C09p66310.1_BnaDARv10-PA (polypeptide) Brassica napus

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameC09p66310.1_BnaDARv10-RA
Unique NameC09p66310.1_BnaDARv10-PA
Typepolypeptide
OrganismBrassica napus (cv. Darmor-bzh, rapeseed)
Sequence length457
Homology
BLAST of C09p66310.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD52817.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 742 bits (1916), Expect = 1.470e-267
Identity = 443/455 (97.36%), Postives = 447/455 (98.24%), Query Frame = 0
Query:    1 MAPIVMVSRLSSLRPSSPPLRPRXXXXXXXXXXYPVPIEALSPQPCSSSLAQALTXXXXXXXXXXXXXXXXXXXXSRTEPPDPPDASFRLVVHLHFDTPFTLSQAYIQNLETRFPNLASGGVVSFVFFGATRSGSKGLYPNLVVRVCGIITVLRPFIPSPQALTHILTLKPPSRMATKKSGGGGLPVSASDTSFAYGLLSPVLYRYLFGCVDXXXXXXXXXXXXXXXXXXXXXDLPTSGPCKVLHAHISSLFTTYSATVEWFRQLSVWVMLELRFMILAGDIPMGLVSFGSTFVTFSSIYIALARASADADSLMGFIPDVGVVFVYLSSWWRVEEKFIVIFIPMNMDVAGFNFPLVPRLNQSFFLIFLLIWSKLDEQVSLVLQRFSSHRMLFSAYGAVCVVLRVTLDAVFKEAYDVVVVRFHMATSCDLYRHSIPYVVVVVCLAVNSLFVSSFVG 455
            MAPIVMVSRLSSLRPSSPPLRPRXXXXXXXXXX PVPIEALSPQPCSSSLAQALTXXXXXXXXXXXXXXXXXXXXS+TEPPDPPDASFRLVVHLHFDTPFTLSQAYIQNLETRFPNLASGGVVSFVFFGATRSGSKGLYPNLVVRVCGIITVLRPFIPSPQALTHILTLKPPSRMATKKSGGGGLPVSASDTSFAYGLLSPVLYRYLFGCVDXXXXXXXXXXXXXXXXXXXXXDLPTSGPCKVLHAHISSLFTTYSATVEWFRQLSVWVMLELRFMILAGDIPMGLVSFGSTFVTFSSIYIALAR SA   SLMGFIPDVGVVFVYLSSWW+VEEKFIVIFIPMNMDVAGFNFPLVPRLNQSFFLIFLL+WSKLDEQ SLVLQRFSSHRMLFSAYGAVCVVLRVTLDAVFKEA+DVVVVRFHMATSCDLYRHSIPYVVVV CLAVNSLFV SFVG
Sbjct:    1 MAPIVMVSRLSSLRPSSPPLRPRXXXXXXXXXXSPVPIEALSPQPCSSSLAQALTXXXXXXXXXXXXXXXXXXXXSQTEPPDPPDASFRLVVHLHFDTPFTLSQAYIQNLETRFPNLASGGVVSFVFFGATRSGSKGLYPNLVVRVCGIITVLRPFIPSPQALTHILTLKPPSRMATKKSGGGGLPVSASDTSFAYGLLSPVLYRYLFGCVDXXXXXXXXXXXXXXXXXXXXXDLPTSGPCKVLHAHISSLFTTYSATVEWFRQLSVWVMLELRFMILAGDIPMGLVSFGSTFVTFSSIYIALARPSAVCSSLMGFIPDVGVVFVYLSSWWQVEEKFIVIFIPMNMDVAGFNFPLVPRLNQSFFLIFLLLWSKLDEQDSLVLQRFSSHRMLFSAYGAVCVVLRVTLDAVFKEAHDVVVVRFHMATSCDLYRHSIPYVVVV-CLAVNSLFVFSFVG 454          
BLAST of C09p66310.1_BnaDARv10-RA vs. GenBank_protein
Match: CDY15575.1 (BnaA08g28590D [Brassica napus])

HSP 1 Score: 689 bits (1778), Expect = 1.670e-246
