Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 868 |
| Exons | 3 |
| Cds size | 849 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| A01p07850.1_BnaDARv10 | A01p07850.1_BnaDARv10 | Brassica napus | gene | A01_BnaDARv10 3484529..3485591 + |
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340516.904114-five_prime_UTR-A01_BnaDARv10:3484528..3484547 | 1626340516.904114-five_prime_UTR-A01_BnaDARv10:3484528..3484547 | Brassica napus | five_prime_UTR | A01_BnaDARv10 3484529..3484547 + |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| A01p07850.1_BnaDARv10_exon1 | A01p07850.1_BnaDARv10_exon1 | Brassica napus | exon | A01_BnaDARv10 3484529..3484829 + |
| A01p07850.1_BnaDARv10_exon2 | A01p07850.1_BnaDARv10_exon2 | Brassica napus | exon | A01_BnaDARv10 3484932..3485125 + |
| A01p07850.1_BnaDARv10_exon3 | A01p07850.1_BnaDARv10_exon3 | Brassica napus | exon | A01_BnaDARv10 3485219..3485591 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340516.9124107-CDS-A01_BnaDARv10:3484547..3484829 | 1626340516.9124107-CDS-A01_BnaDARv10:3484547..3484829 | Brassica napus | CDS | A01_BnaDARv10 3484548..3484829 + |
| 1626340516.9216526-CDS-A01_BnaDARv10:3484931..3485125 | 1626340516.9216526-CDS-A01_BnaDARv10:3484931..3485125 | Brassica napus | CDS | A01_BnaDARv10 3484932..3485125 + |
| 1626340516.9288259-CDS-A01_BnaDARv10:3485218..3485591 | 1626340516.9288259-CDS-A01_BnaDARv10:3485218..3485591 | Brassica napus | CDS | A01_BnaDARv10 3485219..3485591 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >A01p07850.1_BnaDARv10-RA ID=A01p07850.1_BnaDARv10-RA|Name=A01p07850.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=868bp|location=Sequence derived from alignment at A01_BnaDARv10:3484529..3485591+ (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.
CAAAGATCTACAAATTAAAATGAAGTTTTCTTGCGGTACAAGGTTTGCCT
TCTTGGCTCTCTTCCTCTTTGCGCTACAATCTGTGTGTGTCTATGCGGGT
AGCTTCCACAAAGACGTTCAGATACATTGGGGTGATGGCCGTGGAAAGAT
TCACGACAATGAAGGAAAACTTCTTTCTCTCTCGCTTGACAAATCCTCTG
GATCCGGTTTCCAATCCAACCAAGAGTTTCTTTATGGCAAAGCCGAGGTT
CAAATGAAGCTTGTCCCTGGTAACTCTGCTGGAACAGTCACAACTTTCTA
TCTTAAAGCGCCTGGAACTATGTGGGATGAGATCGATTTCGAGTTCTTGG
GAAACATAAGTGGTCATCCTTATACTCTTCATACTAATGTTTACACAAAA
GGCACAGGAGACAAAGAACAACAATTTCATTTATGGTTCGACCCAACCCT
TGGCTTTCACACTTATTGCATCACATGGAACCCCCAAAGGATTATCTTTA
CAGTTGATGGTATTCCCATCAGAGAGTTCAAGAACTCTGAGTCAATTGGA
ATTCCATTCCCAAAGGACCAACCAATGAGAGTCTACGCTAGCCTTTGGGA
GGCCGAGCATTGGGCTACAAGAGGAGGATTAGAGAAAACAGATTGGTCCA
AGGCTCCTTTTACTGCTTTCTATAGAAACTACAATGTGGAAGGATGTGTT
TGGGCTAATGGAAAATCATCTTGTCCAGCGAATTCCCCATGGTTCACTCA
GACACTCGACAAGAGTGGCATAGATAAAGTGAAATGGGCGCAGAGTAAAT
ACATGGTCTATAACTATTGCACCGATACAAAAAGGTTTCCTAAAGGTGTC
CCTAAAGTGTGCACTTAA back to topprotein sequence of A01p07850.1_BnaDARv10-RA >A01p07850.1_BnaDARv10-PA ID=A01p07850.1_BnaDARv10-PA|Name=A01p07850.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=283bp
