A01p10290.1_BnaDARv10-RA (mRNA) Brassica napus

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameA01p10290.1_BnaDARv10-RA
Unique NameA01p10290.1_BnaDARv10-RA
TypemRNA
OrganismBrassica napus (cv. Darmor-bzh, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01_BnaDARv10contigA01_BnaDARv10:5106835..5107633 -    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Darmor-bzh OGS10 v102020-07-22
Properties
Property NameValue
Stop1
Start1
Model size799
Exons1
Cds size342
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
A01p10290.1_BnaDARv10A01p10290.1_BnaDARv10Brassica napusgeneA01_BnaDARv10 5106835..5107633 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340543.3205009-five_prime_UTR-A01_BnaDARv10:5106834..51069901626340543.3205009-five_prime_UTR-A01_BnaDARv10:5106834..5106990Brassica napusfive_prime_UTRA01_BnaDARv10 5106835..5106990 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p10290.1_BnaDARv10_exon1A01p10290.1_BnaDARv10_exon1Brassica napusexonA01_BnaDARv10 5106835..5107633 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340543.331543-CDS-A01_BnaDARv10:5106990..51073321626340543.331543-CDS-A01_BnaDARv10:5106990..5107332Brassica napusCDSA01_BnaDARv10 5106991..5107332 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340543.3399725-three_prime_UTR-A01_BnaDARv10:5107332..51076331626340543.3399725-three_prime_UTR-A01_BnaDARv10:5107332..5107633Brassica napusthree_prime_UTRA01_BnaDARv10 5107333..5107633 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p10290.1_BnaDARv10-RAA01p10290.1_BnaDARv10-PABrassica napuspolypeptideA01_BnaDARv10 5106991..5107332 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>A01p10290.1_BnaDARv10-RA ID=A01p10290.1_BnaDARv10-RA|Name=A01p10290.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=799bp|location=Sequence derived from alignment at A01_BnaDARv10:5106835..5107633- (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.  
CCGACGATCGTCTCAGCTGCGATTGCGAATCGGAGCCATAGAGTATTCCT
AGGGTTCCACGAGCACTCGTCTTTGAAGCTCCGAAGACTACTACTACTAC
GTACATCATCTTTTCTCTCTCTCTGCTATTATCGTTCCTTGTTCGATTTT
GGTTTTGTTTCTATGTATCTCTTAGGCCTTGTTGCATCTCTAAGATTCAA
AGTTTGGTTATTTCCATCTCTAAGATTCAAAGTTTATAACTTTTGATTGT
TCTTCGTTTTGTGTGTAAAGCATACACAAGAACAAGAACCTGTCGTGAAA
AATGGAACAAATAGATGCAGGAGGAAGCACCACCGTCGCTGCGTCGACCT
CTGAAGACTCGAGTTTAGATCCGATAGCACGAGTGAGGAAGCTCTTGTTC
CGCCAGATGCTCGTTGGAATCAAAGACGGGAGATTCTTCCTTGGCAGTTT
CCACTGCATTGACAAACAAGGAAACATCATTCTCCAAGACACCGTTGAGT
ATCGCAGCATCAGAAGATCCTCTCCTTCCCCTACTGAACAGCGTTGTCTT
GGTATGATCCTCATCCCTGCCTCTTGCAGGACCTCTTGCCATGTTGATTG
CTCTATCGAGGAACAGCTTTCGTTGATTCAGCTCAAAGAGTAGAGCCTTG
ATGATAGAATGTCTCCGGAGCTTTGGTCTCTTCATTATGTCCTTGTATTG
TATGATGAATGATTTCACGTTACTTTGTGAAGATAAATGTATACATGCAT
TGGAAGTCTTTTGGAGTTTTATATTTACATTTAATAGAGAAGATGTTTG
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protein sequence of A01p10290.1_BnaDARv10-RA

>A01p10290.1_BnaDARv10-PA ID=A01p10290.1_BnaDARv10-PA|Name=A01p10290.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=114bp
MEQIDAGGSTTVAASTSEDSSLDPIARVRKLLFRQMLVGIKDGRFFLGSF
HCIDKQGNIILQDTVEYRSIRRSSPSPTEQRCLGMILIPASCRTSCHVDC
SIEEQLSLIQLKE.
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mRNA from alignment at A01_BnaDARv10:5106835..5107633-

Legend: exonthree_prime_UTRpolypeptideCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>A01p10290.1_BnaDARv10-RA ID=A01p10290.1_BnaDARv10-RA|Name=A01p10290.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=799bp|location=Sequence derived from alignment at A01_BnaDARv10:5106835..5107633- (Brassica napus)
CCGACGATCGTCTCAGCTGCGATTGCGAATCGGAGCCATAGAGTATTCCT
AGGGTTCCACGAGCACTCGTCTTTGAAGCTCCGAAGACTACTACTACTAC
GTACATCATCTTTTCTCTCTCTCTGCTATTATCGTTCCTTGTTCGATTTT
GGTTTTGTTTCTATGTATCTCTTAGGCCTTGTTGCATCTCTAAGATTCAA
AGTTTGGTTATTTCCATCTCTAAGATTCAAAGTTTATAACTTTTGATTGT
TCTTCGTTTTGTGTGTAAAGCATACACAAGAACAAGAACCTGTCGTGAAA
AATGGAACAAATAGATGCAGGAGGAAGCACCACCGTCGCTGCGTCGACCT
CTGAAGACTCGAGTTTAGATCCGATAGCACGAGTGAGGAAGCTCTTGTTC
CGCCAGATGCTCGTTGGAATCAAAGACGGGAGATTCTTCCTTGGCAGTTT
CCACTGCATTGACAAACAAGGAAACATCATTCTCCAAGACACCGTTGAGT
ATCGCAGCATCAGAAGATCCTCTCCTTCCCCTACTGAACAGCGTTGTCTT
GGTATGATCCTCATCCCTGCCTCTTGCAGGACCTCTTGCCATGTTGATTG
CTCTATCGAGGAACAGCTTTCGTTGATTCAGCTCAAAGAGTAGAGCCTTG
ATGATAGAATGTCTCCGGAGCTTTGGTCTCTTCATTATGTCCTTGTATTG
TATGATGAATGATTTCACGTTACTTTGTGAAGATAAATGTATACATGCAT
TGGAAGTCTTTTGGAGTTTTATATTTACATTTAATAGAGAAGATGTTTG
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Coding sequence (CDS) from alignment at A01_BnaDARv10:5106835..5107633-

>A01p10290.1_BnaDARv10-RA ID=A01p10290.1_BnaDARv10-RA|Name=A01p10290.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=342bp|location=Sequence derived from alignment at A01_BnaDARv10:5106835..5107633- (Brassica napus)
ATGGAACAAATAGATGCAGGAGGAAGCACCACCGTCGCTGCGTCGACCTC
TGAAGACTCGAGTTTAGATCCGATAGCACGAGTGAGGAAGCTCTTGTTCC
GCCAGATGCTCGTTGGAATCAAAGACGGGAGATTCTTCCTTGGCAGTTTC
CACTGCATTGACAAACAAGGAAACATCATTCTCCAAGACACCGTTGAGTA
TCGCAGCATCAGAAGATCCTCTCCTTCCCCTACTGAACAGCGTTGTCTTG
GTATGATCCTCATCCCTGCCTCTTGCAGGACCTCTTGCCATGTTGATTGC
TCTATCGAGGAACAGCTTTCGTTGATTCAGCTCAAAGAGTAG
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