A01p03070.1_BnaDARv10-RA (mRNA) Brassica napus

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	A01p03070.1_BnaDARv10-RA
Unique Name	A01p03070.1_BnaDARv10-RA
Type	mRNA
Organism	Brassica napus (cv. Darmor-bzh, rapeseed)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A01_BnaDARv10	contig	A01_BnaDARv10:1426993..1428565 - View in Apollo

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Darmor-bzh OGS10 v10	2020-07-22

Properties


Property Name	Value
Stop	1
Start	1
Model size	1573
Exons	1
Cds size	1404

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
A01p03070.1_BnaDARv10	A01p03070.1_BnaDARv10	Brassica napus	gene	A01_BnaDARv10 1426993..1428565 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1626340461.2233794-five_prime_UTR-A01_BnaDARv10:1426992..1427161	1626340461.2233794-five_prime_UTR-A01_BnaDARv10:1426992..1427161	Brassica napus	five_prime_UTR	A01_BnaDARv10 1426993..1427161 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
A01p03070.1_BnaDARv10_exon1	A01p03070.1_BnaDARv10_exon1	Brassica napus	exon	A01_BnaDARv10 1426993..1428565 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1626340461.230266-CDS-A01_BnaDARv10:1427161..1428565	1626340461.230266-CDS-A01_BnaDARv10:1427161..1428565	Brassica napus	CDS	A01_BnaDARv10 1427162..1428565 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
A01p03070.1_BnaDARv10-RA	A01p03070.1_BnaDARv10-PA	Brassica napus	polypeptide	A01_BnaDARv10 1427162..1428565 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at A01_BnaDARv10:1426993..1428565-
coding sequence from alignment at A01_BnaDARv10:1426993..1428565-

spliced messenger RNA

>A01p03070.1_BnaDARv10-RA ID=A01p03070.1_BnaDARv10-RA|Name=A01p03070.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1573bp|location=Sequence derived from alignment at A01_BnaDARv10:1426993..1428565- (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCTGCAAGAGATGCAACGGCACCGACTTCCAACGCGACGGCGCCAC
AGGGAACTCGTTCTGCTGCGGATGCGGAACGTTACAAGAGTACGACAACT
ACGAGGCCCAGCTCGGCGGCATTAGCGGACCCCAAGGCACCTACATCCGC
GTGGGCACCACCGGCACAGGCTCCACCCTCGCTTACAAAGACAAGAAGAT
CTTCGAAGCCGGTAACTTAATCGACGACGTCACAGAAAGGTTGCAGCTTG
GCGAGAAATCCGAAGAGGTTAAACGCATGATCGGTAAGATCACAGACGGA
GAGTTCGGGAAGGGGGAGTGGTTCTCGGTTTTGGTTGGTGCGTGTTGCTA
CGCGCTCGTGAGGAAGGAAGGGAGTGGAGTTTTGACGATGGATGAGATTG
TGAATGTCGTTGGGTGTGATTTGCATCAGCTTGGGAGTATGTGTAAGCGT
GTGGTGGAGTATTTAGGGATTGAGTTGGGAGAGTTTGATCTTGTTGGGTT
GTTTGTGAAGACGGCGAGTAGTTCGCCGAGGCTAAGTGGGGTTGATGGGA
AGAAGAAGGAGAAGGTGGTGAAGCAAGGAGGGTTTCTGATGAACTGTTCG
TTGAAGTGGTTTTTGTCTACTGGGAGGAGGCCTATGCCTTTGGTTGTTGC
GGTTTTGGCGTTTGTTTGTCAGGTTAATGGTGTGAAGTGTAGGATTGATG
ATTTGGCTAGAGATTGTGAGGTTTCGTTGTGTACTTGTAAGTTGCGGTAT
AAGGAGATGCTGGAGAGGCTTGTGAAGGTAGCGAAGGAGATTGGTTTGCC
TTGGGCGGGAGATGTTAACGTGAAGAATGTGGTGAAGCATTCAGGGGCTT
TGATTGGTTTGATGGAAGCCAAGTCCATGAGGAAGAAGAGGGGAGATGAG
TTGGTTATAAGTAGTGATGGGGTTTGTTTGAAGGAGATAGTAAAGGATTG
CTTAAGGCAAGAAGCTATGTATTGTTATGATGATGATGATGAAGGTGAGA
GGAGCTCGTTTCTTCAGATGGTTTCGTGTGATGATTGGTGGAAAGGGAAG
TCTAAGATGAGCCAGAGGCTTAAGTTAAAGGAAGTGTTGGAGAGAGATGT
GGGGCTTGATGATTTGCCTGTTTCTTTTATAAAGGGGTGTGATGCGGTGG
AGAGACGGAGAGAGAAGATTAAGGCGGCTAAGTTGAGGATTGGTTCGGTG
CAAGATCCTTGTGATGATGATGATAAAGTTAGTGGAAGAGAGTTGTCTTT
GGAGATTGGAGATGGAAAGAAGAAAAGGAAGAGAGGATGTGAGATTGATT
GGGAGGATTTGGTTATACAGACTTTGGTTTTACACAATGTGAAGGATGAA
GAGATAGAGAAAGGGCATTACAATGCTTTGCTTGGTTTGCATGTTTTCAA
CTAAGTTGAAATGAAACTGTAAAAGCTCAAGCTGTTTATTTTTTTTTCTT
ATTATAATTAAAGAGATAGGACATTGTTCTGAATGCAGAAAACATCAAAG
CGCACTCTCTAAGAGAGTTTAACATTCCATAAAAATTATATAATAAAAAA
AGTCTAAAACTGCTTTAAGACTG

