C09p65860.1_BnaDARv10-PA (polypeptide) Brassica napus

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	C09p65860.1_BnaDARv10-RA
Unique Name	C09p65860.1_BnaDARv10-PA
Type	polypeptide
Organism	Brassica napus (cv. Darmor-bzh, rapeseed)
Sequence length	149

Homology

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BLAST of C09p65860.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013610552.1 (PREDICTED: auxin-responsive protein SAUR22 [Brassica oleracea var. oleracea] >VDD34085.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 302 bits (774), Expect = 9.220e-104
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0

Query:    1 MAGGIAKCSKIRHIVKLRQMLRQWRNKARMSSARRCVPSDVPSGYVAVYVGSSRRRFVVRATHLNHPVLKNLLVKAEEEFGFANHGPLVIPCEESVFEESIRLINRSCRFNCTDDLKKNRHGGSRSKLDLLIESRPLLHGVSDKANIW 148
            MAGGIAKCSKIRHIVKLRQMLRQWRNKARMSSARRCVPSDVPSGYVAVYVGSSRRRFVVRATHLNHPVLKNLLVKAEEEFGFANHGPLVIPCEESVFEESIRLINRSCRFNCTDDLKKNRHGGSRSKLDLLIESRPLLHGVSDKANIW
Sbjct:    1 MAGGIAKCSKIRHIVKLRQMLRQWRNKARMSSARRCVPSDVPSGYVAVYVGSSRRRFVVRATHLNHPVLKNLLVKAEEEFGFANHGPLVIPCEESVFEESIRLINRSCRFNCTDDLKKNRHGGSRSKLDLLIESRPLLHGVSDKANIW 148

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BLAST of C09p65860.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_009122007.1 (auxin-responsive protein SAUR50 [Brassica rapa] >XP_013666115.1 auxin-responsive protein SAUR50 [Brassica napus] >VDD20121.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 300 bits (768), Expect = 7.580e-103
Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = 0

Query:    1 MAGGIAKCSKIRHIVKLRQMLRQWRNKARMSSARRCVPSDVPSGYVAVYVGSSRRRFVVRATHLNHPVLKNLLVKAEEEFGFANHGPLVIPCEESVFEESIRLINRSCRFNCTDDLKKNRHGGSRSKLDLLIESRPLLHGVSDKANIW 148
            MAGGIAKCSKIRHIVKLRQMLRQWRNKARMSSARRCVPSDVPSGYVAVYVGSSRRRFVVRATHLNHPVLKNLLVKAEEEFGFANHGPLVIPCEESVFEESIRLINRSCRFNCTDDLKK RHGGSRSKLDLLIESRPLLHGVSDKANIW
Sbjct:    1 MAGGIAKCSKIRHIVKLRQMLRQWRNKARMSSARRCVPSDVPSGYVAVYVGSSRRRFVVRATHLNHPVLKNLLVKAEEEFGFANHGPLVIPCEESVFEESIRLINRSCRFNCTDDLKKTRHGGSRSKLDLLIESRPLLHGVSDKANIW 148

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BLAST of C09p65860.1_BnaDARv10-RA vs. GenBank_protein
Match: RID42381.1 (hypothetical protein BRARA_J02266 [Brassica rapa])

HSP 1 Score: 298 bits (762), Expect = 6.240e-102
Identity = 146/148 (98.65%), Postives = 146/148 (98.65%), Query Frame = 0

Query:    1 MAGGIAKCSKIRHIVKLRQMLRQWRNKARMSSARRCVPSDVPSGYVAVYVGSSRRRFVVRATHLNHPVLKNLLVKAEEEFGFANHGPLVIPCEESVFEESIRLINRSCRFNCTDDLKKNRHGGSRSKLDLLIESRPLLHGVSDKANIW 148
            MAGGIAKCSKIRHIVKLRQMLRQWRNKARMSSARRCVPSDVPSGYVAVYVGSSRRRFVVRATHLNHPVLKNLLVKAEEEFGFANHGPLVIPCEESVFEESIRLINRSCRFNCTDDLKK RHGGSRSKLDLLIESRPLLHGVSDKA IW
Sbjct:    1 MAGGIAKCSKIRHIVKLRQMLRQWRNKARMSSARRCVPSDVPSGYVAVYVGSSRRRFVVRATHLNHPVLKNLLVKAEEEFGFANHGPLVIPCEESVFEESIRLINRSCRFNCTDDLKKTRHGGSRSKLDLLIESRPLLHGVSDKATIW 148

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BLAST of C09p65860.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_018444452.1 (PREDICTED: auxin-responsive protein SAUR72-like [Raphanus sativus])

