A01p04790.1_BnaDARv10-RA (mRNA) Brassica napus

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	A01p04790.1_BnaDARv10-RA
Unique Name	A01p04790.1_BnaDARv10-RA
Type	mRNA
Organism	Brassica napus (cv. Darmor-bzh, rapeseed)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
A01p04790.1_BnaDARv10	A01p04790.1_BnaDARv10	Brassica napus	gene	A01_BnaDARv10 2173431..2176211 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1626340481.1299686-five_prime_UTR-A01_BnaDARv10:2173430..2173460	1626340481.1299686-five_prime_UTR-A01_BnaDARv10:2173430..2173460	Brassica napus	five_prime_UTR	A01_BnaDARv10 2173431..2173460 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
A01p04790.1_BnaDARv10_exon1	A01p04790.1_BnaDARv10_exon1	Brassica napus	exon	A01_BnaDARv10 2173431..2173880 +
A01p04790.1_BnaDARv10_exon2	A01p04790.1_BnaDARv10_exon2	Brassica napus	exon	A01_BnaDARv10 2173986..2174083 +
A01p04790.1_BnaDARv10_exon3	A01p04790.1_BnaDARv10_exon3	Brassica napus	exon	A01_BnaDARv10 2174159..2174204 +
A01p04790.1_BnaDARv10_exon4	A01p04790.1_BnaDARv10_exon4	Brassica napus	exon	A01_BnaDARv10 2174330..2174412 +
A01p04790.1_BnaDARv10_exon5	A01p04790.1_BnaDARv10_exon5	Brassica napus	exon	A01_BnaDARv10 2174514..2174559 +
A01p04790.1_BnaDARv10_exon6	A01p04790.1_BnaDARv10_exon6	Brassica napus	exon	A01_BnaDARv10 2174973..2175053 +
A01p04790.1_BnaDARv10_exon7	A01p04790.1_BnaDARv10_exon7	Brassica napus	exon	A01_BnaDARv10 2175332..2175391 +
A01p04790.1_BnaDARv10_exon8	A01p04790.1_BnaDARv10_exon8	Brassica napus	exon	A01_BnaDARv10 2175514..2175546 +
A01p04790.1_BnaDARv10_exon9	A01p04790.1_BnaDARv10_exon9	Brassica napus	exon	A01_BnaDARv10 2175822..2175887 +
A01p04790.1_BnaDARv10_exon10	A01p04790.1_BnaDARv10_exon10	Brassica napus	exon	A01_BnaDARv10 2175978..2176211 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1626340481.1370502-CDS-A01_BnaDARv10:2173460..2173880	1626340481.1370502-CDS-A01_BnaDARv10:2173460..2173880	Brassica napus	CDS	A01_BnaDARv10 2173461..2173880 +
1626340481.1431816-CDS-A01_BnaDARv10:2173985..2174083	1626340481.1431816-CDS-A01_BnaDARv10:2173985..2174083	Brassica napus	CDS	A01_BnaDARv10 2173986..2174083 +
1626340481.1491184-CDS-A01_BnaDARv10:2174158..2174204	1626340481.1491184-CDS-A01_BnaDARv10:2174158..2174204	Brassica napus	CDS	A01_BnaDARv10 2174159..2174204 +
1626340481.1552472-CDS-A01_BnaDARv10:2174329..2174412	1626340481.1552472-CDS-A01_BnaDARv10:2174329..2174412	Brassica napus	CDS	A01_BnaDARv10 2174330..2174412 +
1626340481.1616952-CDS-A01_BnaDARv10:2174513..2174559	1626340481.1616952-CDS-A01_BnaDARv10:2174513..2174559	Brassica napus	CDS	A01_BnaDARv10 2174514..2174559 +
1626340481.1678445-CDS-A01_BnaDARv10:2174972..2175053	1626340481.1678445-CDS-A01_BnaDARv10:2174972..2175053	Brassica napus	CDS	A01_BnaDARv10 2174973..2175053 +
1626340481.1739593-CDS-A01_BnaDARv10:2175331..2175391	1626340481.1739593-CDS-A01_BnaDARv10:2175331..2175391	Brassica napus	CDS	A01_BnaDARv10 2175332..2175391 +
1626340481.1800702-CDS-A01_BnaDARv10:2175513..2175546	1626340481.1800702-CDS-A01_BnaDARv10:2175513..2175546	Brassica napus	CDS	A01_BnaDARv10 2175514..2175546 +
1626340481.1861296-CDS-A01_BnaDARv10:2175821..2175887	1626340481.1861296-CDS-A01_BnaDARv10:2175821..2175887	Brassica napus	CDS	A01_BnaDARv10 2175822..2175887 +
1626340481.192021-CDS-A01_BnaDARv10:2175977..2176025	1626340481.192021-CDS-A01_BnaDARv10:2175977..2176025	Brassica napus	CDS	A01_BnaDARv10 2175978..2176025 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1626340481.198294-three_prime_UTR-A01_BnaDARv10:2176025..2176211	1626340481.198294-three_prime_UTR-A01_BnaDARv10:2176025..2176211	Brassica napus	three_prime_UTR	A01_BnaDARv10 2176026..2176211 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
A01p04790.1_BnaDARv10-RA	A01p04790.1_BnaDARv10-PA	Brassica napus	polypeptide	A01_BnaDARv10 2173461..2176025 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at A01_BnaDARv10:2173431..2176211+
coding sequence from alignment at A01_BnaDARv10:2173431..2176211+