Identity = 423/458 (92.36%), Postives = 429/458 (93.67%), Query Frame = 0
Query:    1 MAPIVMVSRLSSLRPSSPPLRPRXXXXXXXXXXYPVPIEALSPQPCSSSLAQALTXXXXXXXXXXXXXXXXXXXXSRTEPPDPPDASFRLVVHLHFDTPFTLSQAYIQNLETRFPNLASGGVVSFVFFGATRSGSKGLYPNLVVRVCGIITVLRPFIPSPQALTHILTLKPPSRMATKKSGGGGLPVSASDTSFAYGLLSPVLYRYLFGCVDXXXXXXXXXXXXXXXXXXXXXDLPTSGPCKVLHAHISSLFTTYSATVEWFRQLSVWVMLELRFMILAGDIPMGLVSFGSTFVTFSSIYIALARASADADSLMGFIPDVGVVFVYLSSW--WRVEEKFIVIFIPMNMDVAGFNFPLVPRLNQSFFLIFLLIWSKLDEQVSLVLQRFSSHRMLFSAYGAVCVVLRVTLDAVFKEAYDVVVVRFHMATSCDLYRHSIPYVVVVVCLAVNSLFVSSFVGV 456
            MAP+VMV RLSSLRPSSPPLRP XXXXXXXXXX PVPIEALSPQPCSSSLAQALTXXXXXXXXXXXXXXXXXXXXSR EP    DASFRLVVHLHF+TPFTLSQAYIQNLETRFPNLASGGVVSFVFFGATR GSK LYPNL+VRVCGIITVLRPFIPS Q LTHILTLKPPSRMATKKSGGGGLPVSASDTSFAYGLLSPV+YRYLFGCVDXXXXXXXXXXXXXXXXXXXX DL TS PCKVLHAH SSLFT YSATV+WFRQLSVWVMLELRFMILAGDIPMGLVSFGSTFVTFSSIYIALARASA   SLMGFIPDVGVVFVYLSSW  W+VEEKFIVIFIPMNMDVAGFNFPLVPRLNQSFFLIFL IWSKLDEQVSLVLQ  SSHRMLFSAYGAVCVVLRVTLDAVFKEAYDVVVVRFHMA SCDL RHSIPYVVVVVCLAVNS FV SFVGV
Sbjct:    1 MAPMVMVPRLSSLRPSSPPLRPXXXXXXXXXXXXPVPIEALSPQPCSSSLAQALTXXXXXXXXXXXXXXXXXXXXSRPEPXXXXDASFRLVVHLHFNTPFTLSQAYIQNLETRFPNLASGGVVSFVFFGATRFGSKSLYPNLLVRVCGIITVLRPFIPSLQVLTHILTLKPPSRMATKKSGGGGLPVSASDTSFAYGLLSPVVYRYLFGCVDXXXXXXXXXXXXXXXXXXXXFDLHTSRPCKVLHAHHSSLFTIYSATVKWFRQLSVWVMLELRFMILAGDIPMGLVSFGSTFVTFSSIYIALARASAVCSSLMGFIPDVGVVFVYLSSWCWWQVEEKFIVIFIPMNMDVAGFNFPLVPRLNQSFFLIFLPIWSKLDEQVSLVLQGSSSHRMLFSAYGAVCVVLRVTLDAVFKEAYDVVVVRFHMAPSCDLCRHSIPYVVVVVCLAVNSPFVLSFVGV 458          
BLAST of C09p66310.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013640688.1 (uncharacterized protein LOC106345996 [Brassica napus])

HSP 1 Score: 489 bits (1259), Expect = 2.290e-170
Identity = 276/282 (97.87%), Postives = 277/282 (98.23%), Query Frame = 0
Query:  175 MATKKSGGGGLPVSASDTSFAYGLLSPVLYRYLFGCVDXXXXXXXXXXXXXXXXXXXXXDLPTSGPCKVLHAHISSLFTTYSATVEWFRQLSVWVMLELRFMILAGDIPMGLVSFGSTFVTFSSIYIALARASADADSLMGFIPDVGVVFVYLSSWWRVEEKFIVIFIPMNMDVAGFNFPLVPRLNQSFFLIFLLIWSKLDEQVSLVLQRFSSHRMLFSAYGAVCVVLRVTLDAVFKEAYDVVVVRFHMATSCDLYRHSIPYVVVVVCLAVNSLFVSSFVGV 456