HSP 1 Score: 286 bits (731), Expect = 3.340e-97
Identity = 140/148 (94.59%), Postives = 143/148 (96.62%), Query Frame = 0

Query:    1 MAGGIAKCSKIRHIVKLRQMLRQWRNKARMSSARRCVPSDVPSGYVAVYVGSSRRRFVVRATHLNHPVLKNLLVKAEEEFGFANHGPLVIPCEESVFEESIRLINRSCRFNCTDDLKKNRHGGSRSKLDLLIESRPLLHGVSDKANIW 148
            MAGGI KCSKIRHIVKLRQMLRQWR+KARMSSARRCVPSDVPSG+VAVYVGSS RRFVVR THLNHPVL+NLLVKAEEEFGFANHGPLVIPCEESVFEESIRLINRSCRFNCTDDLKKNR GGSRSKLDLLIESRPLLHGVSDKA IW
Sbjct:    1 MAGGIGKCSKIRHIVKLRQMLRQWRSKARMSSARRCVPSDVPSGHVAVYVGSSCRRFVVRTTHLNHPVLRNLLVKAEEEFGFANHGPLVIPCEESVFEESIRLINRSCRFNCTDDLKKNRQGGSRSKLDLLIESRPLLHGVSDKATIW 148

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BLAST of C09p65860.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_022564757.1 (auxin-responsive protein SAUR50-like [Brassica napus])

HSP 1 Score: 277 bits (709), Expect = 9.600e-94
Identity = 142/155 (91.61%), Postives = 142/155 (91.61%), Query Frame = 0

Query:    1 MAGGIAKCSKIRHIVKLRQMLRQWRNKA---RMSSARRC----VPSDVPSGYVAVYVGSSRRRFVVRATHLNHPVLKNLLVKAEEEFGFANHGPLVIPCEESVFEESIRLINRSCRFNCTDDLKKNRHGGSRSKLDLLIESRPLLHGVSDKANIW 148
            MAGGIAKCSKIRHIVKLRQMLRQWRNKA   R S    C    VPSDVPSGYVAVYVGSSRRRFVVRATHLNHPVLKNLLVKAEEEFGFANHGPLVIPCEESVFEESIRLINRSCRFNCTDDLKK RHGGSRSKLDLLIESRPLLHGVSDKANIW
Sbjct:    1 MAGGIAKCSKIRHIVKLRQMLRQWRNKALPFRYSLTCSCFSLPVPSDVPSGYVAVYVGSSRRRFVVRATHLNHPVLKNLLVKAEEEFGFANHGPLVIPCEESVFEESIRLINRSCRFNCTDDLKKTRHGGSRSKLDLLIESRPLLHGVSDKANIW 155

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BLAST of C09p65860.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_006399598.1 (auxin-responsive protein SAUR50 [Eutrema salsugineum] >ESQ41051.1 hypothetical protein EUTSA_v10015745mg [Eutrema salsugineum])

HSP 1 Score: 264 bits (675), Expect = 1.160e-88
Identity = 131/148 (88.51%), Postives = 137/148 (92.57%), Query Frame = 0

Query:    1 MAGGIAKCSKIRHIVKLRQMLRQWRNKARMSSARRCVPSDVPSGYVAVYVGSSRRRFVVRATHLNHPVLKNLLVKAEEEFGFANHGPLVIPCEESVFEESIRLINRSCRFNCTDDLKKNRHGGSRSKLDLLIESRPLLHGVSDKANIW 148
            MAGG+AKCSKIRHIV+LRQMLRQWRNKARMSS RR VPSDVPSG+VAVYVGSS RRFVVRA+HLNHPV  NLLVKAEEEFGFANHGPLVIPCEESVFEESIRLI RS R  CTDDLKK+RHGG RSKLDLLIESRPLLHGVS+KA IW
Sbjct:    1 MAGGVAKCSKIRHIVRLRQMLRQWRNKARMSSVRRSVPSDVPSGHVAVYVGSSCRRFVVRASHLNHPVFTNLLVKAEEEFGFANHGPLVIPCEESVFEESIRLITRSGRLTCTDDLKKSRHGGIRSKLDLLIESRPLLHGVSEKAIIW 148

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BLAST of C09p65860.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013619671.1 (PREDICTED: auxin-responsive protein SAUR22-like [Brassica oleracea var. oleracea])

HSP 1 Score: 260 bits (665), Expect = 3.870e-87
Identity = 127/148 (85.81%), Postives = 135/148 (91.22%), Query Frame = 0

