Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1448 |
| Exons | 5 |
| Cds size | 1008 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| A01p00350.1_BnaDARv10 | A01p00350.1_BnaDARv10 | Brassica napus | gene | A01_BnaDARv10 172862..174907 + |
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340431.94382-five_prime_UTR-A01_BnaDARv10:172861..173054 | 1626340431.94382-five_prime_UTR-A01_BnaDARv10:172861..173054 | Brassica napus | five_prime_UTR | A01_BnaDARv10 172862..173054 + |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| A01p00350.1_BnaDARv10_exon1 | A01p00350.1_BnaDARv10_exon1 | Brassica napus | exon | A01_BnaDARv10 172862..173533 + |
| A01p00350.1_BnaDARv10_exon2 | A01p00350.1_BnaDARv10_exon2 | Brassica napus | exon | A01_BnaDARv10 173627..174012 + |
| A01p00350.1_BnaDARv10_exon3 | A01p00350.1_BnaDARv10_exon3 | Brassica napus | exon | A01_BnaDARv10 174090..174251 + |
| A01p00350.1_BnaDARv10_exon4 | A01p00350.1_BnaDARv10_exon4 | Brassica napus | exon | A01_BnaDARv10 174351..174907 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340431.9525495-CDS-A01_BnaDARv10:173403..173533 | 1626340431.9525495-CDS-A01_BnaDARv10:173403..173533 | Brassica napus | CDS | A01_BnaDARv10 173404..173533 + |
| 1626340431.9605913-CDS-A01_BnaDARv10:173626..174012 | 1626340431.9605913-CDS-A01_BnaDARv10:173626..174012 | Brassica napus | CDS | A01_BnaDARv10 173627..174012 + |
| 1626340431.9678512-CDS-A01_BnaDARv10:174089..174251 | 1626340431.9678512-CDS-A01_BnaDARv10:174089..174251 | Brassica napus | CDS | A01_BnaDARv10 174090..174251 + |
| 1626340431.9756815-CDS-A01_BnaDARv10:174350..174680 | 1626340431.9756815-CDS-A01_BnaDARv10:174350..174680 | Brassica napus | CDS | A01_BnaDARv10 174351..174680 + |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340431.9833922-three_prime_UTR-A01_BnaDARv10:174680..174907 | 1626340431.9833922-three_prime_UTR-A01_BnaDARv10:174680..174907 | Brassica napus | three_prime_UTR | A01_BnaDARv10 174681..174907 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >A01p00350.1_BnaDARv10-RA ID=A01p00350.1_BnaDARv10-RA|Name=A01p00350.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1777bp|location=Sequence derived from alignment at A01_BnaDARv10:172862..174907+ (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.
TCCTTCTCACACTCTTAAACGCACGCCAGGAAGGAGACTCTCTCATGGGC
AGGGAAGTCCATAACTGAAAATAAAAAATAACGGAAGAGAGAAAATAATA
ATAAAATCGCTCACCCTCCCTTACTTGGATTCATCGTCTTCCTCCGCCGC
GGCAGTAACATCAACCGCCGTGCTGATTCCTCTCCGTTATCTGGTACCAA
TTCTCTCTCTCTCGTGAAGAATCAGCTTTACTTCTTAAACCCTTTTTTAA
ATTGTTTTGATTTGTTCATTCTGATTATATGCTACTTCACATTTTCTGGA
TTGTTTCTTAATTAGAAGAATTCGCTAGAAAATGTGCAAATCCTTTTTGT
CATGAGTATAAATATTGGATCTGATTTAAATTTTTTTATAGTTAAGAGCT
TTGTGACAACGGAAACTCATTAGATCGTTTCGGCCTTTTTTAGATCTAAA
TCGTGTAATTGCGATAATGAAAATGGATCTAGAAAACAGCTAAACTGAGA
TCTACTTTTGATTTGTTTGCAGAGATCTAAATAAAGAAAGAGATGGGTGG
AACAAGCAAGACGGATCAAAAAGCAGCTTTGGACATTGCATCATGGCTCT
TCAATGTCGTTACTTCCGTTGGGATCATCCTCGTTAACAAAGCCTTGATG
GCCACTTACGGCTTTAGTTTCGCTACGACGTTAACCGGTTTGCACTTCGG
AACCACCACACTGCTGACTACTTTCTTGACGTGGCTCGGTTACATCCAAC
CTTCTCAGCTTCCCTGGCCCGATCTTCTCAAGTTCGTTTTGTTCGCTAAC
TTCTCTATCGTTGGCATGAACGTCAGCCTCATGTGGAACTCTGTTGGCTT
CTACCAGATCGCGAAGCTGAGTATGATCCCTGTCTCTTGTCTTCTAGAAG
TTGTTCTTGACAAGGTCAGGTACTCGAGAGATACGAAGCTCAGCATTTTG
TTAGTTCTTGCTGGTGTTGCCGTCTGTACTGTTACCGATGTTAGTGTCAA
CCTCAACGGGTTCCTCGCTGCAGCCATTGCTGTCTGGAGCACCGCCCTTC
AGCAATACTATGTACATCATCTACAGCGGAAATATTCGCTTGGCTCTTTC
AATCTGCTGGCTCATACGGCTCCAGTGCAAGCTGCATCCTTGTTGTTGGT
TGGACCATTTCTAGACTACTGGTTGACTAACCAAAGAGTTGATGCTTTCA
ACTTTTCATTTGTTTCTCTGTTCTTCCTAATACTCTCGTGCAGTATCGCG
GTCGGGACGAATCTCAGCCAATTCATTTGTATCGGAAGATTCACGGCGGT
GTCTTTCCAAGTACTTGGTCACATGAAGACGATCCTGGTTTTGGTTTTGG
GATTCACTTTCTTCGGTAAAGAAGGCTTAAACATGCAAGTGGTACTTGGA
ATGCTCATTGCCATCCTCGGTATGATCTGGTACGGTAATGCATCTTCTAA
ACCTGGCGGTAAAGAGCGTCGTAGCCTCTCTATTCCCATTACCAAGGCAC
ATAAACTCAGTAGTTTATCTGAAACTGCCGAGTCTGATGAAAAGGTCTAA
TAAGAAACAAGTGATCGGCATTGACATAGAAACAAAAACAAGAAACTCAG
ATACACAACAGCTAGAGAGTATCAAATGGGGTCTTTACAAACAAAGGGGT
TTAAATTATTTAATTTTCCATAAACTATATTTTTCTTTTCCTTACAGATC
TTTTTTTGTTGTTGTTTAATCCTTTTTTGGCCTTTGCATATTGGATTTTT
TGCTTAATTCTCCCAAAAGAAACATCA back to topprotein sequence of A01p00350.1_BnaDARv10-RA >A01p00350.1_BnaDARv10-PA ID=A01p00350.1_BnaDARv10-PA|Name=A01p00350.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=336bp
MGGTSKTDQKAALDIASWLFNVVTSVGIILVNKALMATYGFSFATTLTGL
HFGTTTLLTTFLTWLGYIQPSQLPWPDLLKFVLFANFSIVGMNVSLMWNS
VGFYQIAKLSMIPVSCLLEVVLDKVRYSRDTKLSILLVLAGVAVCTVTDV
SVNLNGFLAAAIAVWSTALQQYYVHHLQRKYSLGSFNLLAHTAPVQAASL
LLVGPFLDYWLTNQRVDAFNFSFVSLFFLILSCSIAVGTNLSQFICIGRF
TAVSFQVLGHMKTILVLVLGFTFFGKEGLNMQVVLGMLIAILGMIWYGNA
SSKPGGKERRSLSIPITKAHKLSSLSETAESDEKV. back to topmRNA from alignment at A01_BnaDARv10:172862..174907+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >A01p00350.1_BnaDARv10-RA ID=A01p00350.1_BnaDARv10-RA|Name=A01p00350.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=2046bp|location=Sequence derived from alignment at A01_BnaDARv10:172862..174907+ (Brassica napus)
TCCTTCTCACACTCTTAAACGCACGCCAGGAAGGAGACTCTCTCATGGGC
AGGGAAGTCCATAACTGAAAATAAAAAATAACGGAAGAGAGAAAATAATA
ATAAAATCGCTCACCCTCCCTTACTTGGATTCATCGTCTTCCTCCGCCGC
GGCAGTAACATCAACCGCCGTGCTGATTCCTCTCCGTTATCTGGTACCAA
TTCTCTCTCTCTCGTGAAGAATCAGCTTTACTTCTTAAACCCTTTTTTAA
ATTGTTTTGATTTGTTCATTCTGATTATATGCTACTTCACATTTTCTGGA
TTGTTTCTTAATTAGAAGAATTCGCTAGAAAATGTGCAAATCCTTTTTGT
CATGAGTATAAATATTGGATCTGATTTAAATTTTTTTATAGTTAAGAGCT
TTGTGACAACGGAAACTCATTAGATCGTTTCGGCCTTTTTTAGATCTAAA
TCGTGTAATTGCGATAATGAAAATGGATCTAGAAAACAGCTAAACTGAGA
TCTACTTTTGATTTGTTTGCAGAGATCTAAATAAAGAAAGAGATGGGTGG
AACAAGCAAGACGGATCAAAAAGCAGCTTTGGACATTGCATCATGGCTCT
TCAATGTCGTTACTTCCGTTGGGATCATCCTCGTTAACAAAGCCTTGATG
GCCACTTACGGCTTTAGTTTCGGTCTCTCTCTTTATCAACTCATCCATAG
TCAACAGTGTCGTTGACTTTGTTTTTAAAACTGATTTTTAATATCTGCTT
TTGACACTCACACAGCTACGACGTTAACCGGTTTGCACTTCGGAACCACC
ACACTGCTGACTACTTTCTTGACGTGGCTCGGTTACATCCAACCTTCTCA
GCTTCCCTGGCCCGATCTTCTCAAGTTCGTTTTGTTCGCTAACTTCTCTA
TCGTTGGCATGAACGTCAGCCTCATGTGGAACTCTGTTGGCTTCTACCAG
ATCGCGAAGCTGAGTATGATCCCTGTCTCTTGTCTTCTAGAAGTTGTTCT
TGACAAGGTCAGGTACTCGAGAGATACGAAGCTCAGCATTTTGTTAGTTC
TTGCTGGTGTTGCCGTCTGTACTGTTACCGATGTTAGTGTCAACCTCAAC
GGGTTCCTCGCTGCAGCCATTGCTGTCTGGAGCACCGCCCTTCAGCAATA
CGTAATTGTTTTTATATCCTTATAGCCTTAAGCATGCTCAAATCTCATTT
CTAAATAACTGTTACTTTTTTTTTGCAGTATGTACATCATCTACAGCGGA
AATATTCGCTTGGCTCTTTCAATCTGCTGGCTCATACGGCTCCAGTGCAA
GCTGCATCCTTGTTGTTGGTTGGACCATTTCTAGACTACTGGTTGACTAA
CCAAAGAGTTGATGCTTTCAACTTTTCATTTGTTTCTCTGGTAAAGTGTC
CCTCATCTGGTTCTTTACAAAGTCTTGTATGATTCCAAATAGGCATTTTG
AACTCGCTTTTTAATTCAGTTTTGTTGTTGTTTGGGCAGTTCTTCCTAAT
ACTCTCGTGCAGTATCGCGGTCGGGACGAATCTCAGCCAATTCATTTGTA
TCGGAAGATTCACGGCGGTGTCTTTCCAAGTACTTGGTCACATGAAGACG
ATCCTGGTTTTGGTTTTGGGATTCACTTTCTTCGGTAAAGAAGGCTTAAA
CATGCAAGTGGTACTTGGAATGCTCATTGCCATCCTCGGTATGATCTGGT
ACGGTAATGCATCTTCTAAACCTGGCGGTAAAGAGCGTCGTAGCCTCTCT
ATTCCCATTACCAAGGCACATAAACTCAGTAGTTTATCTGAAACTGCCGA
GTCTGATGAAAAGGTCTAATAAGAAACAAGTGATCGGCATTGACATAGAA
ACAAAAACAAGAAACTCAGATACACAACAGCTAGAGAGTATCAAATGGGG
TCTTTACAAACAAAGGGGTTTAAATTATTTAATTTTCCATAAACTATATT
TTTCTTTTCCTTACAGATCTTTTTTTGTTGTTGTTTAATCCTTTTTTGGC
CTTTGCATATTGGATTTTTTGCTTAATTCTCCCAAAAGAAACATCA back to topCoding sequence (CDS) from alignment at A01_BnaDARv10:172862..174907+ >A01p00350.1_BnaDARv10-RA ID=A01p00350.1_BnaDARv10-RA|Name=A01p00350.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=1008bp|location=Sequence derived from alignment at A01_BnaDARv10:172862..174907+ (Brassica napus)
ATGGGTGGAACAAGCAAGACGGATCAAAAAGCAGCTTTGGACATTGCATC
ATGGCTCTTCAATGTCGTTACTTCCGTTGGGATCATCCTCGTTAACAAAG
CCTTGATGGCCACTTACGGCTTTAGTTTCGCTACGACGTTAACCGGTTTG
CACTTCGGAACCACCACACTGCTGACTACTTTCTTGACGTGGCTCGGTTA
CATCCAACCTTCTCAGCTTCCCTGGCCCGATCTTCTCAAGTTCGTTTTGT
TCGCTAACTTCTCTATCGTTGGCATGAACGTCAGCCTCATGTGGAACTCT
GTTGGCTTCTACCAGATCGCGAAGCTGAGTATGATCCCTGTCTCTTGTCT
TCTAGAAGTTGTTCTTGACAAGGTCAGGTACTCGAGAGATACGAAGCTCA
GCATTTTGTTAGTTCTTGCTGGTGTTGCCGTCTGTACTGTTACCGATGTT
AGTGTCAACCTCAACGGGTTCCTCGCTGCAGCCATTGCTGTCTGGAGCAC
CGCCCTTCAGCAATACTATGTACATCATCTACAGCGGAAATATTCGCTTG
GCTCTTTCAATCTGCTGGCTCATACGGCTCCAGTGCAAGCTGCATCCTTG
TTGTTGGTTGGACCATTTCTAGACTACTGGTTGACTAACCAAAGAGTTGA
TGCTTTCAACTTTTCATTTGTTTCTCTGTTCTTCCTAATACTCTCGTGCA
GTATCGCGGTCGGGACGAATCTCAGCCAATTCATTTGTATCGGAAGATTC
ACGGCGGTGTCTTTCCAAGTACTTGGTCACATGAAGACGATCCTGGTTTT
GGTTTTGGGATTCACTTTCTTCGGTAAAGAAGGCTTAAACATGCAAGTGG
TACTTGGAATGCTCATTGCCATCCTCGGTATGATCTGGTACGGTAATGCA
TCTTCTAAACCTGGCGGTAAAGAGCGTCGTAGCCTCTCTATTCCCATTAC
CAAGGCACATAAACTCAGTAGTTTATCTGAAACTGCCGAGTCTGATGAAA
AGGTCTAA back to top
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