            MATKKSGGGGLPVSASDTSFAYGLLSPVLY YLFGCVDXXXXXXXXXXXXXXXXXXXXXDLPTSGPCKVLHAHISSLFTTYSATVEWFRQLSVWVMLELRFMILAGDIPMGLVSFGSTFVTFSSIYIALARASA   SLMGFIPDVGVVFVYLSSWW+VEEKFIVIFIPMNMDVAGFNFPLVPRLNQSFFLIFLLIWSKLDEQVSLVLQRFSSHRMLFSAYGAVCVVLRVTLDAVFKEAYDVVVVRFHMA SCDLYRHSIPYVVVVVCLAVNSLFVSSFVGV
Sbjct:    1 MATKKSGGGGLPVSASDTSFAYGLLSPVLYMYLFGCVDXXXXXXXXXXXXXXXXXXXXXDLPTSGPCKVLHAHISSLFTTYSATVEWFRQLSVWVMLELRFMILAGDIPMGLVSFGSTFVTFSSIYIALARASAVCSSLMGFIPDVGVVFVYLSSWWQVEEKFIVIFIPMNMDVAGFNFPLVPRLNQSFFLIFLLIWSKLDEQVSLVLQRFSSHRMLFSAYGAVCVVLRVTLDAVFKEAYDVVVVRFHMAPSCDLYRHSIPYVVVVVCLAVNSLFVSSFVGV 282          
BLAST of C09p66310.1_BnaDARv10-RA vs. GenBank_protein
Match: CDY36188.1 (BnaC04g37060D [Brassica napus])

HSP 1 Score: 473 bits (1217), Expect = 6.870e-163
Identity = 302/308 (98.05%), Postives = 302/308 (98.05%), Query Frame = 0
Query:    1 MAPIVMVSRLSSLRPSSPPLRPRXXXXXXXXXXYPVPIEALSPQPCSSSLAQALTXXXXXXXXXXXXXXXXXXXXSRTEPPDPPDASFRLVVHLHFDTPFTLSQAYIQNLETRFPNLASGGVVSFVFFGATRSGSKGLYPNLVVRVCGIITVLRPFIPSPQALTHILTLKPPSRMATKKSGGGGLPVSASDTSFAYGLLSPVLYRYLFGCVDXXXXXXXXXXXXXXXXXXXXXDLPTSGPCKVLHAHISSLFTTYSATVEWFRQLSVWVMLELRFMILAGDIPMGLVSFGSTFVTFSSIYIALARASA 308
            MA IVMVSRLSSLRPSSPPLRPRXXXXXXXXXX PVP EALSPQPCSSSLAQALTXXXXXXXXXXXXXXXXXXXXSRTEPPDPPDASFRLVVHLHFDTPFTLSQAYIQNLETRFPNLASGGVVSFVFFGATR GSKGLYPNLVVRVCGIITVLRPFIPSPQALTHILTLKPPSRMATKKSGGGGLPVSASDTSFAYGLLSPVLYRYLFGCVDXXXXXXXXXXXXXXXXXXXX DLPTSGPCKVLHAHIS LFTTYSATVEWFRQLSVWVMLELRFMILAGDIPMGLVSFGSTFVTFSSIYIALARASA
Sbjct:    1 MALIVMVSRLSSLRPSSPPLRPRXXXXXXXXXXSPVPFEALSPQPCSSSLAQALTXXXXXXXXXXXXXXXXXXXXSRTEPPDPPDASFRLVVHLHFDTPFTLSQAYIQNLETRFPNLASGGVVSFVFFGATRFGSKGLYPNLVVRVCGIITVLRPFIPSPQALTHILTLKPPSRMATKKSGGGGLPVSASDTSFAYGLLSPVLYRYLFGCVDXXXXXXXXXXXXXXXXXXXXFDLPTSGPCKVLHAHISYLFTTYSATVEWFRQLSVWVMLELRFMILAGDIPMGLVSFGSTFVTFSSIYIALARASA 308          
BLAST of C09p66310.1_BnaDARv10-RA vs. GenBank_protein
Match: RID67136.1 (hypothetical protein BRARA_D02235 [Brassica rapa])

HSP 1 Score: 448 bits (1153), Expect = 3.130e-154
Identity = 260/284 (91.55%), Postives = 265/284 (93.31%), Query Frame = 0
