A01p04200.1_BnaDARv10-RA (mRNA) Brassica napus

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameA01p04200.1_BnaDARv10-RA
Unique NameA01p04200.1_BnaDARv10-RA
TypemRNA
OrganismBrassica napus (cv. Darmor-bzh, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01_BnaDARv10contigA01_BnaDARv10:1944822..1946672 +    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Darmor-bzh OGS10 v102020-07-22
Properties
Property NameValue
Stop1
Start1
Model size1114
Exons5
Cds size1074
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
A01p04200.1_BnaDARv10A01p04200.1_BnaDARv10Brassica napusgeneA01_BnaDARv10 1944822..1946672 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p04200.1_BnaDARv10-RAA01p04200.1_BnaDARv10-PABrassica napuspolypeptideA01_BnaDARv10 1944862..1946672 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340473.7279575-five_prime_UTR-A01_BnaDARv10:1944821..19448611626340473.7279575-five_prime_UTR-A01_BnaDARv10:1944821..1944861Brassica napusfive_prime_UTRA01_BnaDARv10 1944822..1944861 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p04200.1_BnaDARv10_exon1A01p04200.1_BnaDARv10_exon1Brassica napusexonA01_BnaDARv10 1944822..1944950 +
A01p04200.1_BnaDARv10_exon2A01p04200.1_BnaDARv10_exon2Brassica napusexonA01_BnaDARv10 1945038..1945151 +
A01p04200.1_BnaDARv10_exon3A01p04200.1_BnaDARv10_exon3Brassica napusexonA01_BnaDARv10 1945236..1945463 +
A01p04200.1_BnaDARv10_exon4A01p04200.1_BnaDARv10_exon4Brassica napusexonA01_BnaDARv10 1945930..1946373 +
A01p04200.1_BnaDARv10_exon5A01p04200.1_BnaDARv10_exon5Brassica napusexonA01_BnaDARv10 1946474..1946672 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340473.7372546-CDS-A01_BnaDARv10:1944861..19449501626340473.7372546-CDS-A01_BnaDARv10:1944861..1944950Brassica napusCDSA01_BnaDARv10 1944862..1944950 +
1626340473.7451575-CDS-A01_BnaDARv10:1945037..19451511626340473.7451575-CDS-A01_BnaDARv10:1945037..1945151Brassica napusCDSA01_BnaDARv10 1945038..1945151 +
1626340473.7524154-CDS-A01_BnaDARv10:1945235..19454631626340473.7524154-CDS-A01_BnaDARv10:1945235..1945463Brassica napusCDSA01_BnaDARv10 1945236..1945463 +
1626340473.7601562-CDS-A01_BnaDARv10:1945929..19463731626340473.7601562-CDS-A01_BnaDARv10:1945929..1946373Brassica napusCDSA01_BnaDARv10 1945930..1946373 +
1626340473.7675116-CDS-A01_BnaDARv10:1946473..19466721626340473.7675116-CDS-A01_BnaDARv10:1946473..1946672Brassica napusCDSA01_BnaDARv10 1946474..1946672 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>A01p04200.1_BnaDARv10-RA ID=A01p04200.1_BnaDARv10-RA|Name=A01p04200.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1114bp|location=Sequence derived from alignment at A01_BnaDARv10:1944822..1946672+ (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.  
