A01p09530.1_BnaDARv10-RA (mRNA) Brassica napus

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameA01p09530.1_BnaDARv10-RA
Unique NameA01p09530.1_BnaDARv10-RA
TypemRNA
OrganismBrassica napus (cv. Darmor-bzh, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01_BnaDARv10contigA01_BnaDARv10:4646366..4646740 +    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Darmor-bzh OGS10 v102020-07-22
Properties
Property NameValue
Stop1
Start1
Model size375
Exons1
Cds size375
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
A01p09530.1_BnaDARv10A01p09530.1_BnaDARv10Brassica napusgeneA01_BnaDARv10 4646366..4646740 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340535.4153433-CDS-A01_BnaDARv10:4646365..46467401626340535.4153433-CDS-A01_BnaDARv10:4646365..4646740Brassica napusCDSA01_BnaDARv10 4646366..4646740 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p09530.1_BnaDARv10_exon1A01p09530.1_BnaDARv10_exon1Brassica napusexonA01_BnaDARv10 4646366..4646740 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p09530.1_BnaDARv10-RAA01p09530.1_BnaDARv10-PABrassica napuspolypeptideA01_BnaDARv10 4646366..4646740 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>A01p09530.1_BnaDARv10-RA ID=A01p09530.1_BnaDARv10-RA|Name=A01p09530.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=375bp|location=Sequence derived from alignment at A01_BnaDARv10:4646366..4646740+ (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGATGATGAGAGTAGCGTTTGCGATGACGTGCATGCTGTTTGCAAT
CACAACCGCCGACAAGGGTGACCGTCCCTGGCCCCGTGAGTGCCTAGAGG
TGGCGAACGTTATGGTGGAAGAATGCAAGCTGTTCTTCGTCGAACAGGAA
TCGCCTCCCACCGCCGAGTGCTGCGGCTGGTTCAGTAGCCGCCGTGAAAA
GGCTAAGGACAGGAGGCGGATTTGCCGGTGTATGGAGTTTCTGACCACAG
CCTTTGAAGCAATCAAGCCAAGCGTTTTGTCTCTCTCTGACCAGTGCCAT
TTCGGCGGGGGCTTCCCCATTTCTAAAAACCATGCATGCGCTTGTAAGCT
CCATTCCTTTGACCAAACTCTTTAA
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protein sequence of A01p09530.1_BnaDARv10-RA

>A01p09530.1_BnaDARv10-PA ID=A01p09530.1_BnaDARv10-PA|Name=A01p09530.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=125bp
MMMMRVAFAMTCMLFAITTADKGDRPWPRECLEVANVMVEECKLFFVEQE
SPPTAECCGWFSSRREKAKDRRRICRCMEFLTTAFEAIKPSVLSLSDQCH
FGGGFPISKNHACACKLHSFDQTL.
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mRNA from alignment at A01_BnaDARv10:4646366..4646740+

Legend: CDSpolypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>A01p09530.1_BnaDARv10-RA ID=A01p09530.1_BnaDARv10-RA|Name=A01p09530.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=375bp|location=Sequence derived from alignment at A01_BnaDARv10:4646366..4646740+ (Brassica napus)
ATGATGATGATGAGAGTAGCGTTTGCGATGACGTGCATGCTGTTTGCAAT
CACAACCGCCGACAAGGGTGACCGTCCCTGGCCCCGTGAGTGCCTAGAGG
TGGCGAACGTTATGGTGGAAGAATGCAAGCTGTTCTTCGTCGAACAGGAA
TCGCCTCCCACCGCCGAGTGCTGCGGCTGGTTCAGTAGCCGCCGTGAAAA
GGCTAAGGACAGGAGGCGGATTTGCCGGTGTATGGAGTTTCTGACCACAG
CCTTTGAAGCAATCAAGCCAAGCGTTTTGTCTCTCTCTGACCAGTGCCAT
TTCGGCGGGGGCTTCCCCATTTCTAAAAACCATGCATGCGCTTGTAAGCT
CCATTCCTTTGACCAAACTCTTTAA
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Coding sequence (CDS) from alignment at A01_BnaDARv10:4646366..4646740+

>A01p09530.1_BnaDARv10-RA ID=A01p09530.1_BnaDARv10-RA|Name=A01p09530.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=375bp|location=Sequence derived from alignment at A01_BnaDARv10:4646366..4646740+ (Brassica napus)
ATGATGATGATGAGAGTAGCGTTTGCGATGACGTGCATGCTGTTTGCAAT
CACAACCGCCGACAAGGGTGACCGTCCCTGGCCCCGTGAGTGCCTAGAGG
TGGCGAACGTTATGGTGGAAGAATGCAAGCTGTTCTTCGTCGAACAGGAA
TCGCCTCCCACCGCCGAGTGCTGCGGCTGGTTCAGTAGCCGCCGTGAAAA
GGCTAAGGACAGGAGGCGGATTTGCCGGTGTATGGAGTTTCTGACCACAG
CCTTTGAAGCAATCAAGCCAAGCGTTTTGTCTCTCTCTGACCAGTGCCAT
TTCGGCGGGGGCTTCCCCATTTCTAAAAACCATGCATGCGCTTGTAAGCT
CCATTCCTTTGACCAAACTCTTTAA
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