Query:  175 MATKKSGGG--GLPVSASDTSFAYGLLSPVLYRYLFGCVDXXXXXXXXXXXXXXXXXXXXXDLPTSGPCKVLHAHISSLFTTYSATVEWFRQLSVWVMLELRFMILAGDIPMGLVSFGSTFVTFSSIYIALARASADADSLMGFIPDVGVVFVYLSSWWRVEEKFIVIFIPMNMDVAGFNFPLVPRLNQSFFLIFLLIWSKLDEQVSLVLQRFSSHRMLFSAYGAVCVVLRVTLDAVFKEAYDVVVVRFHMATSCDLYRHSIPYVVVVVCLAVNSLFVSSFVGV 456
            MATKKSGG   GLPVSASDTSFAYGLLSPV+YRYLFGCV XXXXXXXXXXXXXXXXXXXX DL TS  CKVLHAH+SSLFTTYSATVEWFRQLSVWVMLELRFMILAGDIPMGLVSFGSTFVTFSSIYIALARASA   SLMGFIPDVGVVFVYLSSWW+VEEK IVIFIPMNMDVAGFNFPLVPRLNQSFFLIFL IWSKLDEQVSLVLQ   SHRM+FSAYGAVCV+LRVTLDAVFKEAYDVVVVRFHMA SCDLYRH I YVVVVVCLAVNSLFVSSFVGV
Sbjct:    1 MATKKSGGXXXGLPVSASDTSFAYGLLSPVVYRYLFGCVYXXXXXXXXXXXXXXXXXXXXFDLHTSRRCKVLHAHLSSLFTTYSATVEWFRQLSVWVMLELRFMILAGDIPMGLVSFGSTFVTFSSIYIALARASAVCSSLMGFIPDVGVVFVYLSSWWQVEEKLIVIFIPMNMDVAGFNFPLVPRLNQSFFLIFLPIWSKLDEQVSLVLQGSCSHRMIFSAYGAVCVILRVTLDAVFKEAYDVVVVRFHMAPSCDLYRHYILYVVVVVCLAVNSLFVSSFVGV 284          
BLAST of C09p66310.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013607628.1 (PREDICTED: uncharacterized protein LOC106314273 [Brassica oleracea var. oleracea])

HSP 1 Score: 401 bits (1030), Expect = 8.430e-136
Identity = 220/283 (77.74%), Postives = 231/283 (81.63%), Query Frame = 0
Query:  175 MATKKSGGGGLPVSASDTSFAYGLLSPVLYRYLFGCVDXXXXXXXXXXXXXXXXXXXXXDLPTSGPCKVLHAHISSLFTTYSATVEWFRQLSVWVMLELRFMILAGDIPMGLVSFGSTFVTFSSIYIALARASADADSLMGFIPDVGVVFVYLSSWWRVEEKFIVIFIPMNMDVAGFNFPLVPRLNQSFFLIFLLIWSKLDEQVSLVLQRFSSHRMLFSAYGAVCVVLRVTLDAVFKEAYDVVVVRFHMATSCDLYRHSIPYVVVVV-CLAVNSLFVSSFVGV 456
            MATK  GGGGL VSASDTSFAYGL  PV+YR LFGC+D                     DLPTS P K+LHAH+SSLF +YSATVEWF QL VW M ELRFMIL+GDIPMGLVSFGSTFVT SSIYIALARASA   SL GFIPDVGV  VYLSSWW+VEEK IVIFIPMNMDV+GF+FPLVPRLNQ  FLIFL IWS+LDEQVSLVLQ  SSHRMLFSAYGAVCVVLRVTLD VFKEAYDVVVVRFHMA SCDLYRH IPYVVVVV CLAVNS+FV SFVGV
Sbjct:    1 MATKNGGGGGLSVSASDTSFAYGLHYPVIYRSLFGCIDWPSISSCF-------------DLPTSRPGKILHAHLSSLFPSYSATVEWFIQLFVWAMWELRFMILSGDIPMGLVSFGSTFVTSSSIYIALARASAICSSLTGFIPDVGVS-VYLSSWWQVEEKLIVIFIPMNMDVSGFDFPLVPRLNQYSFLIFLPIWSELDEQVSLVLQGSSSHRMLFSAYGAVCVVLRVTLDVVFKEAYDVVVVRFHMAPSCDLYRHYIPYVVVVVVCLAVNSVFVYSFVGV 269          
BLAST of C09p66310.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF3500535.1 (hypothetical protein F2Q69_00040707 [Brassica cretica])