AAGACCAAGAAGCATTAGAAACAGAGAAAGATAATCAAGAATGGGGAGAA
TGGAGGTGGAGAGGAAAACAATAGGCTGGGCTGCGAGAGACCCATCTGGG
ATACTCTCTCCTTACACTTACACTCTCAGGGAGACAGGACCAGAGGATGT
ACACATAAGAATCATATGCTGTGGAATCTGCCACACCGATCTCCATCACA
CTAAAAACGATCTCGGCATGTCTAACTACCCCATGGTTCCTGGGCACGAG
GTTGTAGGGGAAGTAGTAGAGGTGGGATCAGGTGTGAGTAAGTTCACCGT
AGGGGATATAGTTGGAGTTGGTTGTCTCGTTGGATGTTGCGGTGGTTGTA
GCCCCTGCGAGAGGGATCTCGAACAGTATTGTCCCAAGAAAATATGGAGT
TACAACGATGTTTACATCGATGGTCAGCCTACACAAGGTGGCTTTGCTAA
AGCCACTGTGGTTCACCAAAAGTTTGTGGTGAAGATTCCAGAAGGAATGG
CGGTTGAGCAGGCAGCCCCGCTACTGTGCGCCGGTGTGACGGTGTACAGT
CCACTGAGCCACTTTGGGCTGAAGAAACCAGGTCTAAGGGGAGGCATACT
AGGGTTAGGTGGAGTTGGTCACATGGGTGTGAAATTCGCCAAAGCAATGG
GGCACCATGTGACTGTCATAAGCTCATCAAACAAGAAGAGAGAAGAGGCT
TTGCAAGATCTTGGAGCCGATGATTACGTGATCGGATCCGACCAGTCGAA
GATGAACGAACTTGCTGATTCAATGGATTACATAATAGACACGGTCCCTG
TTCATCATGCACTTGAGCCTTACTTGTCTCTGCTTAGGCTTGATGGGAAA
CTCATACTCATGGGAGTCATCAACAATCCGTTGCAGTTTCTCAGTCCTAT
GGTTATGATTGGTGAGAAAATGATAACTGGGAGCTTCATAGGGAGCATGA
AGGACACTGAGGAGATGCTTGAGTTCTGGAAAGAAAAGGGTTTAAGTTCT
ATCATCGAAGTTGTGAAAATGGACTATGTAAACACTGCGCTCGAGAGACT
CGAGAAGAACGATGTGCGTTATAGGTTCGTGGTTGATGTCGAAGGAAGCA
AACTCGAGGCTTGA
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protein sequence of A01p04200.1_BnaDARv10-RA

>A01p04200.1_BnaDARv10-PA ID=A01p04200.1_BnaDARv10-PA|Name=A01p04200.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=358bp
MGRMEVERKTIGWAARDPSGILSPYTYTLRETGPEDVHIRIICCGICHTD
LHHTKNDLGMSNYPMVPGHEVVGEVVEVGSGVSKFTVGDIVGVGCLVGCC
GGCSPCERDLEQYCPKKIWSYNDVYIDGQPTQGGFAKATVVHQKFVVKIP
EGMAVEQAAPLLCAGVTVYSPLSHFGLKKPGLRGGILGLGGVGHMGVKFA
KAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQSKMNELADSMDYIID
TVPVHHALEPYLSLLRLDGKLILMGVINNPLQFLSPMVMIGEKMITGSFI
GSMKDTEEMLEFWKEKGLSSIIEVVKMDYVNTALERLEKNDVRYRFVVDV
EGSKLEA.
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mRNA from alignment at A01_BnaDARv10:1944822..1946672+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>A01p04200.1_BnaDARv10-RA ID=A01p04200.1_BnaDARv10-RA|Name=A01p04200.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1851bp|location=Sequence derived from alignment at A01_BnaDARv10:1944822..1946672+ (Brassica napus)
AAGACCAAGAAGCATTAGAAACAGAGAAAGATAATCAAGAATGGGGAGAA
TGGAGGTGGAGAGGAAAACAATAGGCTGGGCTGCGAGAGACCCATCTGGG
ATACTCTCTCCTTACACTTACACTCTCAGGTTTATATTCTCTTCTTTTGA
TCTTTGAATCTTTATGTGTTATCAGTTTCATCATTTGGGTTTGAATTTGA
ACGTATATTCTTACAGGGAGACAGGACCAGAGGATGTACACATAAGAATC
ATATGCTGTGGAATCTGCCACACCGATCTCCATCACACTAAAAACGATCT
CGGCATGTCTAACTACCCCATGGTTCCTGGGTATTTCTTCTTCTTTCTTC
TCCTTAGATATATAGCCAAATAAATATATAATAGAATCTTAAAACTCATG
TTGATGCTCTCTAGGCACGAGGTTGTAGGGGAAGTAGTAGAGGTGGGATC
AGGTGTGAGTAAGTTCACCGTAGGGGATATAGTTGGAGTTGGTTGTCTCG
TTGGATGTTGCGGTGGTTGTAGCCCCTGCGAGAGGGATCTCGAACAGTAT
TGTCCCAAGAAAATATGGAGTTACAACGATGTTTACATCGATGGTCAGCC
