C09p65630.1_BnaDARv10-PA (polypeptide) Brassica napus

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameC09p65630.1_BnaDARv10-RA
Unique NameC09p65630.1_BnaDARv10-PA
Typepolypeptide
OrganismBrassica napus (cv. Darmor-bzh, rapeseed)
Sequence length668
Homology
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BLAST of C09p65630.1_BnaDARv10-RA vs. GenBank_protein
Match: CDY61661.1 (BnaCnng38220D [Brassica napus])

HSP 1 Score: 1280 bits (3312), Expect = 0.000e+0
Identity = 651/652 (99.85%), Postives = 651/652 (99.85%), Query Frame = 0 
Query:    1 MDYKGPLVTSPPLTPGETEESYICLTSASFTVCLCELFQGKMNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGVNKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXXXVEEHFYGEKDNDSELSSDDGKDEGN 652
            MDYKGPLVTSPPLTPGETEESYICLTSASFTVCLCELFQGKMNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGVNKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXXXVEEHFYGEKDNDSELSSDDGKDE N
Sbjct:    1 MDYKGPLVTSPPLTPGETEESYICLTSASFTVCLCELFQGKMNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGVNKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXXXVEEHFYGEKDNDSELSSDDGKDEDN 652
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BLAST of C09p65630.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD34063.1 (unnamed protein product, partial [Brassica oleracea])

HSP 1 Score: 1280 bits (3311), Expect = 0.000e+0
Identity = 649/652 (99.54%), Postives = 650/652 (99.69%), Query Frame = 0 
Query:    1 MDYKGPLVTSPPLTPGETEESYICLTSASFTVCLCELFQGKMNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGVNKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXXXVEEHFYGEKDNDSELSSDDGKDEGN 652
            MDYKGPLVTSPPLTPGETEESYICLTSASFTVCLCELFQGKMNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLE+KKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIA GLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGVNKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXX VEEHFYGEKDNDSELSSDDGKDEGN
Sbjct:    1 MDYKGPLVTSPPLTPGETEESYICLTSASFTVCLCELFQGKMNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLEKKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIACGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGVNKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXXDVEEHFYGEKDNDSELSSDDGKDEGN 652
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BLAST of C09p65630.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF3503124.1 (hypothetical protein F2Q69_00045046 [Brassica cretica])

HSP 1 Score: 1244 bits (3220), Expect = 0.000e+0
Identity = 634/638 (99.37%), Postives = 635/638 (99.53%), Query Frame = 0 
Query:   13 LTPGETEESYICLTSASFTVCLCELFQGKMNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGVNKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXXXVEEHFYGEKDNDSELSSDDGKDE 650
            LTPGETEESYICLTSASFTVCLCELFQGKMNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLE+KKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGVNKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESED XXXX  EHFYGEKDNDSELSSDDGKDE
Sbjct:    5 LTPGETEESYICLTSASFTVCLCELFQGKMNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLEKKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGVNKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDXXXXXXXEHFYGEKDNDSELSSDDGKDE 642
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BLAST of C09p65630.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013712031.1 (WD repeat-containing protein 43-like [Brassica napus])

HSP 1 Score: 1194 bits (3088), Expect = 0.000e+0
Identity = 610/611 (99.84%), Postives = 610/611 (99.84%), Query Frame = 0 
Query:   42 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGVNKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXXXVEEHFYGEKDNDSELSSDDGKDEGN 652
            MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGVNKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXXXVEEHFYGEKDNDSELSSDDGKDE N
Sbjct:    1 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGVNKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXXXVEEHFYGEKDNDSELSSDDGKDEDN 611
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BLAST of C09p65630.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013612355.1 (PREDICTED: WD repeat-containing protein 43 [Brassica oleracea var. oleracea])

HSP 1 Score: 1151 bits (2978), Expect = 0.000e+0
Identity = 588/612 (96.08%), Postives = 599/612 (97.88%), Query Frame = 0 
Query:   42 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQG-VNKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXXXVEEHFYGEKDNDSELSSDDGKDEGN 652
            MNLVNI+DVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGN+IRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGE+YIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLY+LAISEVGVCYFWYGSNV EL +AKPTKVALATED SSLKQHKGSLPTIFAAKLQG+LKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASK+GILLPI QSASKSKKGQ  VN+VTTLDRAHAEDALLPIARVADLHEKKSVQP SSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDG+DLEAHLPPKKLKS VLSMAPSTAFKTLEALVAMWQTRGCGG+Y LPWIYSI+VNHRHYIMSQEPKNQQLLNTLHKITKCRGT LQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQ IDESED XXXXVEEHFYGEKDNDSELSSDDGKDE N
Sbjct:    1 MNLVNIRDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNLIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGEKYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYVLAISEVGVCYFWYGSNVEELSNAKPTKVALATEDYSSLKQHKGSLPTIFAAKLQGVLKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKSGILLPIAQSASKSKKGQASVNRVTTLDRAHAEDALLPIARVADLHEKKSVQPQSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGIDLEAHLPPKKLKSAVLSMAPSTAFKTLEALVAMWQTRGCGGRYLLPWIYSIMVNHRHYIMSQEPKNQQLLNTLHKITKCRGTGLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQDIDESEDXXXXXVEEHFYGEKDNDSELSSDDGKDEDN 612
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BLAST of C09p65630.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013668085.1 (WD repeat-containing protein 43-like isoform X2 [Brassica napus])

