C09p66190.1_BnaDARv10-PA (polypeptide) Brassica napus

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameC09p66190.1_BnaDARv10-RA
Unique NameC09p66190.1_BnaDARv10-PA
Typepolypeptide
OrganismBrassica napus (cv. Darmor-bzh, rapeseed)
Sequence length112
Homology
[Close]
BLAST of C09p66190.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013708956.1 (flowering-promoting factor 1-like protein 2 [Brassica napus])

HSP 1 Score: 228 bits (581), Expect = 1.600e-75
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 
Query:    1 MSGVWVFKNGVIRLVENPYQSGGVTHGRRNVLVYLPTGEVISSYSSLEQILMSLGWERYFSGDSDLIQYHKRYSIDLISLPRDFSKFNSVYMYDIVIKNPNTFHVHVRDFH 111
            MSGVWVFKNGVIRLVENPYQSGGVTHGRRNVLVYLPTGEVISSYSSLEQILMSLGWERYFSGDSDLIQYHKRYSIDLISLPRDFSKFNSVYMYDIVIKNPNTFHVHVRDFH
Sbjct:    1 MSGVWVFKNGVIRLVENPYQSGGVTHGRRNVLVYLPTGEVISSYSSLEQILMSLGWERYFSGDSDLIQYHKRYSIDLISLPRDFSKFNSVYMYDIVIKNPNTFHVHVRDFH 111
[Close]
BLAST of C09p66190.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF2572571.1 (hypothetical protein F2Q70_00006342 [Brassica cretica])

HSP 1 Score: 217 bits (553), Expect = 2.810e-71
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 0 
Query:    1 MSGVWVFKNGVIRLVENPYQSGGVTHGRRNVLVYLPTGEVISSYSSLEQILMSLGWERYFSGDSDLIQYHKRYSIDLISLPRDFSKFNSVYMYDIVIKNPNTFHVHVRDFH 111
            MSGVWVFKNGVIRLVENPYQSGGVTHGRRNVLVYLPTGEVISSYSSLEQILMSLGWERYFSGDSDLIQYHKR+SIDLISLPRDFSKFNSVYMYDIVIKNPNTFHV  RDFH
Sbjct:    1 MSGVWVFKNGVIRLVENPYQSGGVTHGRRNVLVYLPTGEVISSYSSLEQILMSLGWERYFSGDSDLIQYHKRFSIDLISLPRDFSKFNSVYMYDIVIKNPNTFHV--RDFH 109
[Close]
BLAST of C09p66190.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD34117.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 215 bits (548), Expect = 1.630e-70
Identity = 108/111 (97.30%), Postives = 108/111 (97.30%), Query Frame = 0 
Query:    1 MSGVWVFKNGVIRLVENPYQSGGVTHGRRNVLVYLPTGEVISSYSSLEQILMSLGWERYFSGDSDLIQYHKRYSIDLISLPRDFSKFNSVYMYDIVIKNPNTFHVHVRDFH 111
            MSGVWVFKNGVIRLVENPYQSGGVTHGRRNVLVYLPTGEVISSYSSLEQILMSLGWERYFSGDSDLIQYHKR SIDLISLPRDFSKFNSVYMYDIVIKNPNTFHV  RDFH
Sbjct:    1 MSGVWVFKNGVIRLVENPYQSGGVTHGRRNVLVYLPTGEVISSYSSLEQILMSLGWERYFSGDSDLIQYHKRSSIDLISLPRDFSKFNSVYMYDIVIKNPNTFHV--RDFH 109
[Close]
BLAST of C09p66190.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013610257.1 (PREDICTED: flowering-promoting factor 1-like protein 2 [Brassica oleracea var. oleracea])

HSP 1 Score: 214 bits (545), Expect = 4.670e-70
Identity = 107/111 (96.40%), Postives = 108/111 (97.30%), Query Frame = 0 
Query:    1 MSGVWVFKNGVIRLVENPYQSGGVTHGRRNVLVYLPTGEVISSYSSLEQILMSLGWERYFSGDSDLIQYHKRYSIDLISLPRDFSKFNSVYMYDIVIKNPNTFHVHVRDFH 111
            MSGVWVFKNGVIRLVENPYQSGGVTHGRRNVLVYLPTGEVISSYSSLEQILMSLGWERYF+GDSDLIQYHKR SIDLISLPRDFSKFNSVYMYDIVIKNPNTFHV  RDFH
Sbjct:    1 MSGVWVFKNGVIRLVENPYQSGGVTHGRRNVLVYLPTGEVISSYSSLEQILMSLGWERYFTGDSDLIQYHKRSSIDLISLPRDFSKFNSVYMYDIVIKNPNTFHV--RDFH 109
[Close]
BLAST of C09p66190.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF3561571.1 (hypothetical protein DY000_02019316 [Brassica cretica])

