A01p11130.1_BnaDARv10-RA (mRNA) Brassica napus

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameA01p11130.1_BnaDARv10-RA
Unique NameA01p11130.1_BnaDARv10-RA
TypemRNA
OrganismBrassica napus (cv. Darmor-bzh, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01_BnaDARv10contigA01_BnaDARv10:5585427..5587393 +    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Darmor-bzh OGS10 v102020-07-22
Properties
Property NameValue
Stop1
Start1
Model size1967
Exons1
Cds size1791
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
A01p11130.1_BnaDARv10A01p11130.1_BnaDARv10Brassica napusgeneA01_BnaDARv10 5585427..5587393 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340551.7138553-CDS-A01_BnaDARv10:5585426..55872171626340551.7138553-CDS-A01_BnaDARv10:5585426..5587217Brassica napusCDSA01_BnaDARv10 5585427..5587217 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p11130.1_BnaDARv10_exon1A01p11130.1_BnaDARv10_exon1Brassica napusexonA01_BnaDARv10 5585427..5587393 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340551.7226763-three_prime_UTR-A01_BnaDARv10:5587217..55873931626340551.7226763-three_prime_UTR-A01_BnaDARv10:5587217..5587393Brassica napusthree_prime_UTRA01_BnaDARv10 5587218..5587393 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p11130.1_BnaDARv10-RAA01p11130.1_BnaDARv10-PABrassica napuspolypeptideA01_BnaDARv10 5585427..5587217 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>A01p11130.1_BnaDARv10-RA ID=A01p11130.1_BnaDARv10-RA|Name=A01p11130.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1967bp|location=Sequence derived from alignment at A01_BnaDARv10:5585427..5587393+ (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTCTCTTTCTTCCTCTTCCTTCATCTCCACCTTCTCTCCTCCATC
CTCTCTTCTTCTTCCCCGCCCTTCTTCCTCTCGCCGTCTCCTCCGTATCA
ACTCCGCCGTCGTCGAAGAACGATCGCCCATCACTAACCCAAGCCAAAAC
AATGACCTTCCTCCGAGCAAACCTAAGAAACTCTACACTCATCGAACCAA
CCACACCGCCGTTTCATCTCCCGCGAAACCCCGACCACAACCACAAACGT
CTCTAGCAACAGCTCTCTTCACCACCATGGAAGAAGTCATCAACACGTTT
ATCGACCCACCGTCACGTCCTTCCGTAGATCCAAAACACGTCCTCTCAGA
CAACTTCGCTCCTGTCCTCGACGAGCTTCCTCCCACTGAGTGCCAGATCA
TCCACGGCTCTCTTCCGCCGTCTCTCAACGGCGCTTACATCCGTAACGGC
CCTAACCCACAGTTTCTCCCACGTGGTCCCTACCATTTATTTGACGGTGA
CGGTATGCTTCACGCGATCCGCATCCGTGACGGTAAAGCCACGCTCTGCA