HSP 1 Score: 1137 bits (2941), Expect = 0.000e+0
Identity = 582/610 (95.41%), Postives = 588/610 (96.39%), Query Frame = 0 
Query:   42 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGV-NKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXXXVEEHFYGEKDNDSELSSDDGKDE 650
            MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIAS EETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAK QSASCVLALEHPPVFVDSWGETDEKGLY+LAISEVGVCYFWYGSNV EL +AKPTKVALATE SSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGV NKVTTLDRAHAEDALLPIARVADLHEKKSVQP SSDKDTDM+DQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDG+DLEAHLPPKKLKS VLSMAPSTAFKTLEALVAMWQTRGCGGKY LPWIYSI+VNHRHYIMSQEPKNQQLLNTLHKITK RG  LQ LLQLSGRL LVTAQINKAAG ETQT +HEQ  DESEDE    VEEHFYGEKDNDSELSSDDGKDE
Sbjct:    1 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASAEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKMQSASCVLALEHPPVFVDSWGETDEKGLYVLAISEVGVCYFWYGSNVEELSNAKPTKVALATEGSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGVQNKVTTLDRAHAEDALLPIARVADLHEKKSVQPQSSDKDTDMIDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGIDLEAHLPPKKLKSAVLSMAPSTAFKTLEALVAMWQTRGCGGKYLLPWIYSIMVNHRHYIMSQEPKNQQLLNTLHKITKSRGAALQQLLQLSGRLQLVTAQINKAAGKETQTKVHEQETDESEDEEDD-VEEHFYGEKDNDSELSSDDGKDE 609
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BLAST of C09p65630.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD20076.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 1136 bits (2939), Expect = 0.000e+0
Identity = 585/610 (95.90%), Postives = 592/610 (97.05%), Query Frame = 0 
Query:   42 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGV-NKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXXXVEEHFYGEKDNDSELSSDDGKDE 650
            MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIAS EETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLY+LAISEVGVCYFWYGSNV EL +AKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGV NKVTTLDRAHAEDALLPIARVADLHEKKSVQP SSDKDTDM+DQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDG+DLEAHLPPKKLKS VLSMAPSTAFKTLEALVAMWQTRGCGGKY LPWIYSI+VNHRHYIMSQEPKNQQLLNTLHKITK RG  LQ LLQLSGRL LVTAQINKAAG ETQT +HEQ  DESE  XXXXVEEHFYGEKDNDSE+SSDDGKDE
Sbjct:    1 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASAEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYVLAISEVGVCYFWYGSNVEELSNAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGVQNKVTTLDRAHAEDALLPIARVADLHEKKSVQPQSSDKDTDMIDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGIDLEAHLPPKKLKSAVLSMAPSTAFKTLEALVAMWQTRGCGGKYLLPWIYSIMVNHRHYIMSQEPKNQQLLNTLHKITKSRGAALQQLLQLSGRLQLVTAQINKAAGKETQTKVHEQETDESEX-XXXXVEEHFYGEKDNDSEVSSDDGKDE 609
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BLAST of C09p65630.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013668084.1 (WD repeat-containing protein 43-like isoform X1 [Brassica napus])

