A01p11070.1_BnaDARv10-RA (mRNA) Brassica napus

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	A01p11070.1_BnaDARv10-RA
Unique Name	A01p11070.1_BnaDARv10-RA
Type	mRNA
Organism	Brassica napus (cv. Darmor-bzh, rapeseed)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A01_BnaDARv10	contig	A01_BnaDARv10:5557676..5559051 - View in Apollo

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Darmor-bzh OGS10 v10	2020-07-22

Properties


Property Name	Value
Stop	1
Start	1
Model size	1376
Exons	1
Cds size	1137

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
A01p11070.1_BnaDARv10	A01p11070.1_BnaDARv10	Brassica napus	gene	A01_BnaDARv10 5557676..5559051 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1626340551.0598037-five_prime_UTR-A01_BnaDARv10:5557675..5557914	1626340551.0598037-five_prime_UTR-A01_BnaDARv10:5557675..5557914	Brassica napus	five_prime_UTR	A01_BnaDARv10 5557676..5557914 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
A01p11070.1_BnaDARv10_exon1	A01p11070.1_BnaDARv10_exon1	Brassica napus	exon	A01_BnaDARv10 5557676..5559051 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1626340551.071485-CDS-A01_BnaDARv10:5557914..5559051	1626340551.071485-CDS-A01_BnaDARv10:5557914..5559051	Brassica napus	CDS	A01_BnaDARv10 5557915..5559051 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
A01p11070.1_BnaDARv10-RA	A01p11070.1_BnaDARv10-PA	Brassica napus	polypeptide	A01_BnaDARv10 5557915..5559051 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at A01_BnaDARv10:5557676..5559051-
coding sequence from alignment at A01_BnaDARv10:5557676..5559051-

spliced messenger RNA

>A01p11070.1_BnaDARv10-RA ID=A01p11070.1_BnaDARv10-RA|Name=A01p11070.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1376bp|location=Sequence derived from alignment at A01_BnaDARv10:5557676..5559051- (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACAAGAAATAAAAAGACACAGAGATCTGGTTATGGCTCTAGCTAA
TAAGAAGCGTTTGTCTGAAATTGATAAGAAGCTCGCTATGATTGAGTCTA
CTTTTAAAATAAACTATGGCTATTGGCTTAAAGGAATGATCGATGATTCA
TCATCATCAGCAACTCCTGACAGTAAAGTAACGCGATCTAAGACGAGCCG
AGTGGAGACGAGACCTGACCTTCCGGAACAACCTATTCGTGGTTTTGTAA
ACGAGTCCTTGTTCTTGAAGAACTTCTTGCTGAAGGGAAAGGGATCCGAA
GAGTTCAAGACGCTAGCCATCGTGGGGAAGTTCGGAGTCGGGAAAACGAC
CTTGTGTCAGGATGTGTTCAACGACAAAGACGTGAAACAAGCTTATCTCC
CGAGGGTATGGGTGTCTATGTACAGCGGAGAAACTAAAGAAGATGAAGGA
GATCAAAAGGGAGCTGTGCTGAAGAGGATCTTGAGATCGCTTGGAGTTGA
AGATGAGGCGCTTGACAGCATCAGAACAGAAGCAGACGAAGAGAAGAGGA
AAAACGCTGAAGAAGGGAGAAGAGATGAAGAGACGGTTAAAGAGAAGGAG
CTCTTTAGGTTACTGAATGCTCTTAACTCGAATCTGTTTGGTAAGAGATA
TCTGATCGTGTTGGACGATGTCTGGGAGGATAACGAGTGGAGTCAGAGGC
TGGATGGTGAGGAGACACAACAGGAGAAAACGCATCTTTCTTGTGGGTTT
CCTAAAGGGTCTGGTGGGAGAGTGATTGTGACAAGCAGAGACGAGGGCCT
GGCCAAGAAGATAGTCGGAGAAGAAGAGAAAGTGCAGCGTCTGTTCCCGA
GATCAGACGTAGAGAGCGTGTGGGAGATCTACAAAGATGCATTTGGAGAG
CCCATGAAAGATGAAAATGGAGAAGTCGTGAAAGATGCAGCTGGAGAACC
GATGAAGGATGCCGTTGAAAAGCACGTGATAGGTGATGATGGTAGGCCAA
CAAAATGGGTAGTGAACCCGAGGTACCCAGGGAGATACAAAAAGGAGCTT
ATGGATAAGTCTGGTGGTGTTCCTTGGGCTGCTCAAATGCTGGCGAAGAT
TGAGCCTCTCAAAAATGATGAAGACAAGGACATGTAGACAAACTTGTAAA
GCAAGGATGTAATCTACTACGTATTTACTCTCTAACCTAAGGACACATTT
CAAGATTACTACTGTATTTCAAGTTTATTTTATTTTCCTACAAACTGTTA
AGTGTACTTGTAACTCGTAGAAGTGTAAACCTCTGCTGGTATTTGACAAT
AAACAATGTAATAAAGAGTTACAACACAGATGTCTGACAGTTATAAGATA
ATGTATAACGCGTCTCTAAGGCCATG

protein sequence of A01p11070.1_BnaDARv10-RA

>A01p11070.1_BnaDARv10-PA ID=A01p11070.1_BnaDARv10-PA|Name=A01p11070.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=379bp
MEQEIKRHRDLVMALANKKRLSEIDKKLAMIESTFKINYGYWLKGMIDDS
SSSATPDSKVTRSKTSRVETRPDLPEQPIRGFVNESLFLKNFLLKGKGSE
EFKTLAIVGKFGVGKTTLCQDVFNDKDVKQAYLPRVWVSMYSGETKEDEG
DQKGAVLKRILRSLGVEDEALDSIRTEADEEKRKNAEEGRRDEETVKEKE
LFRLLNALNSNLFGKRYLIVLDDVWEDNEWSQRLDGEETQQEKTHLSCGF
PKGSGGRVIVTSRDEGLAKKIVGEEEKVQRLFPRSDVESVWEIYKDAFGE
PMKDENGEVVKDAAGEPMKDAVEKHVIGDDGRPTKWVVNPRYPGRYKKEL
MDKSGGVPWAAQMLAKIEPLKNDEDKDM.

mRNA from alignment at A01_BnaDARv10:5557676..5559051-

Legend: exonpolypeptideCDSfive_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>A01p11070.1_BnaDARv10-RA ID=A01p11070.1_BnaDARv10-RA|Name=A01p11070.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1376bp|location=Sequence derived from alignment at A01_BnaDARv10:5557676..5559051- (Brassica napus)
ATGGAACAAGAAATAAAAAGACACAGAGATCTGGTTATGGCTCTAGCTAA
TAAGAAGCGTTTGTCTGAAATTGATAAGAAGCTCGCTATGATTGAGTCTA
CTTTTAAAATAAACTATGGCTATTGGCTTAAAGGAATGATCGATGATTCA
TCATCATCAGCAACTCCTGACAGTAAAGTAACGCGATCTAAGACGAGCCG
AGTGGAGACGAGACCTGACCTTCCGGAACAACCTATTCGTGGTTTTGTAA
ACGAGTCCTTGTTCTTGAAGAACTTCTTGCTGAAGGGAAAGGGATCCGAA
GAGTTCAAGACGCTAGCCATCGTGGGGAAGTTCGGAGTCGGGAAAACGAC
CTTGTGTCAGGATGTGTTCAACGACAAAGACGTGAAACAAGCTTATCTCC
CGAGGGTATGGGTGTCTATGTACAGCGGAGAAACTAAAGAAGATGAAGGA
GATCAAAAGGGAGCTGTGCTGAAGAGGATCTTGAGATCGCTTGGAGTTGA
AGATGAGGCGCTTGACAGCATCAGAACAGAAGCAGACGAAGAGAAGAGGA
AAAACGCTGAAGAAGGGAGAAGAGATGAAGAGACGGTTAAAGAGAAGGAG
CTCTTTAGGTTACTGAATGCTCTTAACTCGAATCTGTTTGGTAAGAGATA
TCTGATCGTGTTGGACGATGTCTGGGAGGATAACGAGTGGAGTCAGAGGC
TGGATGGTGAGGAGACACAACAGGAGAAAACGCATCTTTCTTGTGGGTTT
CCTAAAGGGTCTGGTGGGAGAGTGATTGTGACAAGCAGAGACGAGGGCCT
GGCCAAGAAGATAGTCGGAGAAGAAGAGAAAGTGCAGCGTCTGTTCCCGA
GATCAGACGTAGAGAGCGTGTGGGAGATCTACAAAGATGCATTTGGAGAG
CCCATGAAAGATGAAAATGGAGAAGTCGTGAAAGATGCAGCTGGAGAACC
GATGAAGGATGCCGTTGAAAAGCACGTGATAGGTGATGATGGTAGGCCAA
CAAAATGGGTAGTGAACCCGAGGTACCCAGGGAGATACAAAAAGGAGCTT
ATGGATAAGTCTGGTGGTGTTCCTTGGGCTGCTCAAATGCTGGCGAAGAT
TGAGCCTCTCAAAAATGATGAAGACAAGGACATGTAGACAAACTTGTAAA
GCAAGGATGTAATCTACTACGTATTTACTCTCTAACCTAAGGACACATTT
CAAGATTACTACTGTATTTCAAGTTTATTTTATTTTCCTACAAACTGTTA
AGTGTACTTGTAACTCGTAGAAGTGTAAACCTCTGCTGGTATTTGACAAT
AAACAATGTAATAAAGAGTTACAACACAGATGTCTGACAGTTATAAGATA
ATGTATAACGCGTCTCTAAGGCCATG

Coding sequence (CDS) from alignment at A01_BnaDARv10:5557676..5559051-

>A01p11070.1_BnaDARv10-RA ID=A01p11070.1_BnaDARv10-RA|Name=A01p11070.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=1137bp|location=Sequence derived from alignment at A01_BnaDARv10:5557676..5559051- (Brassica napus)
ATGGAACAAGAAATAAAAAGACACAGAGATCTGGTTATGGCTCTAGCTAA
TAAGAAGCGTTTGTCTGAAATTGATAAGAAGCTCGCTATGATTGAGTCTA
CTTTTAAAATAAACTATGGCTATTGGCTTAAAGGAATGATCGATGATTCA
TCATCATCAGCAACTCCTGACAGTAAAGTAACGCGATCTAAGACGAGCCG
AGTGGAGACGAGACCTGACCTTCCGGAACAACCTATTCGTGGTTTTGTAA
ACGAGTCCTTGTTCTTGAAGAACTTCTTGCTGAAGGGAAAGGGATCCGAA
GAGTTCAAGACGCTAGCCATCGTGGGGAAGTTCGGAGTCGGGAAAACGAC
CTTGTGTCAGGATGTGTTCAACGACAAAGACGTGAAACAAGCTTATCTCC
CGAGGGTATGGGTGTCTATGTACAGCGGAGAAACTAAAGAAGATGAAGGA
GATCAAAAGGGAGCTGTGCTGAAGAGGATCTTGAGATCGCTTGGAGTTGA
AGATGAGGCGCTTGACAGCATCAGAACAGAAGCAGACGAAGAGAAGAGGA
AAAACGCTGAAGAAGGGAGAAGAGATGAAGAGACGGTTAAAGAGAAGGAG
CTCTTTAGGTTACTGAATGCTCTTAACTCGAATCTGTTTGGTAAGAGATA
TCTGATCGTGTTGGACGATGTCTGGGAGGATAACGAGTGGAGTCAGAGGC
TGGATGGTGAGGAGACACAACAGGAGAAAACGCATCTTTCTTGTGGGTTT
CCTAAAGGGTCTGGTGGGAGAGTGATTGTGACAAGCAGAGACGAGGGCCT
GGCCAAGAAGATAGTCGGAGAAGAAGAGAAAGTGCAGCGTCTGTTCCCGA
GATCAGACGTAGAGAGCGTGTGGGAGATCTACAAAGATGCATTTGGAGAG
CCCATGAAAGATGAAAATGGAGAAGTCGTGAAAGATGCAGCTGGAGAACC
GATGAAGGATGCCGTTGAAAAGCACGTGATAGGTGATGATGGTAGGCCAA
CAAAATGGGTAGTGAACCCGAGGTACCCAGGGAGATACAAAAAGGAGCTT
ATGGATAAGTCTGGTGGTGTTCCTTGGGCTGCTCAAATGCTGGCGAAGAT
TGAGCCTCTCAAAAATGATGAAGACAAGGACATGTAG

Orthology

View orthology data for A01p11070.1_BnaDARv10-RA

Metabolic Model

View data from metabolic model for A01p11070.1_BnaDARv10-RA