GCAGATACGTCAAGACTTACAAATACAACGTTGAGAAACAAACCGGAACT
CCGGTTATCCCTAACGTCTTTTCTGGATTTAACGGCGTACCGGCGTCAAT
GGCTCGCGGAGCTTTAACGGCGTTTAGAGTTTTAGCTGGACAGTTTAATC
CGATCAACGGCATTGGTTTAGCGAACACGAGCCTCGCTTTCTTCTGTAAC
CGTCTCTTCGCTTTAGGAGAATCCGATTTACCGTACGCCGTCCGATTAAC
GGAGAGCGGAGACATCGTGACGATCGGACGGCACGATTTCGACGGGAAGT
TAGCGATGAGCATGACAGCTCATCCGAAAACCGATCCCGAAACCGGAGAG
ACGTTCGCTTTCCGGTACGGTCCGGTTCCACCGTTTCTAACGTTTTTCCG
GTTCGACTCGACCGGGAATAAGCGAAAAGACGTTCCGGTTTTCTCCATGA
CGTCTCCCTCCTTCCTCCACGACTTCGCGATCACGAGCCGTTACGCGATC
TTCTCGGAGATTCAGATTCGGATGAGGATGGACTCGATGCTCGAAGGAGG
ATCTCCCGTCGGCGCCGATAACGGCAAAACGCCGAGGCTCGGAGTGATCC
CGCGCTACGCCGAAGGCGAATCGGAGATGAAATGGTTCGAGGTTCCTGGA
TTCAACATCATCCACGCCATCAACGCCTGGGACGAAGACGACGGTGACAC
CATCGTTCTCATCGCTCCCAACATTATGTCGATCGAGCACACGCTGGAGA
GGATGGAGCTCGTCCACGCCTTGGTGGAGAAGGTGAAGATCGATCTCGTC
ACCGGGATCGTGACACGTCATCCGATCTCCGCGAGGAACCTCGATTTCGC
CGTGATCAATCCGGCGTTCGTTGGGAGACGGAGCCGGTACGTGTACGCGG
CGATCGGAGATCCGATGCCGAAGATCTCCGGGGTGGTGAAGCTCGACGTG
ACTAGAGGAGATAGGGACGATTGCACGGTGGCGCGTAGGATGTACGGTCC
AGGTTGTTACGGAGGAGAACCGTTTTTCGTAGCTAGGGATCCTGGTGATC
CGGAGGCGGAGGAGGATGACGGTTACGTGGTGACGTATGTGCATGATGAG
GTGGCGGGAGAGTCGAAGTTTCTTGTGATGGACGCGAAGTCGCCGGAGCT
TGAGGTCGTAGCCGCTGTGAGGTTGCCGCGAAGGGTTCCGTACGGATTCC
ATGGACTATTTGTCAAGGAGAGTGACCTTAATAAGCTTTAGTGATAGAAT
CTATAGGTAATTAAACAAAGGATTAAGTTCTTAATCACGTTCCGTATAAT
GGAAACAAAACATATATGGTGTTGTTGCATTTTAAACATTATAGTATACA
TAGTTTGGTAGTTGTCGAATGTATATAATAATATAAGCCTGTTAATAAAA
AACGTATTATTCATTTC
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protein sequence of A01p11130.1_BnaDARv10-RA

>A01p11130.1_BnaDARv10-PA ID=A01p11130.1_BnaDARv10-PA|Name=A01p11130.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=597bp
MDSLSSSSFISTFSPPSSLLLPRPSSSRRLLRINSAVVEERSPITNPSQN
NDLPPSKPKKLYTHRTNHTAVSSPAKPRPQPQTSLATALFTTMEEVINTF
IDPPSRPSVDPKHVLSDNFAPVLDELPPTECQIIHGSLPPSLNGAYIRNG
PNPQFLPRGPYHLFDGDGMLHAIRIRDGKATLCSRYVKTYKYNVEKQTGT
PVIPNVFSGFNGVPASMARGALTAFRVLAGQFNPINGIGLANTSLAFFCN
RLFALGESDLPYAVRLTESGDIVTIGRHDFDGKLAMSMTAHPKTDPETGE
TFAFRYGPVPPFLTFFRFDSTGNKRKDVPVFSMTSPSFLHDFAITSRYAI
FSEIQIRMRMDSMLEGGSPVGADNGKTPRLGVIPRYAEGESEMKWFEVPG
FNIIHAINAWDEDDGDTIVLIAPNIMSIEHTLERMELVHALVEKVKIDLV
TGIVTRHPISARNLDFAVINPAFVGRRSRYVYAAIGDPMPKISGVVKLDV
TRGDRDDCTVARRMYGPGCYGGEPFFVARDPGDPEAEEDDGYVVTYVHDE
VAGESKFLVMDAKSPELEVVAAVRLPRRVPYGFHGLFVKESDLNKL.