HSP 1 Score: 400 bits (1029), Expect = 1.200e-135
Identity = 221/283 (78.09%), Postives = 231/283 (81.63%), Query Frame = 0
Query:  175 MATKKSGGGGLPVSASDTSFAYGLLSPVLYRYLFGCVDXXXXXXXXXXXXXXXXXXXXXDLPTSGPCKVLHAHISSLFTTYSATVEWFRQLSVWVMLELRFMILAGDIPMGLVSFGSTFVTFSSIYIALARASADADSLMGFIPDVGVVFVYLSSWWRVEEKFIVIFIPMNMDVAGFNFPLVPRLNQSFFLIFLLIWSKLDEQVSLVLQRFSSHRMLFSAYGAVCVVLRVTLDAVFKEAYDVVVVRFHMATSCDLYRHSIPYVVVVV-CLAVNSLFVSSFVGV 456
            MATK  GGGGL VSASDTSFAYGL  PV+YR LFGCVD                     DLPTS P K+LHAH+SSLF +YSATVEWF QL VW M ELRFMIL+GDIPMGLVSFGSTFVT SSIYIALARASA   SL GFIPDV  V VYLSSWW+VEEK IVIFIPMNMDV+GF+FPLVPRLNQS FLIFL IWS+LDEQVSLVLQ  SSHRMLFSAYGAVCVVLRVTLD VFKEAYDVVVVRFHMA SCDLYRH IPYVVVVV CLAVNS+FV SFVGV
Sbjct:    1 MATKNGGGGGLSVSASDTSFAYGLHYPVIYRSLFGCVDWPSISSCF-------------DLPTSRPGKILHAHLSSLFPSYSATVEWFIQLFVWAMWELRFMILSGDIPMGLVSFGSTFVTSSSIYIALARASAICSSLTGFIPDV-CVSVYLSSWWQVEEKLIVIFIPMNMDVSGFDFPLVPRLNQSSFLIFLPIWSELDEQVSLVLQGSSSHRMLFSAYGAVCVVLRVTLDVVFKEAYDVVVVRFHMAPSCDLYRHYIPYVVVVVVCLAVNSVFVYSFVGV 269          
BLAST of C09p66310.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF3547493.1 (hypothetical protein DY000_02009586 [Brassica cretica])

HSP 1 Score: 379 bits (973), Expect = 5.600e-125
Identity = 232/318 (72.96%), Postives = 256/318 (80.50%), Query Frame = 0
Query:  148 GIITVLRPFIPSPQALTHILTLKPPSRMATKKSGGGGLPVSASDTSFAYGLLSPVLYRYLFGCVDXXXXXXXXXXXXXXXXXXXXX---------DLPTSGPCKVLHAHISSLFTTYSATVEWFRQLSVWVMLELRFMILAGDIPMGLVSFGSTFVTFSSIYIALARASADADSLMGFIPDVGVVFVYLSSWWRVEEKFIVIFIPMNMDVAGFNFPLVPRLNQSFFLIFLLIWSKLDEQVSLVLQRFSSHRMLFSAYGAVCVVLRVTLDAVFKEAYDVVVVRFHMATSCDLYRHSIPYVVVVVCLAVNSLFVSSFVGV 456
            G++TVL PFIPSPQA   I TLKPPSRMATK  G GGL         AYGL S V+Y   FGCVD    XXXXXXXXXXXXXXXXX         DLPT+  CKVLHAH+S +F+TY+ TVEWFRQL VW+MLELRFMILAGD PMGLVSFGSTFVT SSIYIALAR+SA   SL G I DVGVVFVYL SWW+VEEK IV FIPMNM+VAG++ PLVPRL+QS+FLIF  +WS+LDEQ SLVLQ  SS RMLFSAYGAVCVVLRVTLD+VF+EAYDVVV+RFH+A+  DLYR SI Y+VVVVCLAVNSLFVSSFVGV
