Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1197 |
| Exons | 10 |
| Cds size | 981 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| A01p04790.1_BnaDARv10 | A01p04790.1_BnaDARv10 | Brassica napus | gene | A01_BnaDARv10 2173431..2176211 + |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340481.1299686-five_prime_UTR-A01_BnaDARv10:2173430..2173460 | 1626340481.1299686-five_prime_UTR-A01_BnaDARv10:2173430..2173460 | Brassica napus | five_prime_UTR | A01_BnaDARv10 2173431..2173460 + |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| A01p04790.1_BnaDARv10_exon1 | A01p04790.1_BnaDARv10_exon1 | Brassica napus | exon | A01_BnaDARv10 2173431..2173880 + |
| A01p04790.1_BnaDARv10_exon2 | A01p04790.1_BnaDARv10_exon2 | Brassica napus | exon | A01_BnaDARv10 2173986..2174083 + |
| A01p04790.1_BnaDARv10_exon3 | A01p04790.1_BnaDARv10_exon3 | Brassica napus | exon | A01_BnaDARv10 2174159..2174204 + |
| A01p04790.1_BnaDARv10_exon4 | A01p04790.1_BnaDARv10_exon4 | Brassica napus | exon | A01_BnaDARv10 2174330..2174412 + |
| A01p04790.1_BnaDARv10_exon5 | A01p04790.1_BnaDARv10_exon5 | Brassica napus | exon | A01_BnaDARv10 2174514..2174559 + |
| A01p04790.1_BnaDARv10_exon6 | A01p04790.1_BnaDARv10_exon6 | Brassica napus | exon | A01_BnaDARv10 2174973..2175053 + |
| A01p04790.1_BnaDARv10_exon7 | A01p04790.1_BnaDARv10_exon7 | Brassica napus | exon | A01_BnaDARv10 2175332..2175391 + |
| A01p04790.1_BnaDARv10_exon8 | A01p04790.1_BnaDARv10_exon8 | Brassica napus | exon | A01_BnaDARv10 2175514..2175546 + |
| A01p04790.1_BnaDARv10_exon9 | A01p04790.1_BnaDARv10_exon9 | Brassica napus | exon | A01_BnaDARv10 2175822..2175887 + |
| A01p04790.1_BnaDARv10_exon10 | A01p04790.1_BnaDARv10_exon10 | Brassica napus | exon | A01_BnaDARv10 2175978..2176211 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340481.1370502-CDS-A01_BnaDARv10:2173460..2173880 | 1626340481.1370502-CDS-A01_BnaDARv10:2173460..2173880 | Brassica napus | CDS | A01_BnaDARv10 2173461..2173880 + |
| 1626340481.1431816-CDS-A01_BnaDARv10:2173985..2174083 | 1626340481.1431816-CDS-A01_BnaDARv10:2173985..2174083 | Brassica napus | CDS | A01_BnaDARv10 2173986..2174083 + |
| 1626340481.1491184-CDS-A01_BnaDARv10:2174158..2174204 | 1626340481.1491184-CDS-A01_BnaDARv10:2174158..2174204 | Brassica napus | CDS | A01_BnaDARv10 2174159..2174204 + |
| 1626340481.1552472-CDS-A01_BnaDARv10:2174329..2174412 | 1626340481.1552472-CDS-A01_BnaDARv10:2174329..2174412 | Brassica napus | CDS | A01_BnaDARv10 2174330..2174412 + |
| 1626340481.1616952-CDS-A01_BnaDARv10:2174513..2174559 | 1626340481.1616952-CDS-A01_BnaDARv10:2174513..2174559 | Brassica napus | CDS | A01_BnaDARv10 2174514..2174559 + |
| 1626340481.1678445-CDS-A01_BnaDARv10:2174972..2175053 | 1626340481.1678445-CDS-A01_BnaDARv10:2174972..2175053 | Brassica napus | CDS | A01_BnaDARv10 2174973..2175053 + |
| 1626340481.1739593-CDS-A01_BnaDARv10:2175331..2175391 | 1626340481.1739593-CDS-A01_BnaDARv10:2175331..2175391 | Brassica napus | CDS | A01_BnaDARv10 2175332..2175391 + |
| 1626340481.1800702-CDS-A01_BnaDARv10:2175513..2175546 | 1626340481.1800702-CDS-A01_BnaDARv10:2175513..2175546 | Brassica napus | CDS | A01_BnaDARv10 2175514..2175546 + |
| 1626340481.1861296-CDS-A01_BnaDARv10:2175821..2175887 | 1626340481.1861296-CDS-A01_BnaDARv10:2175821..2175887 | Brassica napus | CDS | A01_BnaDARv10 2175822..2175887 + |
| 1626340481.192021-CDS-A01_BnaDARv10:2175977..2176025 | 1626340481.192021-CDS-A01_BnaDARv10:2175977..2176025 | Brassica napus | CDS | A01_BnaDARv10 2175978..2176025 + |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340481.198294-three_prime_UTR-A01_BnaDARv10:2176025..2176211 | 1626340481.198294-three_prime_UTR-A01_BnaDARv10:2176025..2176211 | Brassica napus | three_prime_UTR | A01_BnaDARv10 2176026..2176211 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >A01p04790.1_BnaDARv10-RA ID=A01p04790.1_BnaDARv10-RA|Name=A01p04790.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1197bp|location=Sequence derived from alignment at A01_BnaDARv10:2173431..2176211+ (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.