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mRNA from alignment at A01_BnaDARv10:5585427..5587393+

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>A01p11130.1_BnaDARv10-RA ID=A01p11130.1_BnaDARv10-RA|Name=A01p11130.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1967bp|location=Sequence derived from alignment at A01_BnaDARv10:5585427..5587393+ (Brassica napus)
ATGGACTCTCTTTCTTCCTCTTCCTTCATCTCCACCTTCTCTCCTCCATC CTCTCTTCTTCTTCCCCGCCCTTCTTCCTCTCGCCGTCTCCTCCGTATCA ACTCCGCCGTCGTCGAAGAACGATCGCCCATCACTAACCCAAGCCAAAAC AATGACCTTCCTCCGAGCAAACCTAAGAAACTCTACACTCATCGAACCAA CCACACCGCCGTTTCATCTCCCGCGAAACCCCGACCACAACCACAAACGT CTCTAGCAACAGCTCTCTTCACCACCATGGAAGAAGTCATCAACACGTTT ATCGACCCACCGTCACGTCCTTCCGTAGATCCAAAACACGTCCTCTCAGA CAACTTCGCTCCTGTCCTCGACGAGCTTCCTCCCACTGAGTGCCAGATCA TCCACGGCTCTCTTCCGCCGTCTCTCAACGGCGCTTACATCCGTAACGGC CCTAACCCACAGTTTCTCCCACGTGGTCCCTACCATTTATTTGACGGTGA CGGTATGCTTCACGCGATCCGCATCCGTGACGGTAAAGCCACGCTCTGCA GCAGATACGTCAAGACTTACAAATACAACGTTGAGAAACAAACCGGAACT CCGGTTATCCCTAACGTCTTTTCTGGATTTAACGGCGTACCGGCGTCAAT GGCTCGCGGAGCTTTAACGGCGTTTAGAGTTTTAGCTGGACAGTTTAATC CGATCAACGGCATTGGTTTAGCGAACACGAGCCTCGCTTTCTTCTGTAAC CGTCTCTTCGCTTTAGGAGAATCCGATTTACCGTACGCCGTCCGATTAAC GGAGAGCGGAGACATCGTGACGATCGGACGGCACGATTTCGACGGGAAGT TAGCGATGAGCATGACAGCTCATCCGAAAACCGATCCCGAAACCGGAGAG ACGTTCGCTTTCCGGTACGGTCCGGTTCCACCGTTTCTAACGTTTTTCCG GTTCGACTCGACCGGGAATAAGCGAAAAGACGTTCCGGTTTTCTCCATGA CGTCTCCCTCCTTCCTCCACGACTTCGCGATCACGAGCCGTTACGCGATC TTCTCGGAGATTCAGATTCGGATGAGGATGGACTCGATGCTCGAAGGAGG ATCTCCCGTCGGCGCCGATAACGGCAAAACGCCGAGGCTCGGAGTGATCC CGCGCTACGCCGAAGGCGAATCGGAGATGAAATGGTTCGAGGTTCCTGGA TTCAACATCATCCACGCCATCAACGCCTGGGACGAAGACGACGGTGACAC CATCGTTCTCATCGCTCCCAACATTATGTCGATCGAGCACACGCTGGAGA GGATGGAGCTCGTCCACGCCTTGGTGGAGAAGGTGAAGATCGATCTCGTC ACCGGGATCGTGACACGTCATCCGATCTCCGCGAGGAACCTCGATTTCGC CGTGATCAATCCGGCGTTCGTTGGGAGACGGAGCCGGTACGTGTACGCGG CGATCGGAGATCCGATGCCGAAGATCTCCGGGGTGGTGAAGCTCGACGTG ACTAGAGGAGATAGGGACGATTGCACGGTGGCGCGTAGGATGTACGGTCC AGGTTGTTACGGAGGAGAACCGTTTTTCGTAGCTAGGGATCCTGGTGATC CGGAGGCGGAGGAGGATGACGGTTACGTGGTGACGTATGTGCATGATGAG GTGGCGGGAGAGTCGAAGTTTCTTGTGATGGACGCGAAGTCGCCGGAGCT TGAGGTCGTAGCCGCTGTGAGGTTGCCGCGAAGGGTTCCGTACGGATTCC ATGGACTATTTGTCAAGGAGAGTGACCTTAATAAGCTTTAGTGATAGAAT CTATAGGTAATTAAACAAAGGATTAAGTTCTTAATCACGTTCCGTATAAT GGAAACAAAACATATATGGTGTTGTTGCATTTTAAACATTATAGTATACA TAGTTTGGTAGTTGTCGAATGTATATAATAATATAAGCCTGTTAATAAAA AACGTATTATTCATTTC