spliced messenger RNA

>A01p04790.1_BnaDARv10-RA ID=A01p04790.1_BnaDARv10-RA|Name=A01p04790.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1197bp|location=Sequence derived from alignment at A01_BnaDARv10:2173431..2176211+ (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.  
TGCTCTCAACTTCTCTCTCTCTAAGCTTCAATGGCTTTCTCATTCTCCTT
AACTTCGCCTTCACCAAGCTCCACTCTTTCCTATTCCAACATCCACCAAT
TCCCGAACCCGTCTTCTTCATTTCCCGTCTCGTTATCTGTCTCTTCCCCG
AGCAACACTCGCCGCCGTCTTCGTCTCTCCATCACCTCCGCGTTGAATCC
GCAGACGAAGAAAGCTTCAACGGGTAGTGGTGGGACCAGCAAGAAACGGA
AGAAGAAGGGTAAAAGTGTCAATCTTGAGGAGAATTGGAAATTGAGAGAA
GCAGATGCTGTTCTTGAGGAGGAAGATTATGATGATGATGATGGTTCTCT
TGCGAACTGTCCTCCTACCATACCTAAGCCACCTGCTGGGTTCGTTATTG
ATGAGACTGGTAGAGTTCTTATGGCTTCTAAGAAGCGAATCGCTACTGTG
GTTGATCCGACAAACAATAGTCCTTTGGATTGTGTAATAAGAAGAGTGTT
TACTAGTAGTAAAGGAGAGGATTGTATGCTTCTTTGCCCTGTTGATACGC
CAGTTCAGATTTTGAAGAGCACAAACATAGATGGATGGTCAGCTGTCAGT
GATGAAGAGGTTGAATCTCTTCTTCCTGCTGCTGCTTATGCTCTTGCAAA
GATCCATATGCATCTTGTACACAGCGGATTCTGTTACACTGCAAGGGGAG
GCTTTTGCTACACTGAAGATAATAAACATCAACTATTTGCAGATGATGGC
CAAGATGTTGAAGGTTTGCCAACTGAAGGGGTTGAGATTACATGTTTTCA
TCTGGATGGATCACACTATATGGTTTACACGCCTTCAGATCCACTTCTCT
TTGTTGCTGCTAAGGATCCGAATGGGCTACTGCAAATTGCTGATGATGAG
CTCCTAGACGACCCAGCTGTGATCAGCGCCATAGACGAGGAAACCGAATT
CAATGCATTGGTGGAGGAAGAGGCGGCTCTTCTGGAATCATTGCTTGGGG
AAGAAATTTAAAAGCTTTTCATAGAAAGACCTACTTACTTAGCTTTCTTT
CTTTCTTTCTTTTTATGTTCCATATCAATGCTATTCCTTATGATGTTTTC
CTGTTTATCATTAAAAAAATGTTTTTCTATTGCAAATCTTTATCTTTGGG
AATGGAATGTTAATTGAGTTTGATCATTTGTATGCAAAAGTCGATGT

protein sequence of A01p04790.1_BnaDARv10-RA

>A01p04790.1_BnaDARv10-PA ID=A01p04790.1_BnaDARv10-PA|Name=A01p04790.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=327bp
MAFSFSLTSPSPSSTLSYSNIHQFPNPSSSFPVSLSVSSPSNTRRRLRLS
ITSALNPQTKKASTGSGGTSKKRKKKGKSVNLEENWKLREADAVLEEEDY
DDDDGSLANCPPTIPKPPAGFVIDETGRVLMASKKRIATVVDPTNNSPLD
CVIRRVFTSSKGEDCMLLCPVDTPVQILKSTNIDGWSAVSDEEVESLLPA
AAYALAKIHMHLVHSGFCYTARGGFCYTEDNKHQLFADDGQDVEGLPTEG
VEITCFHLDGSHYMVYTPSDPLLFVAAKDPNGLLQIADDELLDDPAVISA
IDEETEFNALVEEEAALLESLLGEEI.