TGCTCTCAACTTCTCTCTCTCTAAGCTTCAATGGCTTTCTCATTCTCCTT
AACTTCGCCTTCACCAAGCTCCACTCTTTCCTATTCCAACATCCACCAAT
TCCCGAACCCGTCTTCTTCATTTCCCGTCTCGTTATCTGTCTCTTCCCCG
AGCAACACTCGCCGCCGTCTTCGTCTCTCCATCACCTCCGCGTTGAATCC
GCAGACGAAGAAAGCTTCAACGGGTAGTGGTGGGACCAGCAAGAAACGGA
AGAAGAAGGGTAAAAGTGTCAATCTTGAGGAGAATTGGAAATTGAGAGAA
GCAGATGCTGTTCTTGAGGAGGAAGATTATGATGATGATGATGGTTCTCT
TGCGAACTGTCCTCCTACCATACCTAAGCCACCTGCTGGGTTCGTTATTG
ATGAGACTGGTAGAGTTCTTATGGCTTCTAAGAAGCGAATCGCTACTGTG
GTTGATCCGACAAACAATAGTCCTTTGGATTGTGTAATAAGAAGAGTGTT
TACTAGTAGTAAAGGAGAGGATTGTATGCTTCTTTGCCCTGTTGATACGC
CAGTTCAGATTTTGAAGAGCACAAACATAGATGGATGGTCAGCTGTCAGT
GATGAAGAGGTTGAATCTCTTCTTCCTGCTGCTGCTTATGCTCTTGCAAA
GATCCATATGCATCTTGTACACAGCGGATTCTGTTACACTGCAAGGGGAG
GCTTTTGCTACACTGAAGATAATAAACATCAACTATTTGCAGATGATGGC
CAAGATGTTGAAGGTTTGCCAACTGAAGGGGTTGAGATTACATGTTTTCA
TCTGGATGGATCACACTATATGGTTTACACGCCTTCAGATCCACTTCTCT
TTGTTGCTGCTAAGGATCCGAATGGGCTACTGCAAATTGCTGATGATGAG
CTCCTAGACGACCCAGCTGTGATCAGCGCCATAGACGAGGAAACCGAATT
CAATGCATTGGTGGAGGAAGAGGCGGCTCTTCTGGAATCATTGCTTGGGG
AAGAAATTTAAAAGCTTTTCATAGAAAGACCTACTTACTTAGCTTTCTTT
CTTTCTTTCTTTTTATGTTCCATATCAATGCTATTCCTTATGATGTTTTC
CTGTTTATCATTAAAAAAATGTTTTTCTATTGCAAATCTTTATCTTTGGG
AATGGAATGTTAATTGAGTTTGATCATTTGTATGCAAAAGTCGATGT back to topprotein sequence of A01p04790.1_BnaDARv10-RA >A01p04790.1_BnaDARv10-PA ID=A01p04790.1_BnaDARv10-PA|Name=A01p04790.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=327bp
MAFSFSLTSPSPSSTLSYSNIHQFPNPSSSFPVSLSVSSPSNTRRRLRLS
ITSALNPQTKKASTGSGGTSKKRKKKGKSVNLEENWKLREADAVLEEEDY
DDDDGSLANCPPTIPKPPAGFVIDETGRVLMASKKRIATVVDPTNNSPLD
CVIRRVFTSSKGEDCMLLCPVDTPVQILKSTNIDGWSAVSDEEVESLLPA
AAYALAKIHMHLVHSGFCYTARGGFCYTEDNKHQLFADDGQDVEGLPTEG
VEITCFHLDGSHYMVYTPSDPLLFVAAKDPNGLLQIADDELLDDPAVISA
IDEETEFNALVEEEAALLESLLGEEI. back to topmRNA from alignment at A01_BnaDARv10:2173431..2176211+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >A01p04790.1_BnaDARv10-RA ID=A01p04790.1_BnaDARv10-RA|Name=A01p04790.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=2781bp|location=Sequence derived from alignment at A01_BnaDARv10:2173431..2176211+ (Brassica napus)