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Coding sequence (CDS) from alignment at A01_BnaDARv10:5585427..5587393+

>A01p11130.1_BnaDARv10-RA ID=A01p11130.1_BnaDARv10-RA|Name=A01p11130.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=1791bp|location=Sequence derived from alignment at A01_BnaDARv10:5585427..5587393+ (Brassica napus)
ATGGACTCTCTTTCTTCCTCTTCCTTCATCTCCACCTTCTCTCCTCCATC
CTCTCTTCTTCTTCCCCGCCCTTCTTCCTCTCGCCGTCTCCTCCGTATCA
ACTCCGCCGTCGTCGAAGAACGATCGCCCATCACTAACCCAAGCCAAAAC
AATGACCTTCCTCCGAGCAAACCTAAGAAACTCTACACTCATCGAACCAA
CCACACCGCCGTTTCATCTCCCGCGAAACCCCGACCACAACCACAAACGT
CTCTAGCAACAGCTCTCTTCACCACCATGGAAGAAGTCATCAACACGTTT
ATCGACCCACCGTCACGTCCTTCCGTAGATCCAAAACACGTCCTCTCAGA
CAACTTCGCTCCTGTCCTCGACGAGCTTCCTCCCACTGAGTGCCAGATCA
TCCACGGCTCTCTTCCGCCGTCTCTCAACGGCGCTTACATCCGTAACGGC
CCTAACCCACAGTTTCTCCCACGTGGTCCCTACCATTTATTTGACGGTGA
CGGTATGCTTCACGCGATCCGCATCCGTGACGGTAAAGCCACGCTCTGCA
GCAGATACGTCAAGACTTACAAATACAACGTTGAGAAACAAACCGGAACT
CCGGTTATCCCTAACGTCTTTTCTGGATTTAACGGCGTACCGGCGTCAAT
GGCTCGCGGAGCTTTAACGGCGTTTAGAGTTTTAGCTGGACAGTTTAATC
CGATCAACGGCATTGGTTTAGCGAACACGAGCCTCGCTTTCTTCTGTAAC
CGTCTCTTCGCTTTAGGAGAATCCGATTTACCGTACGCCGTCCGATTAAC
GGAGAGCGGAGACATCGTGACGATCGGACGGCACGATTTCGACGGGAAGT
TAGCGATGAGCATGACAGCTCATCCGAAAACCGATCCCGAAACCGGAGAG
ACGTTCGCTTTCCGGTACGGTCCGGTTCCACCGTTTCTAACGTTTTTCCG
GTTCGACTCGACCGGGAATAAGCGAAAAGACGTTCCGGTTTTCTCCATGA
CGTCTCCCTCCTTCCTCCACGACTTCGCGATCACGAGCCGTTACGCGATC
TTCTCGGAGATTCAGATTCGGATGAGGATGGACTCGATGCTCGAAGGAGG
ATCTCCCGTCGGCGCCGATAACGGCAAAACGCCGAGGCTCGGAGTGATCC
CGCGCTACGCCGAAGGCGAATCGGAGATGAAATGGTTCGAGGTTCCTGGA
TTCAACATCATCCACGCCATCAACGCCTGGGACGAAGACGACGGTGACAC
CATCGTTCTCATCGCTCCCAACATTATGTCGATCGAGCACACGCTGGAGA
GGATGGAGCTCGTCCACGCCTTGGTGGAGAAGGTGAAGATCGATCTCGTC
ACCGGGATCGTGACACGTCATCCGATCTCCGCGAGGAACCTCGATTTCGC
CGTGATCAATCCGGCGTTCGTTGGGAGACGGAGCCGGTACGTGTACGCGG
CGATCGGAGATCCGATGCCGAAGATCTCCGGGGTGGTGAAGCTCGACGTG
ACTAGAGGAGATAGGGACGATTGCACGGTGGCGCGTAGGATGTACGGTCC
AGGTTGTTACGGAGGAGAACCGTTTTTCGTAGCTAGGGATCCTGGTGATC
CGGAGGCGGAGGAGGATGACGGTTACGTGGTGACGTATGTGCATGATGAG
GTGGCGGGAGAGTCGAAGTTTCTTGTGATGGACGCGAAGTCGCCGGAGCT
TGAGGTCGTAGCCGCTGTGAGGTTGCCGCGAAGGGTTCCGTACGGATTCC
ATGGACTATTTGTCAAGGAGAGTGACCTTAATAAGCTTTAG
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