protein sequence of A01p03070.1_BnaDARv10-RA

>A01p03070.1_BnaDARv10-PA ID=A01p03070.1_BnaDARv10-PA|Name=A01p03070.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=468bp
MPCKRCNGTDFQRDGATGNSFCCGCGTLQEYDNYEAQLGGISGPQGTYIR
VGTTGTGSTLAYKDKKIFEAGNLIDDVTERLQLGEKSEEVKRMIGKITDG
EFGKGEWFSVLVGACCYALVRKEGSGVLTMDEIVNVVGCDLHQLGSMCKR
VVEYLGIELGEFDLVGLFVKTASSSPRLSGVDGKKKEKVVKQGGFLMNCS
LKWFLSTGRRPMPLVVAVLAFVCQVNGVKCRIDDLARDCEVSLCTCKLRY
KEMLERLVKVAKEIGLPWAGDVNVKNVVKHSGALIGLMEAKSMRKKRGDE
LVISSDGVCLKEIVKDCLRQEAMYCYDDDDEGERSSFLQMVSCDDWWKGK
SKMSQRLKLKEVLERDVGLDDLPVSFIKGCDAVERRREKIKAAKLRIGSV
QDPCDDDDKVSGRELSLEIGDGKKKRKRGCEIDWEDLVIQTLVLHNVKDE
EIEKGHYNALLGLHVFN.

mRNA from alignment at A01_BnaDARv10:1426993..1428565-

Legend: exonpolypeptideCDSfive_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>A01p03070.1_BnaDARv10-RA ID=A01p03070.1_BnaDARv10-RA|Name=A01p03070.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1573bp|location=Sequence derived from alignment at A01_BnaDARv10:1426993..1428565- (Brassica napus)
ATGCCCTGCAAGAGATGCAACGGCACCGACTTCCAACGCGACGGCGCCAC
AGGGAACTCGTTCTGCTGCGGATGCGGAACGTTACAAGAGTACGACAACT
ACGAGGCCCAGCTCGGCGGCATTAGCGGACCCCAAGGCACCTACATCCGC
GTGGGCACCACCGGCACAGGCTCCACCCTCGCTTACAAAGACAAGAAGAT
CTTCGAAGCCGGTAACTTAATCGACGACGTCACAGAAAGGTTGCAGCTTG
GCGAGAAATCCGAAGAGGTTAAACGCATGATCGGTAAGATCACAGACGGA
GAGTTCGGGAAGGGGGAGTGGTTCTCGGTTTTGGTTGGTGCGTGTTGCTA
CGCGCTCGTGAGGAAGGAAGGGAGTGGAGTTTTGACGATGGATGAGATTG
TGAATGTCGTTGGGTGTGATTTGCATCAGCTTGGGAGTATGTGTAAGCGT
GTGGTGGAGTATTTAGGGATTGAGTTGGGAGAGTTTGATCTTGTTGGGTT
GTTTGTGAAGACGGCGAGTAGTTCGCCGAGGCTAAGTGGGGTTGATGGGA
AGAAGAAGGAGAAGGTGGTGAAGCAAGGAGGGTTTCTGATGAACTGTTCG
TTGAAGTGGTTTTTGTCTACTGGGAGGAGGCCTATGCCTTTGGTTGTTGC
GGTTTTGGCGTTTGTTTGTCAGGTTAATGGTGTGAAGTGTAGGATTGATG
ATTTGGCTAGAGATTGTGAGGTTTCGTTGTGTACTTGTAAGTTGCGGTAT
AAGGAGATGCTGGAGAGGCTTGTGAAGGTAGCGAAGGAGATTGGTTTGCC
TTGGGCGGGAGATGTTAACGTGAAGAATGTGGTGAAGCATTCAGGGGCTT
TGATTGGTTTGATGGAAGCCAAGTCCATGAGGAAGAAGAGGGGAGATGAG
TTGGTTATAAGTAGTGATGGGGTTTGTTTGAAGGAGATAGTAAAGGATTG
CTTAAGGCAAGAAGCTATGTATTGTTATGATGATGATGATGAAGGTGAGA
GGAGCTCGTTTCTTCAGATGGTTTCGTGTGATGATTGGTGGAAAGGGAAG
TCTAAGATGAGCCAGAGGCTTAAGTTAAAGGAAGTGTTGGAGAGAGATGT
GGGGCTTGATGATTTGCCTGTTTCTTTTATAAAGGGGTGTGATGCGGTGG
AGAGACGGAGAGAGAAGATTAAGGCGGCTAAGTTGAGGATTGGTTCGGTG
CAAGATCCTTGTGATGATGATGATAAAGTTAGTGGAAGAGAGTTGTCTTT
GGAGATTGGAGATGGAAAGAAGAAAAGGAAGAGAGGATGTGAGATTGATT
GGGAGGATTTGGTTATACAGACTTTGGTTTTACACAATGTGAAGGATGAA
GAGATAGAGAAAGGGCATTACAATGCTTTGCTTGGTTTGCATGTTTTCAA
CTAAGTTGAAATGAAACTGTAAAAGCTCAAGCTGTTTATTTTTTTTTCTT
ATTATAATTAAAGAGATAGGACATTGTTCTGAATGCAGAAAACATCAAAG
CGCACTCTCTAAGAGAGTTTAACATTCCATAAAAATTATATAATAAAAAA
AGTCTAAAACTGCTTTAAGACTG

Coding sequence (CDS) from alignment at A01_BnaDARv10:1426993..1428565-

>A01p03070.1_BnaDARv10-RA ID=A01p03070.1_BnaDARv10-RA|Name=A01p03070.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=1404bp|location=Sequence derived from alignment at A01_BnaDARv10:1426993..1428565- (Brassica napus)
ATGCCCTGCAAGAGATGCAACGGCACCGACTTCCAACGCGACGGCGCCAC
AGGGAACTCGTTCTGCTGCGGATGCGGAACGTTACAAGAGTACGACAACT
ACGAGGCCCAGCTCGGCGGCATTAGCGGACCCCAAGGCACCTACATCCGC
GTGGGCACCACCGGCACAGGCTCCACCCTCGCTTACAAAGACAAGAAGAT
CTTCGAAGCCGGTAACTTAATCGACGACGTCACAGAAAGGTTGCAGCTTG
GCGAGAAATCCGAAGAGGTTAAACGCATGATCGGTAAGATCACAGACGGA
GAGTTCGGGAAGGGGGAGTGGTTCTCGGTTTTGGTTGGTGCGTGTTGCTA
CGCGCTCGTGAGGAAGGAAGGGAGTGGAGTTTTGACGATGGATGAGATTG
TGAATGTCGTTGGGTGTGATTTGCATCAGCTTGGGAGTATGTGTAAGCGT
GTGGTGGAGTATTTAGGGATTGAGTTGGGAGAGTTTGATCTTGTTGGGTT
GTTTGTGAAGACGGCGAGTAGTTCGCCGAGGCTAAGTGGGGTTGATGGGA
AGAAGAAGGAGAAGGTGGTGAAGCAAGGAGGGTTTCTGATGAACTGTTCG
TTGAAGTGGTTTTTGTCTACTGGGAGGAGGCCTATGCCTTTGGTTGTTGC
GGTTTTGGCGTTTGTTTGTCAGGTTAATGGTGTGAAGTGTAGGATTGATG
ATTTGGCTAGAGATTGTGAGGTTTCGTTGTGTACTTGTAAGTTGCGGTAT
AAGGAGATGCTGGAGAGGCTTGTGAAGGTAGCGAAGGAGATTGGTTTGCC
TTGGGCGGGAGATGTTAACGTGAAGAATGTGGTGAAGCATTCAGGGGCTT
TGATTGGTTTGATGGAAGCCAAGTCCATGAGGAAGAAGAGGGGAGATGAG
TTGGTTATAAGTAGTGATGGGGTTTGTTTGAAGGAGATAGTAAAGGATTG
CTTAAGGCAAGAAGCTATGTATTGTTATGATGATGATGATGAAGGTGAGA
GGAGCTCGTTTCTTCAGATGGTTTCGTGTGATGATTGGTGGAAAGGGAAG
TCTAAGATGAGCCAGAGGCTTAAGTTAAAGGAAGTGTTGGAGAGAGATGT
GGGGCTTGATGATTTGCCTGTTTCTTTTATAAAGGGGTGTGATGCGGTGG
AGAGACGGAGAGAGAAGATTAAGGCGGCTAAGTTGAGGATTGGTTCGGTG
CAAGATCCTTGTGATGATGATGATAAAGTTAGTGGAAGAGAGTTGTCTTT
GGAGATTGGAGATGGAAAGAAGAAAAGGAAGAGAGGATGTGAGATTGATT
GGGAGGATTTGGTTATACAGACTTTGGTTTTACACAATGTGAAGGATGAA
GAGATAGAGAAAGGGCATTACAATGCTTTGCTTGGTTTGCATGTTTTCAA
CTAA

Orthology

View orthology data for A01p03070.1_BnaDARv10-RA

Metabolic Model

View data from metabolic model for A01p03070.1_BnaDARv10-RA