HSP 1 Score: 1131 bits (2926), Expect = 0.000e+0
Identity = 582/614 (94.79%), Postives = 588/614 (95.77%), Query Frame = 0 
Query:   42 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGV-NKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQT----RGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXXXVEEHFYGEKDNDSELSSDDGKDE 650
            MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIAS EETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAK QSASCVLALEHPPVFVDSWGETDEKGLY+LAISEVGVCYFWYGSNV EL +AKPTKVALATE SSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGV NKVTTLDRAHAEDALLPIARVADLHEKKSVQP SSDKDTDM+DQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDG+DLEAHLPPKKLKS VLSMAPSTAFKTLEALVAMWQT    RGCGGKY LPWIYSI+VNHRHYIMSQEPKNQQLLNTLHKITK RG  LQ LLQLSGRL LVTAQINKAAG ETQT +HEQ  DESEDE    VEEHFYGEKDNDSELSSDDGKDE
Sbjct:    1 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASAEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKMQSASCVLALEHPPVFVDSWGETDEKGLYVLAISEVGVCYFWYGSNVEELSNAKPTKVALATEGSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGVQNKVTTLDRAHAEDALLPIARVADLHEKKSVQPQSSDKDTDMIDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGIDLEAHLPPKKLKSAVLSMAPSTAFKTLEALVAMWQTSFVNRGCGGKYLLPWIYSIMVNHRHYIMSQEPKNQQLLNTLHKITKSRGAALQQLLQLSGRLQLVTAQINKAAGKETQTKVHEQETDESEDEEDD-VEEHFYGEKDNDSELSSDDGKDE 613
[Close]
BLAST of C09p65630.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_009121974.1 (WD repeat-containing protein 43 isoform X2 [Brassica rapa] >RID42356.1 hypothetical protein BRARA_J02245 [Brassica rapa])

HSP 1 Score: 1128 bits (2918), Expect = 0.000e+0
Identity = 578/610 (94.75%), Postives = 585/610 (95.90%), Query Frame = 0 
Query:   42 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGV-NKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXXXVEEHFYGEKDNDSELSSDDGKDE 650
            MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIAS EETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETD KGLY+LAISEVGVCYFWYGSN+ EL SAKPTKVALATEDSS LK HKGSLPTIFAAKLQG+LKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQS SK KKGQGV NKVTTLDRAHA+DALLPIARVADLHEKKSV PHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDG+DLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKY LPWIYSI+VNHRHYIMSQEPKNQQLLNTLHKITK RG  LQ LLQLSGR  LVTAQINKAAG ETQT +HEQ  DESEDE    VEEHFYGEKDNDSELSSDDGKDE
Sbjct:    1 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASAEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDVKGLYVLAISEVGVCYFWYGSNIEELSSAKPTKVALATEDSS-LKNHKGSLPTIFAAKLQGVLKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSVSKPKKGQGVQNKVTTLDRAHADDALLPIARVADLHEKKSVHPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGIDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYLLPWIYSIMVNHRHYIMSQEPKNQQLLNTLHKITKSRGAALQQLLQLSGRSQLVTAQINKAAGKETQTKVHEQETDESEDEEDD-VEEHFYGEKDNDSELSSDDGKDE 608
[Close]
BLAST of C09p65630.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_009121972.1 (WD repeat-containing protein 43 isoform X1 [Brassica rapa] >RID42355.1 hypothetical protein BRARA_J02245 [Brassica rapa])