HSP 1 Score: 212 bits (540), Expect = 2.710e-69
Identity = 107/111 (96.40%), Postives = 107/111 (96.40%), Query Frame = 0 
Query:    1 MSGVWVFKNGVIRLVENPYQSGGVTHGRRNVLVYLPTGEVISSYSSLEQILMSLGWERYFSGDSDLIQYHKRYSIDLISLPRDFSKFNSVYMYDIVIKNPNTFHVHVRDFH 111
            MSGVWVFKNGVIRLVENPYQSGGVTHGRRNVLVYLPTGEVISSYSSLEQILMSLGWERYFSGDSDLIQYHKR SIDLISLPRDFSKFNSVYMYDIVIKNPNTFHV  RD H
Sbjct:    1 MSGVWVFKNGVIRLVENPYQSGGVTHGRRNVLVYLPTGEVISSYSSLEQILMSLGWERYFSGDSDLIQYHKRSSIDLISLPRDFSKFNSVYMYDIVIKNPNTFHV--RDSH 109
[Close]
BLAST of C09p66190.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013666122.1 (flowering-promoting factor 1-like protein 2 [Brassica napus] >XP_033137631.1 flowering-promoting factor 1-like protein 2 [Brassica rapa] >RID42410.1 hypothetical protein BRARA_J02293 [Brassica rapa] >VDD20163.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 211 bits (538), Expect = 5.470e-69
Identity = 106/111 (95.50%), Postives = 107/111 (96.40%), Query Frame = 0 
Query:    1 MSGVWVFKNGVIRLVENPYQSGGVTHGRRNVLVYLPTGEVISSYSSLEQILMSLGWERYFSGDSDLIQYHKRYSIDLISLPRDFSKFNSVYMYDIVIKNPNTFHVHVRDFH 111
            MSGVWVFKNGVIRLVENP QSGGVTHGRRNVLVYLPTGEV+SSYSSLEQILMSLGWERYFSGDSDLIQYHKR SIDLISLPRDFSKFNSVYMYDIVIKNPNTFHV  RDFH
Sbjct:    1 MSGVWVFKNGVIRLVENPNQSGGVTHGRRNVLVYLPTGEVVSSYSSLEQILMSLGWERYFSGDSDLIQYHKRSSIDLISLPRDFSKFNSVYMYDIVIKNPNTFHV--RDFH 109
[Close]
BLAST of C09p66190.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013639865.1 (flowering-promoting factor 1-like protein 2 [Brassica napus] >XP_022575249.1 flowering-promoting factor 1-like protein 2 [Brassica napus] >VDD34123.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 210 bits (534), Expect = 2.230e-68
Identity = 105/111 (94.59%), Postives = 107/111 (96.40%), Query Frame = 0 
Query:    1 MSGVWVFKNGVIRLVENPYQSGGVTHGRRNVLVYLPTGEVISSYSSLEQILMSLGWERYFSGDSDLIQYHKRYSIDLISLPRDFSKFNSVYMYDIVIKNPNTFHVHVRDFH 111
            MSGVWVFKNGVIRLVENP QSGGVTHGRRNVLVYLPTGEV+SSYSSLEQILMSLGWERYFSGDSDLIQYHKR SIDLISLPRDFSKFNSVYMYDIVIKNPNTFHV  R+FH
Sbjct:    1 MSGVWVFKNGVIRLVENPNQSGGVTHGRRNVLVYLPTGEVVSSYSSLEQILMSLGWERYFSGDSDLIQYHKRSSIDLISLPRDFSKFNSVYMYDIVIKNPNTFHV--REFH 109
[Close]
BLAST of C09p66190.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF2571661.1 (hypothetical protein F2Q70_00006343 [Brassica cretica])

HSP 1 Score: 209 bits (531), Expect = 6.390e-68
Identity = 105/110 (95.45%), Postives = 106/110 (96.36%), Query Frame = 0 
Query:    1 MSGVWVFKNGVIRLVENPYQSGGVTHGRRNVLVYLPTGEVISSYSSLEQILMSLGWERYFSGDSDLIQYHKRYSIDLISLPRDFSKFNSVYMYDIVIKNPNTFHVHVRDF 110
            MSGVWVFKNGVIRLVENP QSGGVTHGRRNVLVYLPTGEV+SSYSSLEQILMSLGWERYFSGDSDLIQYHKR SIDLISLPRDFSKFNSVYMYDIVIKNPNTFHV  RDF
Sbjct:    1 MSGVWVFKNGVIRLVENPNQSGGVTHGRRNVLVYLPTGEVVSSYSSLEQILMSLGWERYFSGDSDLIQYHKRSSIDLISLPRDFSKFNSVYMYDIVIKNPNTFHV--RDF 108
[Close]
BLAST of C09p66190.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_018444293.1 (PREDICTED: flowering-promoting factor 1-like protein 2 [Raphanus sativus])