TGCTCTCAACTTCTCTCTCTCTAAGCTTCAATGGCTTTCTCATTCTCCTT
AACTTCGCCTTCACCAAGCTCCACTCTTTCCTATTCCAACATCCACCAAT
TCCCGAACCCGTCTTCTTCATTTCCCGTCTCGTTATCTGTCTCTTCCCCG
AGCAACACTCGCCGCCGTCTTCGTCTCTCCATCACCTCCGCGTTGAATCC
GCAGACGAAGAAAGCTTCAACGGGTAGTGGTGGGACCAGCAAGAAACGGA
AGAAGAAGGGTAAAAGTGTCAATCTTGAGGAGAATTGGAAATTGAGAGAA
GCAGATGCTGTTCTTGAGGAGGAAGATTATGATGATGATGATGGTTCTCT
TGCGAACTGTCCTCCTACCATACCTAAGCCACCTGCTGGGTTCGTTATTG
ATGAGACTGGTAGAGTTCTTATGGCTTCTAAGAAGCGAATCGCTACTGTG
GTATAAGTTACTTCTTTCCTTTCCCTATAAAGCTTCACTCTTTGGTAGTT
ATGTGTAAGGAAAGTAGAAATTTTTAAGTGGCTTTTGTTGTTGTGAATGA
GACAGGTTGATCCGACAAACAATAGTCCTTTGGATTGTGTAATAAGAAGA
GTGTTTACTAGTAGTAAAGGAGAGGATTGTATGCTTCTTTGCCCTGTTGA
TACGTGAGTCAATCTTTTGTTTCTTCTCGACTTCTCTTATCATGTTATTG
CCTGATTGATGTTTGTTTCTTGTTTCAGGCCAGTTCAGATTTTGAAGAGC
ACAAACATAGATGGATGGTCAGCTGTAAGTTTTCTCCTTCATTCACTTCC
ATTTTTTGCTTCAGAAGAGAGATACCTTTTGTATAAGAGTCATTTTCTAG
ATTTAAATAGCTTTGTTTTTTATTATCTGGATGTTTCCAACTTTTGTAGG
TCAGTGATGAAGAGGTTGAATCTCTTCTTCCTGCTGCTGCTTATGCTCTT
GCAAAGATCCATATGCATCTTGTACACAGCGGGTAGGAGGACCCTGCCCT
GTTTCAAGAATAATTCAAGCTTTATGTTTCCTATCTTTCTTTGTGTCTGA
TACAATCTTATGGGTTTATCACTTGTAAATCAGATTCTGTTACACTGCAA
GGGGAGGCTTTTGCTACACTGAAGATAATGTCTTCGATTTTCGCACAGGC
AACAAGCACTTTCTTTTCATATCTATGCATGACTACAAGTCTTCTGATTA
ATATTTTCTAGCATCTGCTCTATATGAGCACACACTAAATGATCTTGGCT
TCATATTTACTGTGAATATATAGGTTATCATGCTTTCATAAATGATTGAA
TTTTGGTTAAATTATAAAGTTGTGAGATTACAACGGATAATAGGTAGAAA
ACCTCTGAACTTGCATGGTCCTCTGAATTTTAGTAAAACGTCTGTGGTTA
TCTCATGTCTGTGTTCGTCCTCTCATGTTTAGTTCTTGTTATCTACTTCA
CTCTAAGTGAGAGGTGTTTTTACGGGTCTGCTCATAGGCTTATATAGCTT
ATTGTTGTGTGTCCTACTTTGCTCATGTCATTAAATGTGTAGAAACATCA
ACTATTTGCAGATGATGGCCAAGATGTTGAAGGTTTGCCAACTGAAGGGG
TTGAGATTACATGTTTTCATCTGGTATATACCATTTGCTTTTTGCATTTT
TCTTATTGATAGTTTGAGGTGTCTTTTGAGATGTTATGAATGTAGCATAA
TTTAAATGAGTGAACACGACATTCAGATTCTCAATTTGGCATAACAAGGT
CTGAAACCAAATTTTGCATTTGCATTGTGGATCCAAATTTGAACACCACT
TTATAATTGTGAATTGAATTGTGTAGAAAGAGAATCTTCAAAGCTATGAT
ATGCCTTTTTTTTTTGTTTTTACGTTGTCTAAACATGAATTGTGAAATCA
GGATGGATCACACTATATGGTTTACACGCCTTCAGATCCACTTCTCTTTG
TTGCTGCTAAGGTAAGTTTGTAAACTTGCAGTTGCTTATAAAACTTTTAC
CAAGCCGTAGCTTTTTTCATGTAAAAGAAAAATAAATGGATGAGAAACAA