Sbjct:  108 GVVTVLLPFIPSPQARIQISTLKPPSRMATKNVGSGGL--------LAYGLHSFVVYMSPFGCVDYTSFXXXXXXXXXXXXXXXXXXXXXISSCFDLPTTPHCKVLHAHLSYVFSTYTTTVEWFRQLFVWLMLELRFMILAGDRPMGLVSFGSTFVTSSSIYIALARSSAVCSSLTGSISDVGVVFVYLCSWWQVEEKPIVTFIPMNMEVAGYS-PLVPRLSQSYFLIFPPLWSELDEQASLVLQGSSSLRMLFSAYGAVCVVLRVTLDSVFEEAYDVVVIRFHLASFWDLYRLSILYLVVVVCLAVNSLFVSSFVGV 416          
BLAST of C09p66310.1_BnaDARv10-RA vs. GenBank_protein
Match: CDY15492.1 (BnaA08g27760D [Brassica napus])

HSP 1 Score: 355 bits (910), Expect = 6.520e-116
Identity = 216/384 (56.25%), Postives = 242/384 (63.02%), Query Frame = 0
Query:   80 PPDPPDASFRLVVHLHFDTP-----------FTLSQAYIQNLETRFPNLASGGVVSFVFFGATRSGSKGLYPNLVVRVCGIITVLRPFIPSPQALTHILTLKPPSRMATKKSGGGGLPVSASDTSFAYGLLSPVLYRYLFGCVDXXXXXXXXXXXXXXXXXXXXXDLPTSGPCKVLHAHISSLFTTYSATVEWFRQLSVWVMLELRFMILAGDIPMGLVSFGSTFVTFSSIYIALARASADADSLMGFIPDVGVVFVYLSSWWRVEEKFIVIFIPMNMDVAGFNFPLVPRLNQSFFLIFLLIWSKLDEQVSLVLQRFSSHRMLFSAYGAVCVVLRVTLDAVFKEAYDVVVVRFHMATSCDLYRHSIPYVVVVVCLAVNSLFVSS 452
            PPDPP   F  +  L   TP                 Y+    + FP LA        F   T        P L++ V  ++      IPS QA T I TLKPPSRMATK  GGGG PVSASDTS  YG LSPV+YR++FGCVD                     DL T+  CKV   H+SS    YSA +E+ RQL  WV LELRF  L GDIPM +VS GSTF T  SIYIALAR+SA   S  G + DVGV  VYLSS W+VEEKFIV+F P N+DVAG+ FPLVP+LNQS FLIF  IWS+LDE VSLVLQ  SSHRML SAYGAVCVVLRVTLDA+FKEAYD VV+RFHM    DLYRH IPYV+VVVCLAVNSLFVSS
Sbjct:   15 PPDPPPCKFLPLASLSLVTPPEXXXXXXXXXXXXLLRYLNTSFSLFP-LAMTQNQDLDFPSLTPESRGCDVPFLLLGVSSVVFGCIFSIPSTQAFTQISTLKPPSRMATKNGGGGGSPVSASDTSLTYGFLSPVIYRFVFGCVDWLSISSCF-------------DLSTTLSCKVFQGHLSSF---YSANLEYSRQLFGWVTLELRFRTLVGDIPMDVVSLGSTFTTSRSIYIALARSSAVCSSCTGSMTDVGVGLVYLSSLWQVEEKFIVLFKPWNVDVAGYGFPLVPQLNQSSFLIFPPIWSELDEHVSLVLQGSSSHRML-SAYGAVCVVLRVTLDAIFKEAYDFVVIRFHMILFYDLYRHFIPYVIVVVCLAVNSLFVSS 380          
BLAST of C09p66310.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF2577137.1 (hypothetical protein F2Q68_00001278 [Brassica cretica])

HSP 1 Score: 356 bits (914), Expect = 9.080e-116
Identity = 198/300 (66.00%), Postives = 222/300 (74.00%), Query Frame = 0