Query:    1 MAGGIAKCSKIRHIVKLRQMLRQWRNKARMSSARRCVPSDVPSGYVAVYVGSSRRRFVVRATHLNHPVLKNLLVKAEEEFGFANHGPLVIPCEESVFEESIRLINRSCRFNCTDDLKKNRHGGSRSKLDLLIESRPLLHGVSDKANIW 148
            MAG I KCSKIRHIVKLRQMLRQWR+KAR+SS RRCVPSDVPSGYVAV+VGSS RRFVVRATHLNHP++++LL KAEEEFGFANHGPLVIPCEESVFEESIRLI RSCRF CTD LKKNRHGG+RSKLD LIESRPLLH VS K  IW
Sbjct:    1 MAGVIGKCSKIRHIVKLRQMLRQWRSKARISSVRRCVPSDVPSGYVAVHVGSSCRRFVVRATHLNHPIIRSLLAKAEEEFGFANHGPLVIPCEESVFEESIRLITRSCRFTCTDGLKKNRHGGNRSKLDRLIESRPLLHDVSKKTIIW 148

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BLAST of C09p65860.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_006286600.1 (auxin-responsive protein SAUR50 [Capsella rubella] >EOA19498.1 hypothetical protein CARUB_v10002201mg [Capsella rubella])

HSP 1 Score: 259 bits (663), Expect = 8.070e-87
Identity = 130/149 (87.25%), Postives = 137/149 (91.95%), Query Frame = 0

Query:    1 MAGGIAKCSKIRHIVKLRQMLRQWRNKARMSSARRCVPSDVPSGYVAVYVGSSRRRFVVRATHLNHPVLKNLLVKAEEEFGFANHGPLVIPCEESVFEESIRLINRSCRFNCTDDLKKNRHGGSRSKLDLLI-ESRPLLHGVSDKANIW 148
            MAGGI KCSKIRHIVKLRQMLRQWR+KARMSS RRCVPSDVPSG+VAVYVGSS RRFVVRAT+LNHP+L NLL KAEEEFGFA+ GPLVIPCEESVFEESIR INRS RF CTDDLKK+RHGG RSKLDLL+ ESRPLLHGVSDKA IW
Sbjct:    1 MAGGIGKCSKIRHIVKLRQMLRQWRSKARMSSVRRCVPSDVPSGHVAVYVGSSCRRFVVRATYLNHPILANLLAKAEEEFGFASQGPLVIPCEESVFEESIRFINRSSRFTCTDDLKKSRHGGIRSKLDLLMMESRPLLHGVSDKAIIW 149

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BLAST of C09p65860.1_BnaDARv10-RA vs. GenBank_protein
Match: NP_196660.1 (SAUR-like auxin-responsive protein family [Arabidopsis thaliana] >ABD57511.1 At5g10990 [Arabidopsis thaliana] >AED91618.1 SAUR-like auxin-responsive protein family [Arabidopsis thaliana] >OAO91462.1 hypothetical protein AXX17_AT5G10670 [Arabidopsis thaliana] >CAA0401913.1 unnamed protein product [Arabidopsis thaliana] >CAB96854.1 putative protein [Arabidopsis thaliana])

HSP 1 Score: 259 bits (662), Expect = 1.110e-86
Identity = 129/148 (87.16%), Postives = 134/148 (90.54%), Query Frame = 0

Query:    1 MAGGIAKCSKIRHIVKLRQMLRQWRNKARMSSARRCVPSDVPSGYVAVYVGSSRRRFVVRATHLNHPVLKNLLVKAEEEFGFANHGPLVIPCEESVFEESIRLINRSCRFNCTDDLKKNRHGGSRSKLDLLIESRPLLHGVSDKANIW 148
            MAGGI KCSKIRHIVKLRQMLRQWRNKARMSS RR VPSDVPSG+VAVYVG S RRFVV AT+LNHP+L NLLVKAEEEFGFAN GPLVIPCEESVFEESIR I RS RF CTDDLKKNRHGG RSKLDLL+ESRPLLHGVS+KA IW
Sbjct:    1 MAGGIGKCSKIRHIVKLRQMLRQWRNKARMSSVRRSVPSDVPSGHVAVYVGRSCRRFVVLATYLNHPILMNLLVKAEEEFGFANQGPLVIPCEESVFEESIRFITRSSRFTCTDDLKKNRHGGIRSKLDLLMESRPLLHGVSEKAIIW 148

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BLAST of C09p65860.1_BnaDARv10-RA vs. GenBank_protein
Match: RID73224.1 (hypothetical protein BRARA_B00388 [Brassica rapa] >VDC84979.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 258 bits (658), Expect = 4.520e-86
Identity = 125/148 (84.46%), Postives = 134/148 (90.54%), Query Frame = 0