mRNA from alignment at A01_BnaDARv10:2173431..2176211+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>A01p04790.1_BnaDARv10-RA ID=A01p04790.1_BnaDARv10-RA|Name=A01p04790.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=2781bp|location=Sequence derived from alignment at A01_BnaDARv10:2173431..2176211+ (Brassica napus)
TGCTCTCAACTTCTCTCTCTCTAAGCTTCAATGGCTTTCTCATTCTCCTT
AACTTCGCCTTCACCAAGCTCCACTCTTTCCTATTCCAACATCCACCAAT
TCCCGAACCCGTCTTCTTCATTTCCCGTCTCGTTATCTGTCTCTTCCCCG
AGCAACACTCGCCGCCGTCTTCGTCTCTCCATCACCTCCGCGTTGAATCC
GCAGACGAAGAAAGCTTCAACGGGTAGTGGTGGGACCAGCAAGAAACGGA
AGAAGAAGGGTAAAAGTGTCAATCTTGAGGAGAATTGGAAATTGAGAGAA
GCAGATGCTGTTCTTGAGGAGGAAGATTATGATGATGATGATGGTTCTCT
TGCGAACTGTCCTCCTACCATACCTAAGCCACCTGCTGGGTTCGTTATTG
ATGAGACTGGTAGAGTTCTTATGGCTTCTAAGAAGCGAATCGCTACTGTG
GTATAAGTTACTTCTTTCCTTTCCCTATAAAGCTTCACTCTTTGGTAGTT
ATGTGTAAGGAAAGTAGAAATTTTTAAGTGGCTTTTGTTGTTGTGAATGA
GACAGGTTGATCCGACAAACAATAGTCCTTTGGATTGTGTAATAAGAAGA
GTGTTTACTAGTAGTAAAGGAGAGGATTGTATGCTTCTTTGCCCTGTTGA
TACGTGAGTCAATCTTTTGTTTCTTCTCGACTTCTCTTATCATGTTATTG
CCTGATTGATGTTTGTTTCTTGTTTCAGGCCAGTTCAGATTTTGAAGAGC
ACAAACATAGATGGATGGTCAGCTGTAAGTTTTCTCCTTCATTCACTTCC
ATTTTTTGCTTCAGAAGAGAGATACCTTTTGTATAAGAGTCATTTTCTAG
ATTTAAATAGCTTTGTTTTTTATTATCTGGATGTTTCCAACTTTTGTAGG
TCAGTGATGAAGAGGTTGAATCTCTTCTTCCTGCTGCTGCTTATGCTCTT
GCAAAGATCCATATGCATCTTGTACACAGCGGGTAGGAGGACCCTGCCCT
GTTTCAAGAATAATTCAAGCTTTATGTTTCCTATCTTTCTTTGTGTCTGA
TACAATCTTATGGGTTTATCACTTGTAAATCAGATTCTGTTACACTGCAA
GGGGAGGCTTTTGCTACACTGAAGATAATGTCTTCGATTTTCGCACAGGC
AACAAGCACTTTCTTTTCATATCTATGCATGACTACAAGTCTTCTGATTA
ATATTTTCTAGCATCTGCTCTATATGAGCACACACTAAATGATCTTGGCT
TCATATTTACTGTGAATATATAGGTTATCATGCTTTCATAAATGATTGAA
TTTTGGTTAAATTATAAAGTTGTGAGATTACAACGGATAATAGGTAGAAA
ACCTCTGAACTTGCATGGTCCTCTGAATTTTAGTAAAACGTCTGTGGTTA
TCTCATGTCTGTGTTCGTCCTCTCATGTTTAGTTCTTGTTATCTACTTCA
CTCTAAGTGAGAGGTGTTTTTACGGGTCTGCTCATAGGCTTATATAGCTT
ATTGTTGTGTGTCCTACTTTGCTCATGTCATTAAATGTGTAGAAACATCA
ACTATTTGCAGATGATGGCCAAGATGTTGAAGGTTTGCCAACTGAAGGGG
TTGAGATTACATGTTTTCATCTGGTATATACCATTTGCTTTTTGCATTTT
TCTTATTGATAGTTTGAGGTGTCTTTTGAGATGTTATGAATGTAGCATAA
TTTAAATGAGTGAACACGACATTCAGATTCTCAATTTGGCATAACAAGGT
CTGAAACCAAATTTTGCATTTGCATTGTGGATCCAAATTTGAACACCACT
TTATAATTGTGAATTGAATTGTGTAGAAAGAGAATCTTCAAAGCTATGAT
ATGCCTTTTTTTTTTGTTTTTACGTTGTCTAAACATGAATTGTGAAATCA
GGATGGATCACACTATATGGTTTACACGCCTTCAGATCCACTTCTCTTTG
TTGCTGCTAAGGTAAGTTTGTAAACTTGCAGTTGCTTATAAAACTTTTAC
CAAGCCGTAGCTTTTTTCATGTAAAAGAAAAATAAATGGATGAGAAACAA
GAGAAATAATAATGGCAACTCCATCTATTGCAGGATCCGAATGGGCTACT
GCAAATTGCTGATGATGTAAGTGAACCTCTCTGTTATTTACTTACAGAGT
CGTTTGGGTTACTAGAAAGGTGTTGAGCAAAAGCTGCACTACTAGATGTT
GACATTCTGTGATTTCAAAAATTGATCCAAGTATTTGATAGGCCTTAGCA
AACATAGTGTGATGTTTCTGGTAAAATTAGAGAGCAAAAGGAAACAGTAC
TAGGTTCTTGGTTCTTGGTTACTTTTGGTTCTCTGGTTTTAGAAGGGAGA
ATTGCTTCTTATCTAACACATGTATGCCAATGGGGTTACAGGAGCTCCTA
GACGACCCAGCTGTGATCAGCGCCATAGACGAGGAAACCGAATTCAATGC
ATTGGTGGTACGTACATACACATCAACAAACATATTTAATTGTTTTAAGA
AAAAAAGAAAGTGATGTTAAATGTGGTAAACTGGTTGTTTTGGGCAGGAG
GAAGAGGCGGCTCTTCTGGAATCATTGCTTGGGGAAGAAATTTAAAAGCT
TTTCATAGAAAGACCTACTTACTTAGCTTTCTTTCTTTCTTTCTTTTTAT
GTTCCATATCAATGCTATTCCTTATGATGTTTTCCTGTTTATCATTAAAA
AAATGTTTTTCTATTGCAAATCTTTATCTTTGGGAATGGAATGTTAATTG
AGTTTGATCATTTGTATGCAAAAGTCGATGT

