A01p11130.1_BnaDARv10-RA (mRNA) Brassica napus

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	A01p11130.1_BnaDARv10-RA
Unique Name	A01p11130.1_BnaDARv10-RA
Type	mRNA
Organism	Brassica napus (cv. Darmor-bzh, rapeseed)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A01_BnaDARv10	contig	A01_BnaDARv10:5585427..5587393 + View in Apollo

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Darmor-bzh OGS10 v10	2020-07-22

Properties


Property Name	Value
Stop	1
Start	1
Model size	1967
Exons	1
Cds size	1791

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
A01p11130.1_BnaDARv10	A01p11130.1_BnaDARv10	Brassica napus	gene	A01_BnaDARv10 5585427..5587393 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1626340551.7138553-CDS-A01_BnaDARv10:5585426..5587217	1626340551.7138553-CDS-A01_BnaDARv10:5585426..5587217	Brassica napus	CDS	A01_BnaDARv10 5585427..5587217 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
A01p11130.1_BnaDARv10_exon1	A01p11130.1_BnaDARv10_exon1	Brassica napus	exon	A01_BnaDARv10 5585427..5587393 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1626340551.7226763-three_prime_UTR-A01_BnaDARv10:5587217..5587393	1626340551.7226763-three_prime_UTR-A01_BnaDARv10:5587217..5587393	Brassica napus	three_prime_UTR	A01_BnaDARv10 5587218..5587393 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
A01p11130.1_BnaDARv10-RA	A01p11130.1_BnaDARv10-PA	Brassica napus	polypeptide	A01_BnaDARv10 5585427..5587217 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at A01_BnaDARv10:5585427..5587393+
coding sequence from alignment at A01_BnaDARv10:5585427..5587393+

spliced messenger RNA

>A01p11130.1_BnaDARv10-RA ID=A01p11130.1_BnaDARv10-RA|Name=A01p11130.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1967bp|location=Sequence derived from alignment at A01_BnaDARv10:5585427..5587393+ (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTCTCTTTCTTCCTCTTCCTTCATCTCCACCTTCTCTCCTCCATC
CTCTCTTCTTCTTCCCCGCCCTTCTTCCTCTCGCCGTCTCCTCCGTATCA
ACTCCGCCGTCGTCGAAGAACGATCGCCCATCACTAACCCAAGCCAAAAC
AATGACCTTCCTCCGAGCAAACCTAAGAAACTCTACACTCATCGAACCAA
CCACACCGCCGTTTCATCTCCCGCGAAACCCCGACCACAACCACAAACGT
CTCTAGCAACAGCTCTCTTCACCACCATGGAAGAAGTCATCAACACGTTT
ATCGACCCACCGTCACGTCCTTCCGTAGATCCAAAACACGTCCTCTCAGA
CAACTTCGCTCCTGTCCTCGACGAGCTTCCTCCCACTGAGTGCCAGATCA
TCCACGGCTCTCTTCCGCCGTCTCTCAACGGCGCTTACATCCGTAACGGC
CCTAACCCACAGTTTCTCCCACGTGGTCCCTACCATTTATTTGACGGTGA
CGGTATGCTTCACGCGATCCGCATCCGTGACGGTAAAGCCACGCTCTGCA
GCAGATACGTCAAGACTTACAAATACAACGTTGAGAAACAAACCGGAACT
CCGGTTATCCCTAACGTCTTTTCTGGATTTAACGGCGTACCGGCGTCAAT
GGCTCGCGGAGCTTTAACGGCGTTTAGAGTTTTAGCTGGACAGTTTAATC
CGATCAACGGCATTGGTTTAGCGAACACGAGCCTCGCTTTCTTCTGTAAC
CGTCTCTTCGCTTTAGGAGAATCCGATTTACCGTACGCCGTCCGATTAAC
GGAGAGCGGAGACATCGTGACGATCGGACGGCACGATTTCGACGGGAAGT
TAGCGATGAGCATGACAGCTCATCCGAAAACCGATCCCGAAACCGGAGAG
ACGTTCGCTTTCCGGTACGGTCCGGTTCCACCGTTTCTAACGTTTTTCCG
GTTCGACTCGACCGGGAATAAGCGAAAAGACGTTCCGGTTTTCTCCATGA
CGTCTCCCTCCTTCCTCCACGACTTCGCGATCACGAGCCGTTACGCGATC
TTCTCGGAGATTCAGATTCGGATGAGGATGGACTCGATGCTCGAAGGAGG
ATCTCCCGTCGGCGCCGATAACGGCAAAACGCCGAGGCTCGGAGTGATCC
CGCGCTACGCCGAAGGCGAATCGGAGATGAAATGGTTCGAGGTTCCTGGA
TTCAACATCATCCACGCCATCAACGCCTGGGACGAAGACGACGGTGACAC
CATCGTTCTCATCGCTCCCAACATTATGTCGATCGAGCACACGCTGGAGA
GGATGGAGCTCGTCCACGCCTTGGTGGAGAAGGTGAAGATCGATCTCGTC
ACCGGGATCGTGACACGTCATCCGATCTCCGCGAGGAACCTCGATTTCGC
CGTGATCAATCCGGCGTTCGTTGGGAGACGGAGCCGGTACGTGTACGCGG
CGATCGGAGATCCGATGCCGAAGATCTCCGGGGTGGTGAAGCTCGACGTG
ACTAGAGGAGATAGGGACGATTGCACGGTGGCGCGTAGGATGTACGGTCC
AGGTTGTTACGGAGGAGAACCGTTTTTCGTAGCTAGGGATCCTGGTGATC
CGGAGGCGGAGGAGGATGACGGTTACGTGGTGACGTATGTGCATGATGAG
GTGGCGGGAGAGTCGAAGTTTCTTGTGATGGACGCGAAGTCGCCGGAGCT
TGAGGTCGTAGCCGCTGTGAGGTTGCCGCGAAGGGTTCCGTACGGATTCC
ATGGACTATTTGTCAAGGAGAGTGACCTTAATAAGCTTTAGTGATAGAAT
CTATAGGTAATTAAACAAAGGATTAAGTTCTTAATCACGTTCCGTATAAT
GGAAACAAAACATATATGGTGTTGTTGCATTTTAAACATTATAGTATACA
TAGTTTGGTAGTTGTCGAATGTATATAATAATATAAGCCTGTTAATAAAA
AACGTATTATTCATTTC