MKFSCGTRFAFLALFLFALQSVCVYAGSFHKDVQIHWGDGRGKIHDNEGK
LLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKAPGT
MWDEIDFEFLGNISGHPYTLHTNVYTKGTGDKEQQFHLWFDPTLGFHTYC
ITWNPQRIIFTVDGIPIREFKNSESIGIPFPKDQPMRVYASLWEAEHWAT
RGGLEKTDWSKAPFTAFYRNYNVEGCVWANGKSSCPANSPWFTQTLDKSG
IDKVKWAQSKYMVYNYCTDTKRFPKGVPKVCT. back to topmRNA from alignment at A01_BnaDARv10:3484529..3485591+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >A01p07850.1_BnaDARv10-RA ID=A01p07850.1_BnaDARv10-RA|Name=A01p07850.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1063bp|location=Sequence derived from alignment at A01_BnaDARv10:3484529..3485591+ (Brassica napus)
CAAAGATCTACAAATTAAAATGAAGTTTTCTTGCGGTACAAGGTTTGCCT
TCTTGGCTCTCTTCCTCTTTGCGCTACAATCTGTGTGTGTCTATGCGGGT
AGCTTCCACAAAGACGTTCAGATACATTGGGGTGATGGCCGTGGAAAGAT
TCACGACAATGAAGGAAAACTTCTTTCTCTCTCGCTTGACAAATCCTCTG
GATCCGGTTTCCAATCCAACCAAGAGTTTCTTTATGGCAAAGCCGAGGTT
CAAATGAAGCTTGTCCCTGGTAACTCTGCTGGAACAGTCACAACTTTCTA
TGTAAGTAACATATTGTCTCTAAGCATTTTTGTCATATTTTACTATACGT
TTGATTACATATAGTTATTGAGCGTGTTGGTGTTTTATGATGACTTTGTG
TAGCTTAAAGCGCCTGGAACTATGTGGGATGAGATCGATTTCGAGTTCTT
GGGAAACATAAGTGGTCATCCTTATACTCTTCATACTAATGTTTACACAA
AAGGCACAGGAGACAAAGAACAACAATTTCATTTATGGTTCGACCCAACC
CTTGGCTTTCACACTTATTGCATCACATGGAACCCCCAAAGGATTATGTA
AGTTCTCCTTTGATCCCTTATAGTCTCATATGTTTTGAGGTTATGTGTTT
ATGAATCAATATTTTCCTCTTTTTTTGTTTGCTTTATCAGCTTTACAGTT
GATGGTATTCCCATCAGAGAGTTCAAGAACTCTGAGTCAATTGGAATTCC
ATTCCCAAAGGACCAACCAATGAGAGTCTACGCTAGCCTTTGGGAGGCCG
AGCATTGGGCTACAAGAGGAGGATTAGAGAAAACAGATTGGTCCAAGGCT
CCTTTTACTGCTTTCTATAGAAACTACAATGTGGAAGGATGTGTTTGGGC
TAATGGAAAATCATCTTGTCCAGCGAATTCCCCATGGTTCACTCAGACAC
TCGACAAGAGTGGCATAGATAAAGTGAAATGGGCGCAGAGTAAATACATG
GTCTATAACTATTGCACCGATACAAAAAGGTTTCCTAAAGGTGTCCCTAA
AGTGTGCACTTAA back to topCoding sequence (CDS) from alignment at A01_BnaDARv10:3484529..3485591+ >A01p07850.1_BnaDARv10-RA ID=A01p07850.1_BnaDARv10-RA|Name=A01p07850.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=849bp|location=Sequence derived from alignment at A01_BnaDARv10:3484529..3485591+ (Brassica napus)
ATGAAGTTTTCTTGCGGTACAAGGTTTGCCTTCTTGGCTCTCTTCCTCTT
TGCGCTACAATCTGTGTGTGTCTATGCGGGTAGCTTCCACAAAGACGTTC
AGATACATTGGGGTGATGGCCGTGGAAAGATTCACGACAATGAAGGAAAA
CTTCTTTCTCTCTCGCTTGACAAATCCTCTGGATCCGGTTTCCAATCCAA
CCAAGAGTTTCTTTATGGCAAAGCCGAGGTTCAAATGAAGCTTGTCCCTG
GTAACTCTGCTGGAACAGTCACAACTTTCTATCTTAAAGCGCCTGGAACT
ATGTGGGATGAGATCGATTTCGAGTTCTTGGGAAACATAAGTGGTCATCC
TTATACTCTTCATACTAATGTTTACACAAAAGGCACAGGAGACAAAGAAC
AACAATTTCATTTATGGTTCGACCCAACCCTTGGCTTTCACACTTATTGC
ATCACATGGAACCCCCAAAGGATTATCTTTACAGTTGATGGTATTCCCAT
CAGAGAGTTCAAGAACTCTGAGTCAATTGGAATTCCATTCCCAAAGGACC
AACCAATGAGAGTCTACGCTAGCCTTTGGGAGGCCGAGCATTGGGCTACA
AGAGGAGGATTAGAGAAAACAGATTGGTCCAAGGCTCCTTTTACTGCTTT
CTATAGAAACTACAATGTGGAAGGATGTGTTTGGGCTAATGGAAAATCAT
CTTGTCCAGCGAATTCCCCATGGTTCACTCAGACACTCGACAAGAGTGGC
ATAGATAAAGTGAAATGGGCGCAGAGTAAATACATGGTCTATAACTATTG
CACCGATACAAAAAGGTTTCCTAAAGGTGTCCCTAAAGTGTGCACTTAA back to top
|