Query:  158 PSPQALTHILTLKPPSRMATKKSGGGGLPVSASDTSFAYGLLSPVLYRYLFGCVDXXXXXXXXXXXXXXXXXXXXXDLPTSGPCKVLHAHISSLFTTYSATVEWFRQLSVWVMLELRFMILAGDIPMGLVSFGSTFVTFSSIYIALARASADADSLMGFIPDVGVVFVYLSSWWRVEEKFIVIFIPMNMDVAGFNFPLVPRLNQSFFLIFLLIWSKLDEQVSLVLQRFSSHRMLFSAYGAVCVVLRVTLDAVFKEAYDVVVVRFHMATSCDLYRHSIPYVVV-VVCLAVNSLFVSSFVGV 456
            PS QAL  I T+K P R+ATK  GGGG+ V ASD+  AYGLLSPV+YR +FGC+D                     DLP + PCKV H H+SS F+TY ATVEW RQL VWV LELRFM L GDIPM LV FG T  T +SI+IALAR+SA   SL G IP VGV+FVYLSSWW+VEEK I I   MNMDVAG++F LVPRLNQS FLI   IWS+L+EQ SLVLQ  SSHRMLFSAYGAVCVVLRVTLDA+F+ AYDVVV+R HM + CDL RHSI YV V VVCLAVNSLFVSSF+GV
Sbjct:  152 PSLQALFQISTVKLPCRIATKSGGGGGVHVFASDSLLAYGLLSPVVYRSIFGCIDWSLFSSCF-------------DLPITPPCKVSHVHLSSFFSTYFATVEWIRQLFVWVTLELRFMTLVGDIPMVLVLFGPTLATSNSIFIALARSSAVCSSLTGSIPGVGVMFVYLSSWWQVEEKLIFISSLMNMDVAGYDFSLVPRLNQSSFLILPPIWSELEEQASLVLQGSSSHRMLFSAYGAVCVVLRVTLDAIFEVAYDVVVIRSHMFSFCDLCRHSIFYVFVGVVCLAVNSLFVSSFIGV 438          
The following BLAST results are available for this feature:
BLAST of C09p66310.1_BnaDARv10-RA vs. GenBank_protein
Analysis Date: 2021-04-17 (Diamond on Darmor-bzh OGS10 v10 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
VDD52817.11.470e-26797.36unnamed protein product [Brassica oleracea][more]
CDY15575.11.670e-24692.36BnaA08g28590D [Brassica napus][more]
XP_013640688.12.290e-17097.87uncharacterized protein LOC106345996 [Brassica nap... [more]
CDY36188.16.870e-16398.05BnaC04g37060D [Brassica napus][more]
RID67136.13.130e-15491.55hypothetical protein BRARA_D02235 [Brassica rapa][more]
XP_013607628.18.430e-13677.74PREDICTED: uncharacterized protein LOC106314273 [B... [more]
KAF3500535.11.200e-13578.09hypothetical protein F2Q69_00040707 [Brassica cret... [more]
KAF3547493.15.600e-12572.96hypothetical protein DY000_02009586 [Brassica cret... [more]
CDY15492.16.520e-11656.25BnaA08g27760D [Brassica napus][more]
KAF2577137.19.080e-11666.00hypothetical protein F2Q68_00001278 [Brassica cret... [more]

Pages

back to top
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterProScan on Darmor-bzh OGS10 v10
Date Performed: 2021-04-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..36
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 313..331
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 282..301