Coding sequence (CDS) from alignment at A01_BnaDARv10:2173431..2176211+

>A01p04790.1_BnaDARv10-RA ID=A01p04790.1_BnaDARv10-RA|Name=A01p04790.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=981bp|location=Sequence derived from alignment at A01_BnaDARv10:2173431..2176211+ (Brassica napus)
ATGGCTTTCTCATTCTCCTTAACTTCGCCTTCACCAAGCTCCACTCTTTC
CTATTCCAACATCCACCAATTCCCGAACCCGTCTTCTTCATTTCCCGTCT
CGTTATCTGTCTCTTCCCCGAGCAACACTCGCCGCCGTCTTCGTCTCTCC
ATCACCTCCGCGTTGAATCCGCAGACGAAGAAAGCTTCAACGGGTAGTGG
TGGGACCAGCAAGAAACGGAAGAAGAAGGGTAAAAGTGTCAATCTTGAGG
AGAATTGGAAATTGAGAGAAGCAGATGCTGTTCTTGAGGAGGAAGATTAT
GATGATGATGATGGTTCTCTTGCGAACTGTCCTCCTACCATACCTAAGCC
ACCTGCTGGGTTCGTTATTGATGAGACTGGTAGAGTTCTTATGGCTTCTA
AGAAGCGAATCGCTACTGTGGTTGATCCGACAAACAATAGTCCTTTGGAT
TGTGTAATAAGAAGAGTGTTTACTAGTAGTAAAGGAGAGGATTGTATGCT
TCTTTGCCCTGTTGATACGCCAGTTCAGATTTTGAAGAGCACAAACATAG
ATGGATGGTCAGCTGTCAGTGATGAAGAGGTTGAATCTCTTCTTCCTGCT
GCTGCTTATGCTCTTGCAAAGATCCATATGCATCTTGTACACAGCGGATT
CTGTTACACTGCAAGGGGAGGCTTTTGCTACACTGAAGATAATAAACATC
AACTATTTGCAGATGATGGCCAAGATGTTGAAGGTTTGCCAACTGAAGGG
GTTGAGATTACATGTTTTCATCTGGATGGATCACACTATATGGTTTACAC
GCCTTCAGATCCACTTCTCTTTGTTGCTGCTAAGGATCCGAATGGGCTAC
TGCAAATTGCTGATGATGAGCTCCTAGACGACCCAGCTGTGATCAGCGCC
ATAGACGAGGAAACCGAATTCAATGCATTGGTGGAGGAAGAGGCGGCTCT
TCTGGAATCATTGCTTGGGGAAGAAATTTAA