HSP 1 Score: 1122 bits (2903), Expect = 0.000e+0
Identity = 578/614 (94.14%), Postives = 585/614 (95.28%), Query Frame = 0 
Query:   42 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKGLYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPTIFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSASKSKKGQGV-NKVTTLDRAHAEDALLPIARVADLHEKKSVQPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQT----RGCGGKYFLPWIYSIIVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQINKAAGNETQTTLHEQVIDESEDEXXXXVEEHFYGEKDNDSELSSDDGKDE 650
            MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIAS EETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETD KGLY+LAISEVGVCYFWYGSN+ EL SAKPTKVALATEDSS LK HKGSLPTIFAAKLQG+LKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQS SK KKGQGV NKVTTLDRAHA+DALLPIARVADLHEKKSV PHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDG+DLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQT    RGCGGKY LPWIYSI+VNHRHYIMSQEPKNQQLLNTLHKITK RG  LQ LLQLSGR  LVTAQINKAAG ETQT +HEQ  DESEDE    VEEHFYGEKDNDSELSSDDGKDE
Sbjct:    1 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASAEETNIYTSGGKGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTKAVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTEDGKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDVKGLYVLAISEVGVCYFWYGSNIEELSSAKPTKVALATEDSS-LKNHKGSLPTIFAAKLQGVLKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGILLPITQSVSKPKKGQGVQNKVTTLDRAHADDALLPIARVADLHEKKSVHPHSSDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGIDLEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTSFVNRGCGGKYLLPWIYSIMVNHRHYIMSQEPKNQQLLNTLHKITKSRGAALQQLLQLSGRSQLVTAQINKAAGKETQTKVHEQETDESEDEEDD-VEEHFYGEKDNDSELSSDDGKDE 612
The following BLAST results are available for this feature:
BLAST of C09p65630.1_BnaDARv10-RA vs. GenBank_protein
Analysis Date: 2021-04-17 (Diamond on Darmor-bzh OGS10 v10 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
CDY61661.10.000e+099.85BnaCnng38220D [Brassica napus][more]
VDD34063.10.000e+099.54unnamed protein product, partial [Brassica olerace... [more]
KAF3503124.10.000e+099.37hypothetical protein F2Q69_00045046 [Brassica cret... [more]
XP_013712031.10.000e+099.84WD repeat-containing protein 43-like [Brassica nap... [more]
XP_013612355.10.000e+096.08PREDICTED: WD repeat-containing protein 43 [Brassi... [more]
XP_013668085.10.000e+095.41WD repeat-containing protein 43-like isoform X2 [B... [more]
VDD20076.10.000e+095.90unnamed protein product [Brassica rapa][more]
XP_013668084.10.000e+094.79WD repeat-containing protein 43-like isoform X1 [B... [more]
XP_009121974.10.000e+094.75WD repeat-containing protein 43 isoform X2 [Brassi... [more]
XP_009121972.10.000e+094.14WD repeat-containing protein 43 isoform X1 [Brassi... [more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006364 rRNA processing
cellular_component GO:0005730 nucleolus
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterProScan on Darmor-bzh OGS10 v10
Date Performed: 2021-04-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 228..268
e-value: 4.3E-4
score: 29.6
coord: 145..185
e-value: 0.42
score: 19.4
coord: 188..225
e-value: 0.038
score: 23.1
coord: 37..74
e-value: 57.0
score: 5.9
IPR001680WD40 repeatPFAMPF00400WD40coord: 48..74
e-value: 0.19
score: 12.6
coord: 230..267
e-value: 7.3E-4
score: 20.3
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 235..277
score: 8.804
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 53..83
score: 8.737
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 51..347
e-value: 5.1E-31
score: 109.8
IPR007148Small-subunit processome, Utp12PFAMPF04003Utp12coord: 504..597
e-value: 1.5E-8
score: 34.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 612..646
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 617..632
NoneNo IPR availablePANTHERPTHR45290OS03G0300300 PROTEINcoord: 42..647
NoneNo IPR availablePANTHERPTHR45290:SF1OS03G0300300 PROTEINcoord: 42..647
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 61..75
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 153..277
score: 11.497
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 22..325

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C09_BnaDARv10contigC09_BnaDARv10:60516776..60520328 -    View in Apollo
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on Darmor-bzh OGS10 v102021-04-17
Diamond on Darmor-bzh OGS10 v10 vs NR2021-04-17
Blast2GO on Darmor-bzh OGS10 v102021-04-17
Darmor-bzh OGS10 v102020-07-22
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
C09p65630.1_BnaDARv10-RAC09p65630.1_BnaDARv10-RABrassica napusmRNAC09_BnaDARv10 60516776..60520328 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>C09p65630.1_BnaDARv10-PA ID=C09p65630.1_BnaDARv10-PA|Name=C09p65630.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=668bp
MDYKGPLVTSPPLTPGETEESYICLTSASFTVCLCELFQGKMNLVNIKDV
LTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASVEETNIYTSGG
KGHLSVDYTCMKWLSLERKKKRKLGTSILVLGTGGGDVLALDVASGQLKW
RISDCHPGGVNAVSSSTKASCIYSGGADGMVCEIDPHSGNVIRKFKASTK
AVSSLSVSPDGKILATASAQLKTFKCSDLKKIQKFTGHPGGVRCVAFTED
GKFILSSAVGERYIAVWKTDGAKKQSASCVLALEHPPVFVDSWGETDEKG
LYILAISEVGVCYFWYGSNVVELGSAKPTKVALATEDSSSLKQHKGSLPT
IFAAKLQGILKPGSANAFIASGLLVKPSFQKMVLQFGNDLVLNASKNGIL
LPITQSASKSKKGQGVNKVTTLDRAHAEDALLPIARVADLHEKKSVQPHS
SDKDTDMVDQSQADYVETFSMEDKLRSLGILKGTDEPSSLSYASVIDGLD
LEAHLPPKKLKSTVLSMAPSTAFKTLEALVAMWQTRGCGGKYFLPWIYSI
IVNHRHYIMSQEPKNQQLLNTLHKITKCRGTVLQPLLQLSGRLHLVTAQI
NKAAGNETQTTLHEQVIDESEDEEEEDVEEHFYGEKDNDSELSSDDGKDE
GNYTFCFVFFLGYWFVE.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR019775WD40_repeat_CS
IPR007148SSU_processome_Utp12
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR001680WD40_repeat
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus