A01p00350.1_BnaDARv10-RA (mRNA) Brassica napus

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameA01p00350.1_BnaDARv10-RA
Unique NameA01p00350.1_BnaDARv10-RA
TypemRNA
OrganismBrassica napus (cv. Darmor-bzh, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01_BnaDARv10contigA01_BnaDARv10:172862..174907 +    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Darmor-bzh OGS10 v102020-07-22
Properties
Property NameValue
Stop1
Start1
Model size1448
Exons5
Cds size1008
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
A01p00350.1_BnaDARv10A01p00350.1_BnaDARv10Brassica napusgeneA01_BnaDARv10 172862..174907 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p00350.1_BnaDARv10-RAA01p00350.1_BnaDARv10-PABrassica napuspolypeptideA01_BnaDARv10 173404..174680 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340431.94382-five_prime_UTR-A01_BnaDARv10:172861..1730541626340431.94382-five_prime_UTR-A01_BnaDARv10:172861..173054Brassica napusfive_prime_UTRA01_BnaDARv10 172862..173054 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p00350.1_BnaDARv10_exon1A01p00350.1_BnaDARv10_exon1Brassica napusexonA01_BnaDARv10 172862..173533 +
A01p00350.1_BnaDARv10_exon2A01p00350.1_BnaDARv10_exon2Brassica napusexonA01_BnaDARv10 173627..174012 +
A01p00350.1_BnaDARv10_exon3A01p00350.1_BnaDARv10_exon3Brassica napusexonA01_BnaDARv10 174090..174251 +
A01p00350.1_BnaDARv10_exon4A01p00350.1_BnaDARv10_exon4Brassica napusexonA01_BnaDARv10 174351..174907 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340431.9525495-CDS-A01_BnaDARv10:173403..1735331626340431.9525495-CDS-A01_BnaDARv10:173403..173533Brassica napusCDSA01_BnaDARv10 173404..173533 +
1626340431.9605913-CDS-A01_BnaDARv10:173626..1740121626340431.9605913-CDS-A01_BnaDARv10:173626..174012Brassica napusCDSA01_BnaDARv10 173627..174012 +
1626340431.9678512-CDS-A01_BnaDARv10:174089..1742511626340431.9678512-CDS-A01_BnaDARv10:174089..174251Brassica napusCDSA01_BnaDARv10 174090..174251 +
1626340431.9756815-CDS-A01_BnaDARv10:174350..1746801626340431.9756815-CDS-A01_BnaDARv10:174350..174680Brassica napusCDSA01_BnaDARv10 174351..174680 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340431.9833922-three_prime_UTR-A01_BnaDARv10:174680..1749071626340431.9833922-three_prime_UTR-A01_BnaDARv10:174680..174907Brassica napusthree_prime_UTRA01_BnaDARv10 174681..174907 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>A01p00350.1_BnaDARv10-RA ID=A01p00350.1_BnaDARv10-RA|Name=A01p00350.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1777bp|location=Sequence derived from alignment at A01_BnaDARv10:172862..174907+ (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.  
TCCTTCTCACACTCTTAAACGCACGCCAGGAAGGAGACTCTCTCATGGGC
AGGGAAGTCCATAACTGAAAATAAAAAATAACGGAAGAGAGAAAATAATA
ATAAAATCGCTCACCCTCCCTTACTTGGATTCATCGTCTTCCTCCGCCGC
GGCAGTAACATCAACCGCCGTGCTGATTCCTCTCCGTTATCTGGTACCAA
TTCTCTCTCTCTCGTGAAGAATCAGCTTTACTTCTTAAACCCTTTTTTAA
ATTGTTTTGATTTGTTCATTCTGATTATATGCTACTTCACATTTTCTGGA
TTGTTTCTTAATTAGAAGAATTCGCTAGAAAATGTGCAAATCCTTTTTGT
CATGAGTATAAATATTGGATCTGATTTAAATTTTTTTATAGTTAAGAGCT
TTGTGACAACGGAAACTCATTAGATCGTTTCGGCCTTTTTTAGATCTAAA
TCGTGTAATTGCGATAATGAAAATGGATCTAGAAAACAGCTAAACTGAGA
TCTACTTTTGATTTGTTTGCAGAGATCTAAATAAAGAAAGAGATGGGTGG
AACAAGCAAGACGGATCAAAAAGCAGCTTTGGACATTGCATCATGGCTCT
TCAATGTCGTTACTTCCGTTGGGATCATCCTCGTTAACAAAGCCTTGATG
GCCACTTACGGCTTTAGTTTCGCTACGACGTTAACCGGTTTGCACTTCGG
AACCACCACACTGCTGACTACTTTCTTGACGTGGCTCGGTTACATCCAAC
CTTCTCAGCTTCCCTGGCCCGATCTTCTCAAGTTCGTTTTGTTCGCTAAC
TTCTCTATCGTTGGCATGAACGTCAGCCTCATGTGGAACTCTGTTGGCTT
CTACCAGATCGCGAAGCTGAGTATGATCCCTGTCTCTTGTCTTCTAGAAG
TTGTTCTTGACAAGGTCAGGTACTCGAGAGATACGAAGCTCAGCATTTTG
TTAGTTCTTGCTGGTGTTGCCGTCTGTACTGTTACCGATGTTAGTGTCAA
CCTCAACGGGTTCCTCGCTGCAGCCATTGCTGTCTGGAGCACCGCCCTTC
AGCAATACTATGTACATCATCTACAGCGGAAATATTCGCTTGGCTCTTTC
AATCTGCTGGCTCATACGGCTCCAGTGCAAGCTGCATCCTTGTTGTTGGT
TGGACCATTTCTAGACTACTGGTTGACTAACCAAAGAGTTGATGCTTTCA
ACTTTTCATTTGTTTCTCTGTTCTTCCTAATACTCTCGTGCAGTATCGCG
GTCGGGACGAATCTCAGCCAATTCATTTGTATCGGAAGATTCACGGCGGT
GTCTTTCCAAGTACTTGGTCACATGAAGACGATCCTGGTTTTGGTTTTGG
GATTCACTTTCTTCGGTAAAGAAGGCTTAAACATGCAAGTGGTACTTGGA
ATGCTCATTGCCATCCTCGGTATGATCTGGTACGGTAATGCATCTTCTAA
ACCTGGCGGTAAAGAGCGTCGTAGCCTCTCTATTCCCATTACCAAGGCAC
ATAAACTCAGTAGTTTATCTGAAACTGCCGAGTCTGATGAAAAGGTCTAA
TAAGAAACAAGTGATCGGCATTGACATAGAAACAAAAACAAGAAACTCAG
ATACACAACAGCTAGAGAGTATCAAATGGGGTCTTTACAAACAAAGGGGT
TTAAATTATTTAATTTTCCATAAACTATATTTTTCTTTTCCTTACAGATC
TTTTTTTGTTGTTGTTTAATCCTTTTTTGGCCTTTGCATATTGGATTTTT
TGCTTAATTCTCCCAAAAGAAACATCA
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protein sequence of A01p00350.1_BnaDARv10-RA

>A01p00350.1_BnaDARv10-PA ID=A01p00350.1_BnaDARv10-PA|Name=A01p00350.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=336bp
MGGTSKTDQKAALDIASWLFNVVTSVGIILVNKALMATYGFSFATTLTGL
HFGTTTLLTTFLTWLGYIQPSQLPWPDLLKFVLFANFSIVGMNVSLMWNS
VGFYQIAKLSMIPVSCLLEVVLDKVRYSRDTKLSILLVLAGVAVCTVTDV
SVNLNGFLAAAIAVWSTALQQYYVHHLQRKYSLGSFNLLAHTAPVQAASL
LLVGPFLDYWLTNQRVDAFNFSFVSLFFLILSCSIAVGTNLSQFICIGRF
TAVSFQVLGHMKTILVLVLGFTFFGKEGLNMQVVLGMLIAILGMIWYGNA
SSKPGGKERRSLSIPITKAHKLSSLSETAESDEKV.
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mRNA from alignment at A01_BnaDARv10:172862..174907+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>A01p00350.1_BnaDARv10-RA ID=A01p00350.1_BnaDARv10-RA|Name=A01p00350.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=2046bp|location=Sequence derived from alignment at A01_BnaDARv10:172862..174907+ (Brassica napus)
TCCTTCTCACACTCTTAAACGCACGCCAGGAAGGAGACTCTCTCATGGGC
AGGGAAGTCCATAACTGAAAATAAAAAATAACGGAAGAGAGAAAATAATA
ATAAAATCGCTCACCCTCCCTTACTTGGATTCATCGTCTTCCTCCGCCGC
GGCAGTAACATCAACCGCCGTGCTGATTCCTCTCCGTTATCTGGTACCAA
TTCTCTCTCTCTCGTGAAGAATCAGCTTTACTTCTTAAACCCTTTTTTAA
ATTGTTTTGATTTGTTCATTCTGATTATATGCTACTTCACATTTTCTGGA
TTGTTTCTTAATTAGAAGAATTCGCTAGAAAATGTGCAAATCCTTTTTGT
CATGAGTATAAATATTGGATCTGATTTAAATTTTTTTATAGTTAAGAGCT
TTGTGACAACGGAAACTCATTAGATCGTTTCGGCCTTTTTTAGATCTAAA
TCGTGTAATTGCGATAATGAAAATGGATCTAGAAAACAGCTAAACTGAGA
TCTACTTTTGATTTGTTTGCAGAGATCTAAATAAAGAAAGAGATGGGTGG
AACAAGCAAGACGGATCAAAAAGCAGCTTTGGACATTGCATCATGGCTCT
TCAATGTCGTTACTTCCGTTGGGATCATCCTCGTTAACAAAGCCTTGATG
GCCACTTACGGCTTTAGTTTCGGTCTCTCTCTTTATCAACTCATCCATAG
TCAACAGTGTCGTTGACTTTGTTTTTAAAACTGATTTTTAATATCTGCTT
TTGACACTCACACAGCTACGACGTTAACCGGTTTGCACTTCGGAACCACC
ACACTGCTGACTACTTTCTTGACGTGGCTCGGTTACATCCAACCTTCTCA
GCTTCCCTGGCCCGATCTTCTCAAGTTCGTTTTGTTCGCTAACTTCTCTA
TCGTTGGCATGAACGTCAGCCTCATGTGGAACTCTGTTGGCTTCTACCAG
ATCGCGAAGCTGAGTATGATCCCTGTCTCTTGTCTTCTAGAAGTTGTTCT
TGACAAGGTCAGGTACTCGAGAGATACGAAGCTCAGCATTTTGTTAGTTC
TTGCTGGTGTTGCCGTCTGTACTGTTACCGATGTTAGTGTCAACCTCAAC
GGGTTCCTCGCTGCAGCCATTGCTGTCTGGAGCACCGCCCTTCAGCAATA
CGTAATTGTTTTTATATCCTTATAGCCTTAAGCATGCTCAAATCTCATTT
CTAAATAACTGTTACTTTTTTTTTGCAGTATGTACATCATCTACAGCGGA
AATATTCGCTTGGCTCTTTCAATCTGCTGGCTCATACGGCTCCAGTGCAA
GCTGCATCCTTGTTGTTGGTTGGACCATTTCTAGACTACTGGTTGACTAA
CCAAAGAGTTGATGCTTTCAACTTTTCATTTGTTTCTCTGGTAAAGTGTC
CCTCATCTGGTTCTTTACAAAGTCTTGTATGATTCCAAATAGGCATTTTG
AACTCGCTTTTTAATTCAGTTTTGTTGTTGTTTGGGCAGTTCTTCCTAAT
ACTCTCGTGCAGTATCGCGGTCGGGACGAATCTCAGCCAATTCATTTGTA
TCGGAAGATTCACGGCGGTGTCTTTCCAAGTACTTGGTCACATGAAGACG
ATCCTGGTTTTGGTTTTGGGATTCACTTTCTTCGGTAAAGAAGGCTTAAA
CATGCAAGTGGTACTTGGAATGCTCATTGCCATCCTCGGTATGATCTGGT
ACGGTAATGCATCTTCTAAACCTGGCGGTAAAGAGCGTCGTAGCCTCTCT
ATTCCCATTACCAAGGCACATAAACTCAGTAGTTTATCTGAAACTGCCGA
GTCTGATGAAAAGGTCTAATAAGAAACAAGTGATCGGCATTGACATAGAA
ACAAAAACAAGAAACTCAGATACACAACAGCTAGAGAGTATCAAATGGGG
TCTTTACAAACAAAGGGGTTTAAATTATTTAATTTTCCATAAACTATATT
TTTCTTTTCCTTACAGATCTTTTTTTGTTGTTGTTTAATCCTTTTTTGGC
CTTTGCATATTGGATTTTTTGCTTAATTCTCCCAAAAGAAACATCA
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Coding sequence (CDS) from alignment at A01_BnaDARv10:172862..174907+

>A01p00350.1_BnaDARv10-RA ID=A01p00350.1_BnaDARv10-RA|Name=A01p00350.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=1008bp|location=Sequence derived from alignment at A01_BnaDARv10:172862..174907+ (Brassica napus)
ATGGGTGGAACAAGCAAGACGGATCAAAAAGCAGCTTTGGACATTGCATC
ATGGCTCTTCAATGTCGTTACTTCCGTTGGGATCATCCTCGTTAACAAAG
CCTTGATGGCCACTTACGGCTTTAGTTTCGCTACGACGTTAACCGGTTTG
CACTTCGGAACCACCACACTGCTGACTACTTTCTTGACGTGGCTCGGTTA
CATCCAACCTTCTCAGCTTCCCTGGCCCGATCTTCTCAAGTTCGTTTTGT
TCGCTAACTTCTCTATCGTTGGCATGAACGTCAGCCTCATGTGGAACTCT
GTTGGCTTCTACCAGATCGCGAAGCTGAGTATGATCCCTGTCTCTTGTCT
TCTAGAAGTTGTTCTTGACAAGGTCAGGTACTCGAGAGATACGAAGCTCA
GCATTTTGTTAGTTCTTGCTGGTGTTGCCGTCTGTACTGTTACCGATGTT
AGTGTCAACCTCAACGGGTTCCTCGCTGCAGCCATTGCTGTCTGGAGCAC
CGCCCTTCAGCAATACTATGTACATCATCTACAGCGGAAATATTCGCTTG
GCTCTTTCAATCTGCTGGCTCATACGGCTCCAGTGCAAGCTGCATCCTTG
TTGTTGGTTGGACCATTTCTAGACTACTGGTTGACTAACCAAAGAGTTGA
TGCTTTCAACTTTTCATTTGTTTCTCTGTTCTTCCTAATACTCTCGTGCA
GTATCGCGGTCGGGACGAATCTCAGCCAATTCATTTGTATCGGAAGATTC
ACGGCGGTGTCTTTCCAAGTACTTGGTCACATGAAGACGATCCTGGTTTT
GGTTTTGGGATTCACTTTCTTCGGTAAAGAAGGCTTAAACATGCAAGTGG
TACTTGGAATGCTCATTGCCATCCTCGGTATGATCTGGTACGGTAATGCA
TCTTCTAAACCTGGCGGTAAAGAGCGTCGTAGCCTCTCTATTCCCATTAC
CAAGGCACATAAACTCAGTAGTTTATCTGAAACTGCCGAGTCTGATGAAA
AGGTCTAA
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