Query:    1 MAGGIAKCSKIRHIVKLRQMLRQWRNKARMSSARRCVPSDVPSGYVAVYVGSSRRRFVVRATHLNHPVLKNLLVKAEEEFGFANHGPLVIPCEESVFEESIRLINRSCRFNCTDDLKKNRHGGSRSKLDLLIESRPLLHGVSDKANIW 148
            MAGGI KCSKIRHIVKLRQMLRQWR+KAR SS RRCVPSDVPSGYVAV+VGSS RRFVV ATHLNHP++++LL KAEEEFGFANHGPLVIPC+ESVFEESIRLI RSCRF CTDDLKKNR GG+RSKLD +IESRPLLH VS K  IW
Sbjct:    1 MAGGIGKCSKIRHIVKLRQMLRQWRSKARSSSVRRCVPSDVPSGYVAVHVGSSCRRFVVCATHLNHPIIRSLLAKAEEEFGFANHGPLVIPCDESVFEESIRLITRSCRFTCTDDLKKNRRGGTRSKLDRMIESRPLLHDVSTKTIIW 148

The following BLAST results are available for this feature:

BLAST of C09p65860.1_BnaDARv10-RA vs. GenBank_protein

BLAST of C09p65860.1_BnaDARv10-RA vs. GenBank_protein
Analysis Date: 2021-04-17 (Diamond on Darmor-bzh OGS10 v10 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
XP_013610552.1	9.220e-104	100.00	PREDICTED: auxin-responsive protein SAUR22 [Brassi...	[more]
XP_009122007.1	7.580e-103	99.32	auxin-responsive protein SAUR50 [Brassica rapa] >X...	[more]
RID42381.1	6.240e-102	98.65	hypothetical protein BRARA_J02266 [Brassica rapa]	[more]
XP_018444452.1	3.340e-97	94.59	PREDICTED: auxin-responsive protein SAUR72-like [R...	[more]
XP_022564757.1	9.600e-94	91.61	auxin-responsive protein SAUR50-like [Brassica nap...	[more]
XP_006399598.1	1.160e-88	88.51	auxin-responsive protein SAUR50 [Eutrema salsugine...	[more]
XP_013619671.1	3.870e-87	85.81	PREDICTED: auxin-responsive protein SAUR22-like [B...	[more]
XP_006286600.1	8.070e-87	87.25	auxin-responsive protein SAUR50 [Capsella rubella]...	[more]
NP_196660.1	1.110e-86	87.16	SAUR-like auxin-responsive protein family [Arabido...	[more]
RID73224.1	4.520e-86	84.46	hypothetical protein BRARA_B00388 [Brassica rapa] ...	[more]

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GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin

InterPro

Analysis Name: InterProScan on Darmor-bzh OGS10 v10
Date Performed: 2021-04-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 16..104 e-value: 1.9E-29 score: 101.7
None	No IPR available	PANTHER	PTHR31374:SF130	SUBFAMILY NOT NAMED	coord: 6..141
None	No IPR available	PANTHER	PTHR31374	AUXIN-INDUCED PROTEIN-LIKE-RELATED	coord: 6..141

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C09_BnaDARv10	contig	C09_BnaDARv10:60642555..60643001 - View in Apollo

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on Darmor-bzh OGS10 v10	2021-04-17
Diamond on Darmor-bzh OGS10 v10 vs NR	2021-04-17
Blast2GO on Darmor-bzh OGS10 v10	2021-04-17
Darmor-bzh OGS10 v10	2020-07-22

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
C09p65860.1_BnaDARv10-RA	C09p65860.1_BnaDARv10-RA	Brassica napus	mRNA	C09_BnaDARv10 60642202..60643042 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>C09p65860.1_BnaDARv10-PA ID=C09p65860.1_BnaDARv10-PA|Name=C09p65860.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=149bp
MAGGIAKCSKIRHIVKLRQMLRQWRNKARMSSARRCVPSDVPSGYVAVYV
GSSRRRFVVRATHLNHPVLKNLLVKAEEEFGFANHGPLVIPCEESVFEES
IRLINRSCRFNCTDDLKKNRHGGSRSKLDLLIESRPLLHGVSDKANIW.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003676	SAUR_fam

Vocabulary: **Biological Process**
Term	Definition
GO:0009733	response to auxin

Orthology

View orthology data for C09p65860.1_BnaDARv10-PA

Metabolic Model

View data from metabolic model for C09p65860.1_BnaDARv10-PA