protein sequence of A01p11130.1_BnaDARv10-RA

>A01p11130.1_BnaDARv10-PA ID=A01p11130.1_BnaDARv10-PA|Name=A01p11130.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=597bp
MDSLSSSSFISTFSPPSSLLLPRPSSSRRLLRINSAVVEERSPITNPSQN
NDLPPSKPKKLYTHRTNHTAVSSPAKPRPQPQTSLATALFTTMEEVINTF
IDPPSRPSVDPKHVLSDNFAPVLDELPPTECQIIHGSLPPSLNGAYIRNG
PNPQFLPRGPYHLFDGDGMLHAIRIRDGKATLCSRYVKTYKYNVEKQTGT
PVIPNVFSGFNGVPASMARGALTAFRVLAGQFNPINGIGLANTSLAFFCN
RLFALGESDLPYAVRLTESGDIVTIGRHDFDGKLAMSMTAHPKTDPETGE
TFAFRYGPVPPFLTFFRFDSTGNKRKDVPVFSMTSPSFLHDFAITSRYAI
FSEIQIRMRMDSMLEGGSPVGADNGKTPRLGVIPRYAEGESEMKWFEVPG
FNIIHAINAWDEDDGDTIVLIAPNIMSIEHTLERMELVHALVEKVKIDLV
TGIVTRHPISARNLDFAVINPAFVGRRSRYVYAAIGDPMPKISGVVKLDV
TRGDRDDCTVARRMYGPGCYGGEPFFVARDPGDPEAEEDDGYVVTYVHDE
VAGESKFLVMDAKSPELEVVAAVRLPRRVPYGFHGLFVKESDLNKL.