HSP 1 Score: 208 bits (530), Expect = 9.080e-68
Identity = 104/111 (93.69%), Postives = 106/111 (95.50%), Query Frame = 0 
Query:    1 MSGVWVFKNGVIRLVENPYQSGGVTHGRRNVLVYLPTGEVISSYSSLEQILMSLGWERYFSGDSDLIQYHKRYSIDLISLPRDFSKFNSVYMYDIVIKNPNTFHVHVRDFH 111
            MSGVWVFKNGVIRLVENP QSGGVTHGRRNVLVYLPTGEV+SSYSSLEQILMSLGWERYF+GD DLIQYHKR SIDLISLPRDFSKFNSVYMYDIVIKNPNTFHV  RDFH
Sbjct:    1 MSGVWVFKNGVIRLVENPNQSGGVTHGRRNVLVYLPTGEVVSSYSSLEQILMSLGWERYFNGDPDLIQYHKRSSIDLISLPRDFSKFNSVYMYDIVIKNPNTFHV--RDFH 109
[Close]
BLAST of C09p66190.1_BnaDARv10-RA vs. GenBank_protein
Match: VDC85839.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 204 bits (518), Expect = 6.150e-66
Identity = 101/111 (90.99%), Postives = 105/111 (94.59%), Query Frame = 0 
Query:    1 MSGVWVFKNGVIRLVENPYQSGGVTHGRRNVLVYLPTGEVISSYSSLEQILMSLGWERYFSGDSDLIQYHKRYSIDLISLPRDFSKFNSVYMYDIVIKNPNTFHVHVRDFH 111
            MSGVW+F NGVIRLVENP QSGGVTHGRRNVLVYLPTGEV+SSYSSLEQILMSLGWERYF+GDS+LIQYHKR SIDLISLPRDFSKFNSVYMYDIVIKNPN FHV  RDFH
Sbjct:    1 MSGVWIFNNGVIRLVENPNQSGGVTHGRRNVLVYLPTGEVVSSYSSLEQILMSLGWERYFNGDSNLIQYHKRSSIDLISLPRDFSKFNSVYMYDIVIKNPNIFHV--RDFH 109
The following BLAST results are available for this feature:
BLAST of C09p66190.1_BnaDARv10-RA vs. GenBank_protein
Analysis Date: 2021-04-17 (Diamond on Darmor-bzh OGS10 v10 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
XP_013708956.11.600e-75100.00flowering-promoting factor 1-like protein 2 [Brass... [more]
KAF2572571.12.810e-7197.30hypothetical protein F2Q70_00006342 [Brassica cret... [more]
VDD34117.11.630e-7097.30unnamed protein product [Brassica oleracea][more]
XP_013610257.14.670e-7096.40PREDICTED: flowering-promoting factor 1-like prote... [more]
KAF3561571.12.710e-6996.40hypothetical protein DY000_02019316 [Brassica cret... [more]
XP_013666122.15.470e-6995.50flowering-promoting factor 1-like protein 2 [Brass... [more]
XP_013639865.12.230e-6894.59flowering-promoting factor 1-like protein 2 [Brass... [more]
KAF2571661.16.390e-6895.45hypothetical protein F2Q70_00006343 [Brassica cret... [more]
XP_018444293.19.080e-6893.69PREDICTED: flowering-promoting factor 1-like prote... [more]
VDC85839.16.150e-6690.99unnamed protein product [Brassica oleracea][more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009909 regulation of flower development
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
InterPro
Analysis Name: InterProScan on Darmor-bzh OGS10 v10
Date Performed: 2021-04-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33433:SF14FLOWERING-PROMOTING FACTOR 1coord: 1..106
IPR039274Flowering-promoting factor 1PANTHERPTHR33433FLOWERING-PROMOTING FACTOR 1-LIKE PROTEIN 1coord: 1..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C09_BnaDARv10contigC09_BnaDARv10:60814298..60814633 -    View in Apollo
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on Darmor-bzh OGS10 v102021-04-17
Diamond on Darmor-bzh OGS10 v10 vs NR2021-04-17
Blast2GO on Darmor-bzh OGS10 v102021-04-17
Darmor-bzh OGS10 v102020-07-22
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
C09p66190.1_BnaDARv10-RAC09p66190.1_BnaDARv10-RABrassica napusmRNAC09_BnaDARv10 60813604..60814703 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>C09p66190.1_BnaDARv10-PA ID=C09p66190.1_BnaDARv10-PA|Name=C09p66190.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=112bp
MSGVWVFKNGVIRLVENPYQSGGVTHGRRNVLVYLPTGEVISSYSSLEQI
LMSLGWERYFSGDSDLIQYHKRYSIDLISLPRDFSKFNSVYMYDIVIKNP
NTFHVHVRDFH.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039274FPF1
Vocabulary: Biological Process
TermDefinition
GO:0010228vegetative to reproductive phase transition of meristem
GO:0009909regulation of flower development