-PA (polypeptide) Brassica napus

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameC09p74090.1_BnaDARv10-RA
Unique NameC09p74090.1_BnaDARv10-PA
Typepolypeptide
OrganismBrassica napus (cv. Darmor-bzh, rapeseed)
Sequence length61
Homology
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BLAST of C09p74090.1_BnaDARv10-RA vs. GenBank_protein
Match: CDY10444.1 (BnaCnng03450D [Brassica napus] >VDD34817.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 123 bits (309), Expect = 8.260e-35
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 
Query:    1 MKKKKPAHQNHHCSYLKEEETQFPLRSRSKLLEKDASVQGNECVKYIAAITNLIQDNQDR 60
            MKKKKPAHQNHHCSYLKEEETQFPLRSRSKLLEKDASVQGNECVKYIAAITNLIQDNQDR
Sbjct:    1 MKKKKPAHQNHHCSYLKEEETQFPLRSRSKLLEKDASVQGNECVKYIAAITNLIQDNQDR 60
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BLAST of C09p74090.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF2537374.1 (hypothetical protein F2Q68_00023538 [Brassica cretica] >KAF2575100.1 hypothetical protein F2Q70_00006867 [Brassica cretica] >KAF3568192.1 hypothetical protein DY000_02019941 [Brassica cretica])

HSP 1 Score: 122 bits (306), Expect = 1.070e-33
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0 
Query:    1 MKKKKPAHQNHHCSYLKEEETQFPLRSRSKLLEKDASVQGNECVKYIAAITNLIQDNQDR 60
            MKKKKPAHQNHHCSYLKEEETQFPLRSRSKLLEKDAS+QGNECVKYIAAITNLIQDNQDR
Sbjct:    1 MKKKKPAHQNHHCSYLKEEETQFPLRSRSKLLEKDASLQGNECVKYIAAITNLIQDNQDR 60
The following BLAST results are available for this feature:
BLAST of C09p74090.1_BnaDARv10-RA vs. GenBank_protein
Analysis Date: 2021-04-17 (Diamond on Darmor-bzh OGS10 v10 vs NR)
Total hits: 2
Match NameE-valueIdentityDescription
CDY10444.18.260e-35100.00BnaCnng03450D [Brassica napus] >VDD34817.1 unnamed... [more]
KAF2537374.11.070e-3398.33hypothetical protein F2Q68_00023538 [Brassica cret... [more]
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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0016021 integral component of membrane
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C09_BnaDARv10contigC09_BnaDARv10:64889004..64889186 +    View in Apollo
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on Darmor-bzh OGS10 v102021-04-17
Diamond on Darmor-bzh OGS10 v10 vs NR2021-04-17
Blast2GO on Darmor-bzh OGS10 v102021-04-17
Darmor-bzh OGS10 v102020-07-22
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
C09p74090.1_BnaDARv10-RAC09p74090.1_BnaDARv10-RABrassica napusmRNAC09_BnaDARv10 64889004..64889186 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>C09p74090.1_BnaDARv10-PA ID=C09p74090.1_BnaDARv10-PA|Name=C09p74090.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=61bp
MKKKKPAHQNHHCSYLKEEETQFPLRSRSKLLEKDASVQGNECVKYIAAI
TNLIQDNQDR.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0005789endoplasmic reticulum membrane