TACACAAGGTGGCTTTGCTAAAGCCACTGTGGTTCACCAAAAGTAAACTT
ATTTCCTTCAAAAAGAACTTTATGATATTCTCCATACTACATAACTAATG
ATCTTTAATATAGGTTTTGTTAGATTTTTGGTAATTGCTTTTGATTGTTC
AAACTGAAATCAAATTTTTTTTATGGTTTTCTATACTACAGAACTCATGA
TCTTTAGTCTTGGTTTTCATATACAGTCTAGTAATAAAGATTTTTAAAAA
TAATTAATAAATGTTTTGTTTAAAATACAAACGAAGGTCTTCCAAATTAA
AACTAATTGGCTGTAAATGGATTGATCCAAGTCACTTATTTATATATATA
TATATATTTATAATGTGTGATATCTCCAGCATACTCTATGCGTATGAACT
TGAATATTTTTAAATAACAAACGATTTTCAAACAGGATCTTTAGTTTTTG
GTTTCTTGTGCAACAACTTAGGGTATGTATGGCTAAAGGTTGGTCTAATT
GTGTTCAGGTTTGTGGTGAAGATTCCAGAAGGAATGGCGGTTGAGCAGGC
AGCCCCGCTACTGTGCGCCGGTGTGACGGTGTACAGTCCACTGAGCCACT
TTGGGCTGAAGAAACCAGGTCTAAGGGGAGGCATACTAGGGTTAGGTGGA
GTTGGTCACATGGGTGTGAAATTCGCCAAAGCAATGGGGCACCATGTGAC
TGTCATAAGCTCATCAAACAAGAAGAGAGAAGAGGCTTTGCAAGATCTTG
GAGCCGATGATTACGTGATCGGATCCGACCAGTCGAAGATGAACGAACTT
GCTGATTCAATGGATTACATAATAGACACGGTCCCTGTTCATCATGCACT
TGAGCCTTACTTGTCTCTGCTTAGGCTTGATGGGAAACTCATACTCATGG
GAGTCATCAACAATCCGTTGCAGTTTCTCAGTCCTATGGTTATGATTGGT
GAGTCAATGATAAAAAAAACATTAATTAGTTGAATCATCATTAATGGTTG
TGATATTAGAGGAATATTAATTTGGGGTATGATGATGATTTTAATTAGGG
AGGAAAATGATAACTGGGAGCTTCATAGGGAGCATGAAGGACACTGAGGA
GATGCTTGAGTTCTGGAAAGAAAAGGGTTTAAGTTCTATCATCGAAGTTG
TGAAAATGGACTATGTAAACACTGCGCTCGAGAGACTCGAGAAGAACGAT
GTGCGTTATAGGTTCGTGGTTGATGTCGAAGGAAGCAAACTCGAGGCTTG
A
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Coding sequence (CDS) from alignment at A01_BnaDARv10:1944822..1946672+

>A01p04200.1_BnaDARv10-RA ID=A01p04200.1_BnaDARv10-RA|Name=A01p04200.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=1074bp|location=Sequence derived from alignment at A01_BnaDARv10:1944822..1946672+ (Brassica napus)
ATGGGGAGAATGGAGGTGGAGAGGAAAACAATAGGCTGGGCTGCGAGAGA
CCCATCTGGGATACTCTCTCCTTACACTTACACTCTCAGGGAGACAGGAC
CAGAGGATGTACACATAAGAATCATATGCTGTGGAATCTGCCACACCGAT
CTCCATCACACTAAAAACGATCTCGGCATGTCTAACTACCCCATGGTTCC
TGGGCACGAGGTTGTAGGGGAAGTAGTAGAGGTGGGATCAGGTGTGAGTA
AGTTCACCGTAGGGGATATAGTTGGAGTTGGTTGTCTCGTTGGATGTTGC
GGTGGTTGTAGCCCCTGCGAGAGGGATCTCGAACAGTATTGTCCCAAGAA
AATATGGAGTTACAACGATGTTTACATCGATGGTCAGCCTACACAAGGTG
GCTTTGCTAAAGCCACTGTGGTTCACCAAAAGTTTGTGGTGAAGATTCCA
GAAGGAATGGCGGTTGAGCAGGCAGCCCCGCTACTGTGCGCCGGTGTGAC
GGTGTACAGTCCACTGAGCCACTTTGGGCTGAAGAAACCAGGTCTAAGGG
GAGGCATACTAGGGTTAGGTGGAGTTGGTCACATGGGTGTGAAATTCGCC
AAAGCAATGGGGCACCATGTGACTGTCATAAGCTCATCAAACAAGAAGAG
AGAAGAGGCTTTGCAAGATCTTGGAGCCGATGATTACGTGATCGGATCCG
ACCAGTCGAAGATGAACGAACTTGCTGATTCAATGGATTACATAATAGAC
ACGGTCCCTGTTCATCATGCACTTGAGCCTTACTTGTCTCTGCTTAGGCT
TGATGGGAAACTCATACTCATGGGAGTCATCAACAATCCGTTGCAGTTTC
TCAGTCCTATGGTTATGATTGGTGAGAAAATGATAACTGGGAGCTTCATA
GGGAGCATGAAGGACACTGAGGAGATGCTTGAGTTCTGGAAAGAAAAGGG
TTTAAGTTCTATCATCGAAGTTGTGAAAATGGACTATGTAAACACTGCGC
TCGAGAGACTCGAGAAGAACGATGTGCGTTATAGGTTCGTGGTTGATGTC
GAAGGAAGCAAACTCGAGGCTTGA
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