GAGAAATAATAATGGCAACTCCATCTATTGCAGGATCCGAATGGGCTACT
GCAAATTGCTGATGATGTAAGTGAACCTCTCTGTTATTTACTTACAGAGT
CGTTTGGGTTACTAGAAAGGTGTTGAGCAAAAGCTGCACTACTAGATGTT
GACATTCTGTGATTTCAAAAATTGATCCAAGTATTTGATAGGCCTTAGCA
AACATAGTGTGATGTTTCTGGTAAAATTAGAGAGCAAAAGGAAACAGTAC
TAGGTTCTTGGTTCTTGGTTACTTTTGGTTCTCTGGTTTTAGAAGGGAGA
ATTGCTTCTTATCTAACACATGTATGCCAATGGGGTTACAGGAGCTCCTA
GACGACCCAGCTGTGATCAGCGCCATAGACGAGGAAACCGAATTCAATGC
ATTGGTGGTACGTACATACACATCAACAAACATATTTAATTGTTTTAAGA
AAAAAAGAAAGTGATGTTAAATGTGGTAAACTGGTTGTTTTGGGCAGGAG
GAAGAGGCGGCTCTTCTGGAATCATTGCTTGGGGAAGAAATTTAAAAGCT
TTTCATAGAAAGACCTACTTACTTAGCTTTCTTTCTTTCTTTCTTTTTAT
GTTCCATATCAATGCTATTCCTTATGATGTTTTCCTGTTTATCATTAAAA
AAATGTTTTTCTATTGCAAATCTTTATCTTTGGGAATGGAATGTTAATTG
AGTTTGATCATTTGTATGCAAAAGTCGATGT back to topCoding sequence (CDS) from alignment at A01_BnaDARv10:2173431..2176211+ >A01p04790.1_BnaDARv10-RA ID=A01p04790.1_BnaDARv10-RA|Name=A01p04790.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=981bp|location=Sequence derived from alignment at A01_BnaDARv10:2173431..2176211+ (Brassica napus)
ATGGCTTTCTCATTCTCCTTAACTTCGCCTTCACCAAGCTCCACTCTTTC
CTATTCCAACATCCACCAATTCCCGAACCCGTCTTCTTCATTTCCCGTCT
CGTTATCTGTCTCTTCCCCGAGCAACACTCGCCGCCGTCTTCGTCTCTCC
ATCACCTCCGCGTTGAATCCGCAGACGAAGAAAGCTTCAACGGGTAGTGG
TGGGACCAGCAAGAAACGGAAGAAGAAGGGTAAAAGTGTCAATCTTGAGG
AGAATTGGAAATTGAGAGAAGCAGATGCTGTTCTTGAGGAGGAAGATTAT
GATGATGATGATGGTTCTCTTGCGAACTGTCCTCCTACCATACCTAAGCC
ACCTGCTGGGTTCGTTATTGATGAGACTGGTAGAGTTCTTATGGCTTCTA
AGAAGCGAATCGCTACTGTGGTTGATCCGACAAACAATAGTCCTTTGGAT
TGTGTAATAAGAAGAGTGTTTACTAGTAGTAAAGGAGAGGATTGTATGCT
TCTTTGCCCTGTTGATACGCCAGTTCAGATTTTGAAGAGCACAAACATAG
ATGGATGGTCAGCTGTCAGTGATGAAGAGGTTGAATCTCTTCTTCCTGCT
GCTGCTTATGCTCTTGCAAAGATCCATATGCATCTTGTACACAGCGGATT
CTGTTACACTGCAAGGGGAGGCTTTTGCTACACTGAAGATAATAAACATC
AACTATTTGCAGATGATGGCCAAGATGTTGAAGGTTTGCCAACTGAAGGG
GTTGAGATTACATGTTTTCATCTGGATGGATCACACTATATGGTTTACAC
GCCTTCAGATCCACTTCTCTTTGTTGCTGCTAAGGATCCGAATGGGCTAC
TGCAAATTGCTGATGATGAGCTCCTAGACGACCCAGCTGTGATCAGCGCC
ATAGACGAGGAAACCGAATTCAATGCATTGGTGGAGGAAGAGGCGGCTCT
TCTGGAATCATTGCTTGGGGAAGAAATTTAA back to top
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