A01p03170.1_BnaDARv10-RA (mRNA) Brassica napus

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameA01p03170.1_BnaDARv10-RA
Unique NameA01p03170.1_BnaDARv10-RA
TypemRNA
OrganismBrassica napus (cv. Darmor-bzh, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01_BnaDARv10contigA01_BnaDARv10:1467900..1469229 -    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Darmor-bzh OGS10 v102020-07-22
Properties
Property NameValue
Stop1
Start1
Model size1330
Exons1
Cds size909
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
A01p03170.1_BnaDARv10A01p03170.1_BnaDARv10Brassica napusgeneA01_BnaDARv10 1467900..1469229 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340462.1103516-five_prime_UTR-A01_BnaDARv10:1467899..14680371626340462.1103516-five_prime_UTR-A01_BnaDARv10:1467899..1468037Brassica napusfive_prime_UTRA01_BnaDARv10 1467900..1468037 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p03170.1_BnaDARv10_exon1A01p03170.1_BnaDARv10_exon1Brassica napusexonA01_BnaDARv10 1467900..1469229 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340462.1180346-CDS-A01_BnaDARv10:1468037..14689461626340462.1180346-CDS-A01_BnaDARv10:1468037..1468946Brassica napusCDSA01_BnaDARv10 1468038..1468946 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340462.1246452-three_prime_UTR-A01_BnaDARv10:1468946..14692291626340462.1246452-three_prime_UTR-A01_BnaDARv10:1468946..1469229Brassica napusthree_prime_UTRA01_BnaDARv10 1468947..1469229 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p03170.1_BnaDARv10-RAA01p03170.1_BnaDARv10-PABrassica napuspolypeptideA01_BnaDARv10 1468038..1468946 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>A01p03170.1_BnaDARv10-RA ID=A01p03170.1_BnaDARv10-RA|Name=A01p03170.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1330bp|location=Sequence derived from alignment at A01_BnaDARv10:1467900..1469229- (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGATCTGGATCTGGTCCAGACAAATTTCACCGACCCTCTTTCACAT
ATGTAGACCCTCCCTTTCTCTCACTATTCAGTAGGGTTTTGTGTTCTCTT
GTCGTCTTCTTGTTTTGTCCGTAACATTAATGCAAGTTTAATCAATTCCA
GTATTTGAAACACTCTCAGTGACAAACCACTTCATCACTTACATTTTCTG
CCCATACTTTTGTCTTTGTCTCTCTCTATAAACAAAACAAAAAAATCCAA
AAACCAAACAGCAGTTTCTTGTTATTATTATCGATGTCTGGTTATATGCA
CCCTCTTCTAGGGCAAGAACTGCACCTACAGAGACCTGAAGATTCCAGAA
CCCCACCTGACCATAATAACATGGAACTCAACAGATCTGGAGCAGATGAA
GCAAAGGGAGAAACCACTCCCACCGGTGGAGGAGCAGCCAACTCAGCAAC
CGCCTCTGGCTCTTCCTCGGGACGCCGTCCACGTGGCCGTCCTGCTGGTT
CCAAAAACAAACCCAAACCTCCCACTATTATCACCAGAGATAGTCCTAAC
GTCCTTAGATCCCACGTTCTTGAAATTACCTCCGGCTCGGACATATCCGA
AGCTGTTTCTACTTACGCCACTCGTCGTGGCTGCGGAGTTTGCGTTTTAA
GCGCTACCGGTGCGGTCACTAACGTCACCATACGGCAACCGGCGGCTCCT
GCGGGTGGCGGTGTGATTACACTGCATGGTCGGTTTGAGATTTTGTCTTT
GACAGGGACTGCGCTTCCACCGCCAGCTCCACCGGGAGCGGGAGGTTTGA
CAGTGTATCTAGCCGGAGGTCAAGGACAGGTTGTCGGAGGGAATGTGGCT
GGTTCTTTGATAGCTTCGGGCCCAGTAGTCTTGATGGCTGCGTCCTTTGC
AAACGCAGTTTATGATAGGTTACCGATGGAAGAGGAAGAAACTCCACCGC
CAAGAACCACTGGAGTACAGCAGCCGCAGCCGGCGGCGTCTCAGTCGTCG
GAGGTTACGAGGAGTGAAGCCCAAATGGGTGAGTCGAACATGGGAGTTAG
AAACGGAGGAGTTGCTTTCTATAATCTAGGAATGAATATGAACAATTTTC
AATTCTCTGGAGGCGATATTTTTGGTCTAAGCGGCGGAGGTGGTGGAGGC
GGCGGAGGGGATGGTGGAGGTGTTACTAGACCTGCGTTTTAGCGTTTTCG
CGTTTTAGCTAGTGACACTTTCTTTTGCGTTTGAGTTTGATCTCAAAGTA
CTAGCTATGGCAGTTGCGAATACTAGCTAGGGTTTGTTTTTTTTTTCCCT
TCAAAATCTGGTGTGAAATGATAACGAAAG
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protein sequence of A01p03170.1_BnaDARv10-RA

>A01p03170.1_BnaDARv10-PA ID=A01p03170.1_BnaDARv10-PA|Name=A01p03170.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=303bp
MSGYMHPLLGQELHLQRPEDSRTPPDHNNMELNRSGADEAKGETTPTGGG
AANSATASGSSSGRRPRGRPAGSKNKPKPPTIITRDSPNVLRSHVLEITS
GSDISEAVSTYATRRGCGVCVLSATGAVTNVTIRQPAAPAGGGVITLHGR
FEILSLTGTALPPPAPPGAGGLTVYLAGGQGQVVGGNVAGSLIASGPVVL
MAASFANAVYDRLPMEEEETPPPRTTGVQQPQPAASQSSEVTRSEAQMGE
SNMGVRNGGVAFYNLGMNMNNFQFSGGDIFGLSGGGGGGGGGDGGGVTRP
AF.
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mRNA from alignment at A01_BnaDARv10:1467900..1469229-

Legend: exonthree_prime_UTRpolypeptideCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>A01p03170.1_BnaDARv10-RA ID=A01p03170.1_BnaDARv10-RA|Name=A01p03170.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1330bp|location=Sequence derived from alignment at A01_BnaDARv10:1467900..1469229- (Brassica napus)
ATGAAGATCTGGATCTGGTCCAGACAAATTTCACCGACCCTCTTTCACAT
ATGTAGACCCTCCCTTTCTCTCACTATTCAGTAGGGTTTTGTGTTCTCTT
GTCGTCTTCTTGTTTTGTCCGTAACATTAATGCAAGTTTAATCAATTCCA
GTATTTGAAACACTCTCAGTGACAAACCACTTCATCACTTACATTTTCTG
CCCATACTTTTGTCTTTGTCTCTCTCTATAAACAAAACAAAAAAATCCAA
AAACCAAACAGCAGTTTCTTGTTATTATTATCGATGTCTGGTTATATGCA
CCCTCTTCTAGGGCAAGAACTGCACCTACAGAGACCTGAAGATTCCAGAA
CCCCACCTGACCATAATAACATGGAACTCAACAGATCTGGAGCAGATGAA
GCAAAGGGAGAAACCACTCCCACCGGTGGAGGAGCAGCCAACTCAGCAAC
CGCCTCTGGCTCTTCCTCGGGACGCCGTCCACGTGGCCGTCCTGCTGGTT
CCAAAAACAAACCCAAACCTCCCACTATTATCACCAGAGATAGTCCTAAC
GTCCTTAGATCCCACGTTCTTGAAATTACCTCCGGCTCGGACATATCCGA
AGCTGTTTCTACTTACGCCACTCGTCGTGGCTGCGGAGTTTGCGTTTTAA
GCGCTACCGGTGCGGTCACTAACGTCACCATACGGCAACCGGCGGCTCCT
GCGGGTGGCGGTGTGATTACACTGCATGGTCGGTTTGAGATTTTGTCTTT
GACAGGGACTGCGCTTCCACCGCCAGCTCCACCGGGAGCGGGAGGTTTGA
CAGTGTATCTAGCCGGAGGTCAAGGACAGGTTGTCGGAGGGAATGTGGCT
GGTTCTTTGATAGCTTCGGGCCCAGTAGTCTTGATGGCTGCGTCCTTTGC
AAACGCAGTTTATGATAGGTTACCGATGGAAGAGGAAGAAACTCCACCGC
CAAGAACCACTGGAGTACAGCAGCCGCAGCCGGCGGCGTCTCAGTCGTCG
GAGGTTACGAGGAGTGAAGCCCAAATGGGTGAGTCGAACATGGGAGTTAG
AAACGGAGGAGTTGCTTTCTATAATCTAGGAATGAATATGAACAATTTTC
AATTCTCTGGAGGCGATATTTTTGGTCTAAGCGGCGGAGGTGGTGGAGGC
GGCGGAGGGGATGGTGGAGGTGTTACTAGACCTGCGTTTTAGCGTTTTCG
CGTTTTAGCTAGTGACACTTTCTTTTGCGTTTGAGTTTGATCTCAAAGTA
CTAGCTATGGCAGTTGCGAATACTAGCTAGGGTTTGTTTTTTTTTTCCCT
TCAAAATCTGGTGTGAAATGATAACGAAAG
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Coding sequence (CDS) from alignment at A01_BnaDARv10:1467900..1469229-

>A01p03170.1_BnaDARv10-RA ID=A01p03170.1_BnaDARv10-RA|Name=A01p03170.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=909bp|location=Sequence derived from alignment at A01_BnaDARv10:1467900..1469229- (Brassica napus)
ATGTCTGGTTATATGCACCCTCTTCTAGGGCAAGAACTGCACCTACAGAG
ACCTGAAGATTCCAGAACCCCACCTGACCATAATAACATGGAACTCAACA
GATCTGGAGCAGATGAAGCAAAGGGAGAAACCACTCCCACCGGTGGAGGA
GCAGCCAACTCAGCAACCGCCTCTGGCTCTTCCTCGGGACGCCGTCCACG
TGGCCGTCCTGCTGGTTCCAAAAACAAACCCAAACCTCCCACTATTATCA
CCAGAGATAGTCCTAACGTCCTTAGATCCCACGTTCTTGAAATTACCTCC
GGCTCGGACATATCCGAAGCTGTTTCTACTTACGCCACTCGTCGTGGCTG
CGGAGTTTGCGTTTTAAGCGCTACCGGTGCGGTCACTAACGTCACCATAC
GGCAACCGGCGGCTCCTGCGGGTGGCGGTGTGATTACACTGCATGGTCGG
TTTGAGATTTTGTCTTTGACAGGGACTGCGCTTCCACCGCCAGCTCCACC
GGGAGCGGGAGGTTTGACAGTGTATCTAGCCGGAGGTCAAGGACAGGTTG
TCGGAGGGAATGTGGCTGGTTCTTTGATAGCTTCGGGCCCAGTAGTCTTG
ATGGCTGCGTCCTTTGCAAACGCAGTTTATGATAGGTTACCGATGGAAGA
GGAAGAAACTCCACCGCCAAGAACCACTGGAGTACAGCAGCCGCAGCCGG
CGGCGTCTCAGTCGTCGGAGGTTACGAGGAGTGAAGCCCAAATGGGTGAG
TCGAACATGGGAGTTAGAAACGGAGGAGTTGCTTTCTATAATCTAGGAAT
GAATATGAACAATTTTCAATTCTCTGGAGGCGATATTTTTGGTCTAAGCG
GCGGAGGTGGTGGAGGCGGCGGAGGGGATGGTGGAGGTGTTACTAGACCT
GCGTTTTAG
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