mRNA from alignment at A01_BnaDARv10:5585427..5587393+

Legend: CDSpolypeptideexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>A01p11130.1_BnaDARv10-RA ID=A01p11130.1_BnaDARv10-RA|Name=A01p11130.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1967bp|location=Sequence derived from alignment at A01_BnaDARv10:5585427..5587393+ (Brassica napus)
ATGGACTCTCTTTCTTCCTCTTCCTTCATCTCCACCTTCTCTCCTCCATC
CTCTCTTCTTCTTCCCCGCCCTTCTTCCTCTCGCCGTCTCCTCCGTATCA
ACTCCGCCGTCGTCGAAGAACGATCGCCCATCACTAACCCAAGCCAAAAC
AATGACCTTCCTCCGAGCAAACCTAAGAAACTCTACACTCATCGAACCAA
CCACACCGCCGTTTCATCTCCCGCGAAACCCCGACCACAACCACAAACGT
CTCTAGCAACAGCTCTCTTCACCACCATGGAAGAAGTCATCAACACGTTT
ATCGACCCACCGTCACGTCCTTCCGTAGATCCAAAACACGTCCTCTCAGA
CAACTTCGCTCCTGTCCTCGACGAGCTTCCTCCCACTGAGTGCCAGATCA
TCCACGGCTCTCTTCCGCCGTCTCTCAACGGCGCTTACATCCGTAACGGC
CCTAACCCACAGTTTCTCCCACGTGGTCCCTACCATTTATTTGACGGTGA
CGGTATGCTTCACGCGATCCGCATCCGTGACGGTAAAGCCACGCTCTGCA
GCAGATACGTCAAGACTTACAAATACAACGTTGAGAAACAAACCGGAACT
CCGGTTATCCCTAACGTCTTTTCTGGATTTAACGGCGTACCGGCGTCAAT
GGCTCGCGGAGCTTTAACGGCGTTTAGAGTTTTAGCTGGACAGTTTAATC
CGATCAACGGCATTGGTTTAGCGAACACGAGCCTCGCTTTCTTCTGTAAC
CGTCTCTTCGCTTTAGGAGAATCCGATTTACCGTACGCCGTCCGATTAAC
GGAGAGCGGAGACATCGTGACGATCGGACGGCACGATTTCGACGGGAAGT
TAGCGATGAGCATGACAGCTCATCCGAAAACCGATCCCGAAACCGGAGAG
ACGTTCGCTTTCCGGTACGGTCCGGTTCCACCGTTTCTAACGTTTTTCCG
GTTCGACTCGACCGGGAATAAGCGAAAAGACGTTCCGGTTTTCTCCATGA
CGTCTCCCTCCTTCCTCCACGACTTCGCGATCACGAGCCGTTACGCGATC
TTCTCGGAGATTCAGATTCGGATGAGGATGGACTCGATGCTCGAAGGAGG
ATCTCCCGTCGGCGCCGATAACGGCAAAACGCCGAGGCTCGGAGTGATCC
CGCGCTACGCCGAAGGCGAATCGGAGATGAAATGGTTCGAGGTTCCTGGA
TTCAACATCATCCACGCCATCAACGCCTGGGACGAAGACGACGGTGACAC
CATCGTTCTCATCGCTCCCAACATTATGTCGATCGAGCACACGCTGGAGA
GGATGGAGCTCGTCCACGCCTTGGTGGAGAAGGTGAAGATCGATCTCGTC
ACCGGGATCGTGACACGTCATCCGATCTCCGCGAGGAACCTCGATTTCGC
CGTGATCAATCCGGCGTTCGTTGGGAGACGGAGCCGGTACGTGTACGCGG
CGATCGGAGATCCGATGCCGAAGATCTCCGGGGTGGTGAAGCTCGACGTG
ACTAGAGGAGATAGGGACGATTGCACGGTGGCGCGTAGGATGTACGGTCC
AGGTTGTTACGGAGGAGAACCGTTTTTCGTAGCTAGGGATCCTGGTGATC
CGGAGGCGGAGGAGGATGACGGTTACGTGGTGACGTATGTGCATGATGAG
GTGGCGGGAGAGTCGAAGTTTCTTGTGATGGACGCGAAGTCGCCGGAGCT
TGAGGTCGTAGCCGCTGTGAGGTTGCCGCGAAGGGTTCCGTACGGATTCC
ATGGACTATTTGTCAAGGAGAGTGACCTTAATAAGCTTTAGTGATAGAAT
CTATAGGTAATTAAACAAAGGATTAAGTTCTTAATCACGTTCCGTATAAT
GGAAACAAAACATATATGGTGTTGTTGCATTTTAAACATTATAGTATACA
TAGTTTGGTAGTTGTCGAATGTATATAATAATATAAGCCTGTTAATAAAA
AACGTATTATTCATTTC