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..281
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 415..433
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 351..371
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 434..454
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 302..312
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 332..350
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 455..456
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 392..414
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 372..391
NoneNo IPR availableSIGNALP_GRAM_POSITIVESignalP-TMSignalP-TMcoord: 1..12
score: 0.454
NoneNo IPR availableTMHMMTMhelixcoord: 348..370
NoneNo IPR availableTMHMMTMhelixcoord: 391..410
NoneNo IPR availableTMHMMTMhelixcoord: 433..455
NoneNo IPR availableTMHMMTMhelixcoord: 282..304
NoneNo IPR availableTMHMMTMhelixcoord: 311..333

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C09_BnaDARv10contigC09_BnaDARv10:60894038..60895408 -    View in Apollo
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on Darmor-bzh OGS10 v102021-04-17
Diamond on Darmor-bzh OGS10 v10 vs NR2021-04-17
Blast2GO on Darmor-bzh OGS10 v102021-04-17
Darmor-bzh OGS10 v102020-07-22
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
C09p66310.1_BnaDARv10-RAC09p66310.1_BnaDARv10-RABrassica napusmRNAC09_BnaDARv10 60894038..60895408 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>C09p66310.1_BnaDARv10-PA ID=C09p66310.1_BnaDARv10-PA|Name=C09p66310.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=457bp
MAPIVMVSRLSSLRPSSPPLRPRPPPDPPPSLPYPVPIEALSPQPCSSSL
AQALTPHEPPDLPPCLFSPVLFEALSRTEPPDPPDASFRLVVHLHFDTPF
TLSQAYIQNLETRFPNLASGGVVSFVFFGATRSGSKGLYPNLVVRVCGII
TVLRPFIPSPQALTHILTLKPPSRMATKKSGGGGLPVSASDTSFAYGLLS
PVLYRYLFGCVDDTSFAYGLHYPVIYRSLFGCFDLPTSGPCKVLHAHISS
LFTTYSATVEWFRQLSVWVMLELRFMILAGDIPMGLVSFGSTFVTFSSIY
IALARASADADSLMGFIPDVGVVFVYLSSWWRVEEKFIVIFIPMNMDVAG
FNFPLVPRLNQSFFLIFLLIWSKLDEQVSLVLQRFSSHRMLFSAYGAVCV
VLRVTLDAVFKEAYDVVVVRFHMATSCDLYRHSIPYVVVVVCLAVNSLFV
SSFVGV.
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane