A01p11070.1_BnaDARv10-RA (mRNA) Brassica napus

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameA01p11070.1_BnaDARv10-RA
Unique NameA01p11070.1_BnaDARv10-RA
TypemRNA
OrganismBrassica napus (cv. Darmor-bzh, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01_BnaDARv10contigA01_BnaDARv10:5557676..5559051 -    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Darmor-bzh OGS10 v102020-07-22
Properties
Property NameValue
Stop1
Start1
Model size1376
Exons1
Cds size1137
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
A01p11070.1_BnaDARv10A01p11070.1_BnaDARv10Brassica napusgeneA01_BnaDARv10 5557676..5559051 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340551.0598037-five_prime_UTR-A01_BnaDARv10:5557675..55579141626340551.0598037-five_prime_UTR-A01_BnaDARv10:5557675..5557914Brassica napusfive_prime_UTRA01_BnaDARv10 5557676..5557914 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p11070.1_BnaDARv10_exon1A01p11070.1_BnaDARv10_exon1Brassica napusexonA01_BnaDARv10 5557676..5559051 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340551.071485-CDS-A01_BnaDARv10:5557914..55590511626340551.071485-CDS-A01_BnaDARv10:5557914..5559051Brassica napusCDSA01_BnaDARv10 5557915..5559051 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p11070.1_BnaDARv10-RAA01p11070.1_BnaDARv10-PABrassica napuspolypeptideA01_BnaDARv10 5557915..5559051 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>A01p11070.1_BnaDARv10-RA ID=A01p11070.1_BnaDARv10-RA|Name=A01p11070.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1376bp|location=Sequence derived from alignment at A01_BnaDARv10:5557676..5559051- (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACAAGAAATAAAAAGACACAGAGATCTGGTTATGGCTCTAGCTAA
TAAGAAGCGTTTGTCTGAAATTGATAAGAAGCTCGCTATGATTGAGTCTA
CTTTTAAAATAAACTATGGCTATTGGCTTAAAGGAATGATCGATGATTCA
TCATCATCAGCAACTCCTGACAGTAAAGTAACGCGATCTAAGACGAGCCG
AGTGGAGACGAGACCTGACCTTCCGGAACAACCTATTCGTGGTTTTGTAA
ACGAGTCCTTGTTCTTGAAGAACTTCTTGCTGAAGGGAAAGGGATCCGAA
GAGTTCAAGACGCTAGCCATCGTGGGGAAGTTCGGAGTCGGGAAAACGAC
CTTGTGTCAGGATGTGTTCAACGACAAAGACGTGAAACAAGCTTATCTCC
CGAGGGTATGGGTGTCTATGTACAGCGGAGAAACTAAAGAAGATGAAGGA
GATCAAAAGGGAGCTGTGCTGAAGAGGATCTTGAGATCGCTTGGAGTTGA
AGATGAGGCGCTTGACAGCATCAGAACAGAAGCAGACGAAGAGAAGAGGA
AAAACGCTGAAGAAGGGAGAAGAGATGAAGAGACGGTTAAAGAGAAGGAG
CTCTTTAGGTTACTGAATGCTCTTAACTCGAATCTGTTTGGTAAGAGATA
TCTGATCGTGTTGGACGATGTCTGGGAGGATAACGAGTGGAGTCAGAGGC
TGGATGGTGAGGAGACACAACAGGAGAAAACGCATCTTTCTTGTGGGTTT
CCTAAAGGGTCTGGTGGGAGAGTGATTGTGACAAGCAGAGACGAGGGCCT
GGCCAAGAAGATAGTCGGAGAAGAAGAGAAAGTGCAGCGTCTGTTCCCGA
GATCAGACGTAGAGAGCGTGTGGGAGATCTACAAAGATGCATTTGGAGAG
CCCATGAAAGATGAAAATGGAGAAGTCGTGAAAGATGCAGCTGGAGAACC
GATGAAGGATGCCGTTGAAAAGCACGTGATAGGTGATGATGGTAGGCCAA
CAAAATGGGTAGTGAACCCGAGGTACCCAGGGAGATACAAAAAGGAGCTT
ATGGATAAGTCTGGTGGTGTTCCTTGGGCTGCTCAAATGCTGGCGAAGAT
TGAGCCTCTCAAAAATGATGAAGACAAGGACATGTAGACAAACTTGTAAA
GCAAGGATGTAATCTACTACGTATTTACTCTCTAACCTAAGGACACATTT
CAAGATTACTACTGTATTTCAAGTTTATTTTATTTTCCTACAAACTGTTA
AGTGTACTTGTAACTCGTAGAAGTGTAAACCTCTGCTGGTATTTGACAAT
AAACAATGTAATAAAGAGTTACAACACAGATGTCTGACAGTTATAAGATA
ATGTATAACGCGTCTCTAAGGCCATG
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protein sequence of A01p11070.1_BnaDARv10-RA

>A01p11070.1_BnaDARv10-PA ID=A01p11070.1_BnaDARv10-PA|Name=A01p11070.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=379bp
MEQEIKRHRDLVMALANKKRLSEIDKKLAMIESTFKINYGYWLKGMIDDS
SSSATPDSKVTRSKTSRVETRPDLPEQPIRGFVNESLFLKNFLLKGKGSE
EFKTLAIVGKFGVGKTTLCQDVFNDKDVKQAYLPRVWVSMYSGETKEDEG
DQKGAVLKRILRSLGVEDEALDSIRTEADEEKRKNAEEGRRDEETVKEKE
LFRLLNALNSNLFGKRYLIVLDDVWEDNEWSQRLDGEETQQEKTHLSCGF
PKGSGGRVIVTSRDEGLAKKIVGEEEKVQRLFPRSDVESVWEIYKDAFGE
PMKDENGEVVKDAAGEPMKDAVEKHVIGDDGRPTKWVVNPRYPGRYKKEL
MDKSGGVPWAAQMLAKIEPLKNDEDKDM.
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mRNA from alignment at A01_BnaDARv10:5557676..5559051-

Legend: exonpolypeptideCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>A01p11070.1_BnaDARv10-RA ID=A01p11070.1_BnaDARv10-RA|Name=A01p11070.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1376bp|location=Sequence derived from alignment at A01_BnaDARv10:5557676..5559051- (Brassica napus)
ATGGAACAAGAAATAAAAAGACACAGAGATCTGGTTATGGCTCTAGCTAA TAAGAAGCGTTTGTCTGAAATTGATAAGAAGCTCGCTATGATTGAGTCTA CTTTTAAAATAAACTATGGCTATTGGCTTAAAGGAATGATCGATGATTCA TCATCATCAGCAACTCCTGACAGTAAAGTAACGCGATCTAAGACGAGCCG AGTGGAGACGAGACCTGACCTTCCGGAACAACCTATTCGTGGTTTTGTAA ACGAGTCCTTGTTCTTGAAGAACTTCTTGCTGAAGGGAAAGGGATCCGAA GAGTTCAAGACGCTAGCCATCGTGGGGAAGTTCGGAGTCGGGAAAACGAC CTTGTGTCAGGATGTGTTCAACGACAAAGACGTGAAACAAGCTTATCTCC CGAGGGTATGGGTGTCTATGTACAGCGGAGAAACTAAAGAAGATGAAGGA GATCAAAAGGGAGCTGTGCTGAAGAGGATCTTGAGATCGCTTGGAGTTGA AGATGAGGCGCTTGACAGCATCAGAACAGAAGCAGACGAAGAGAAGAGGA AAAACGCTGAAGAAGGGAGAAGAGATGAAGAGACGGTTAAAGAGAAGGAG CTCTTTAGGTTACTGAATGCTCTTAACTCGAATCTGTTTGGTAAGAGATA TCTGATCGTGTTGGACGATGTCTGGGAGGATAACGAGTGGAGTCAGAGGC TGGATGGTGAGGAGACACAACAGGAGAAAACGCATCTTTCTTGTGGGTTT CCTAAAGGGTCTGGTGGGAGAGTGATTGTGACAAGCAGAGACGAGGGCCT GGCCAAGAAGATAGTCGGAGAAGAAGAGAAAGTGCAGCGTCTGTTCCCGA GATCAGACGTAGAGAGCGTGTGGGAGATCTACAAAGATGCATTTGGAGAG CCCATGAAAGATGAAAATGGAGAAGTCGTGAAAGATGCAGCTGGAGAACC GATGAAGGATGCCGTTGAAAAGCACGTGATAGGTGATGATGGTAGGCCAA CAAAATGGGTAGTGAACCCGAGGTACCCAGGGAGATACAAAAAGGAGCTT ATGGATAAGTCTGGTGGTGTTCCTTGGGCTGCTCAAATGCTGGCGAAGAT TGAGCCTCTCAAAAATGATGAAGACAAGGACATGTAGACAAACTTGTAAA GCAAGGATGTAATCTACTACGTATTTACTCTCTAACCTAAGGACACATTT CAAGATTACTACTGTATTTCAAGTTTATTTTATTTTCCTACAAACTGTTA AGTGTACTTGTAACTCGTAGAAGTGTAAACCTCTGCTGGTATTTGACAAT AAACAATGTAATAAAGAGTTACAACACAGATGTCTGACAGTTATAAGATA ATGTATAACGCGTCTCTAAGGCCATG
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Coding sequence (CDS) from alignment at A01_BnaDARv10:5557676..5559051-

>A01p11070.1_BnaDARv10-RA ID=A01p11070.1_BnaDARv10-RA|Name=A01p11070.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=1137bp|location=Sequence derived from alignment at A01_BnaDARv10:5557676..5559051- (Brassica napus)
ATGGAACAAGAAATAAAAAGACACAGAGATCTGGTTATGGCTCTAGCTAA
TAAGAAGCGTTTGTCTGAAATTGATAAGAAGCTCGCTATGATTGAGTCTA
CTTTTAAAATAAACTATGGCTATTGGCTTAAAGGAATGATCGATGATTCA
TCATCATCAGCAACTCCTGACAGTAAAGTAACGCGATCTAAGACGAGCCG
AGTGGAGACGAGACCTGACCTTCCGGAACAACCTATTCGTGGTTTTGTAA
ACGAGTCCTTGTTCTTGAAGAACTTCTTGCTGAAGGGAAAGGGATCCGAA
GAGTTCAAGACGCTAGCCATCGTGGGGAAGTTCGGAGTCGGGAAAACGAC
CTTGTGTCAGGATGTGTTCAACGACAAAGACGTGAAACAAGCTTATCTCC
CGAGGGTATGGGTGTCTATGTACAGCGGAGAAACTAAAGAAGATGAAGGA
GATCAAAAGGGAGCTGTGCTGAAGAGGATCTTGAGATCGCTTGGAGTTGA
AGATGAGGCGCTTGACAGCATCAGAACAGAAGCAGACGAAGAGAAGAGGA
AAAACGCTGAAGAAGGGAGAAGAGATGAAGAGACGGTTAAAGAGAAGGAG
CTCTTTAGGTTACTGAATGCTCTTAACTCGAATCTGTTTGGTAAGAGATA
TCTGATCGTGTTGGACGATGTCTGGGAGGATAACGAGTGGAGTCAGAGGC
TGGATGGTGAGGAGACACAACAGGAGAAAACGCATCTTTCTTGTGGGTTT
CCTAAAGGGTCTGGTGGGAGAGTGATTGTGACAAGCAGAGACGAGGGCCT
GGCCAAGAAGATAGTCGGAGAAGAAGAGAAAGTGCAGCGTCTGTTCCCGA
GATCAGACGTAGAGAGCGTGTGGGAGATCTACAAAGATGCATTTGGAGAG
CCCATGAAAGATGAAAATGGAGAAGTCGTGAAAGATGCAGCTGGAGAACC
GATGAAGGATGCCGTTGAAAAGCACGTGATAGGTGATGATGGTAGGCCAA
CAAAATGGGTAGTGAACCCGAGGTACCCAGGGAGATACAAAAAGGAGCTT
ATGGATAAGTCTGGTGGTGTTCCTTGGGCTGCTCAAATGCTGGCGAAGAT
TGAGCCTCTCAAAAATGATGAAGACAAGGACATGTAG
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