Coding sequence (CDS) from alignment at A01_BnaDARv10:5585427..5587393+

>A01p11130.1_BnaDARv10-RA ID=A01p11130.1_BnaDARv10-RA|Name=A01p11130.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=1791bp|location=Sequence derived from alignment at A01_BnaDARv10:5585427..5587393+ (Brassica napus)
ATGGACTCTCTTTCTTCCTCTTCCTTCATCTCCACCTTCTCTCCTCCATC
CTCTCTTCTTCTTCCCCGCCCTTCTTCCTCTCGCCGTCTCCTCCGTATCA
ACTCCGCCGTCGTCGAAGAACGATCGCCCATCACTAACCCAAGCCAAAAC
AATGACCTTCCTCCGAGCAAACCTAAGAAACTCTACACTCATCGAACCAA
CCACACCGCCGTTTCATCTCCCGCGAAACCCCGACCACAACCACAAACGT
CTCTAGCAACAGCTCTCTTCACCACCATGGAAGAAGTCATCAACACGTTT
ATCGACCCACCGTCACGTCCTTCCGTAGATCCAAAACACGTCCTCTCAGA
CAACTTCGCTCCTGTCCTCGACGAGCTTCCTCCCACTGAGTGCCAGATCA
TCCACGGCTCTCTTCCGCCGTCTCTCAACGGCGCTTACATCCGTAACGGC
CCTAACCCACAGTTTCTCCCACGTGGTCCCTACCATTTATTTGACGGTGA
CGGTATGCTTCACGCGATCCGCATCCGTGACGGTAAAGCCACGCTCTGCA
GCAGATACGTCAAGACTTACAAATACAACGTTGAGAAACAAACCGGAACT
CCGGTTATCCCTAACGTCTTTTCTGGATTTAACGGCGTACCGGCGTCAAT
GGCTCGCGGAGCTTTAACGGCGTTTAGAGTTTTAGCTGGACAGTTTAATC
CGATCAACGGCATTGGTTTAGCGAACACGAGCCTCGCTTTCTTCTGTAAC
CGTCTCTTCGCTTTAGGAGAATCCGATTTACCGTACGCCGTCCGATTAAC
GGAGAGCGGAGACATCGTGACGATCGGACGGCACGATTTCGACGGGAAGT
TAGCGATGAGCATGACAGCTCATCCGAAAACCGATCCCGAAACCGGAGAG
ACGTTCGCTTTCCGGTACGGTCCGGTTCCACCGTTTCTAACGTTTTTCCG
GTTCGACTCGACCGGGAATAAGCGAAAAGACGTTCCGGTTTTCTCCATGA
CGTCTCCCTCCTTCCTCCACGACTTCGCGATCACGAGCCGTTACGCGATC
TTCTCGGAGATTCAGATTCGGATGAGGATGGACTCGATGCTCGAAGGAGG
ATCTCCCGTCGGCGCCGATAACGGCAAAACGCCGAGGCTCGGAGTGATCC
CGCGCTACGCCGAAGGCGAATCGGAGATGAAATGGTTCGAGGTTCCTGGA
TTCAACATCATCCACGCCATCAACGCCTGGGACGAAGACGACGGTGACAC
CATCGTTCTCATCGCTCCCAACATTATGTCGATCGAGCACACGCTGGAGA
GGATGGAGCTCGTCCACGCCTTGGTGGAGAAGGTGAAGATCGATCTCGTC
ACCGGGATCGTGACACGTCATCCGATCTCCGCGAGGAACCTCGATTTCGC
CGTGATCAATCCGGCGTTCGTTGGGAGACGGAGCCGGTACGTGTACGCGG
CGATCGGAGATCCGATGCCGAAGATCTCCGGGGTGGTGAAGCTCGACGTG
ACTAGAGGAGATAGGGACGATTGCACGGTGGCGCGTAGGATGTACGGTCC
AGGTTGTTACGGAGGAGAACCGTTTTTCGTAGCTAGGGATCCTGGTGATC
CGGAGGCGGAGGAGGATGACGGTTACGTGGTGACGTATGTGCATGATGAG
GTGGCGGGAGAGTCGAAGTTTCTTGTGATGGACGCGAAGTCGCCGGAGCT
TGAGGTCGTAGCCGCTGTGAGGTTGCCGCGAAGGGTTCCGTACGGATTCC
ATGGACTATTTGTCAAGGAGAGTGACCTTAATAAGCTTTAG

Orthology

View orthology data for A01p11130.1_BnaDARv10-RA

Metabolic Model

View data from metabolic model for A01p11130.1_BnaDARv10-RA