A01p03270.1_BnaDARv10-RA (mRNA) Brassica napus

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	A01p03270.1_BnaDARv10-RA
Unique Name	A01p03270.1_BnaDARv10-RA
Type	mRNA
Organism	Brassica napus (cv. Darmor-bzh, rapeseed)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
A01p03270.1_BnaDARv10	A01p03270.1_BnaDARv10	Brassica napus	gene	A01_BnaDARv10 1508194..1510804 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1626340463.2494617-CDS-A01_BnaDARv10:1508193..1508437	1626340463.2494617-CDS-A01_BnaDARv10:1508193..1508437	Brassica napus	CDS	A01_BnaDARv10 1508194..1508437 +
1626340463.2564912-CDS-A01_BnaDARv10:1508840..1509545	1626340463.2564912-CDS-A01_BnaDARv10:1508840..1509545	Brassica napus	CDS	A01_BnaDARv10 1508841..1509545 +
1626340463.2624032-CDS-A01_BnaDARv10:1509754..1509951	1626340463.2624032-CDS-A01_BnaDARv10:1509754..1509951	Brassica napus	CDS	A01_BnaDARv10 1509755..1509951 +
1626340463.2682374-CDS-A01_BnaDARv10:1510013..1510127	1626340463.2682374-CDS-A01_BnaDARv10:1510013..1510127	Brassica napus	CDS	A01_BnaDARv10 1510014..1510127 +
1626340463.2742414-CDS-A01_BnaDARv10:1510276..1510331	1626340463.2742414-CDS-A01_BnaDARv10:1510276..1510331	Brassica napus	CDS	A01_BnaDARv10 1510277..1510331 +
1626340463.280352-CDS-A01_BnaDARv10:1510485..1510572	1626340463.280352-CDS-A01_BnaDARv10:1510485..1510572	Brassica napus	CDS	A01_BnaDARv10 1510486..1510572 +
1626340463.2863486-CDS-A01_BnaDARv10:1510655..1510804	1626340463.2863486-CDS-A01_BnaDARv10:1510655..1510804	Brassica napus	CDS	A01_BnaDARv10 1510656..1510804 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
A01p03270.1_BnaDARv10_exon1	A01p03270.1_BnaDARv10_exon1	Brassica napus	exon	A01_BnaDARv10 1508194..1508437 +
A01p03270.1_BnaDARv10_exon2	A01p03270.1_BnaDARv10_exon2	Brassica napus	exon	A01_BnaDARv10 1508841..1509545 +
A01p03270.1_BnaDARv10_exon3	A01p03270.1_BnaDARv10_exon3	Brassica napus	exon	A01_BnaDARv10 1509755..1509951 +
A01p03270.1_BnaDARv10_exon4	A01p03270.1_BnaDARv10_exon4	Brassica napus	exon	A01_BnaDARv10 1510014..1510127 +
A01p03270.1_BnaDARv10_exon5	A01p03270.1_BnaDARv10_exon5	Brassica napus	exon	A01_BnaDARv10 1510277..1510331 +
A01p03270.1_BnaDARv10_exon6	A01p03270.1_BnaDARv10_exon6	Brassica napus	exon	A01_BnaDARv10 1510486..1510572 +
A01p03270.1_BnaDARv10_exon7	A01p03270.1_BnaDARv10_exon7	Brassica napus	exon	A01_BnaDARv10 1510656..1510804 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
A01p03270.1_BnaDARv10-RA	A01p03270.1_BnaDARv10-PA	Brassica napus	polypeptide	A01_BnaDARv10 1508194..1510804 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at A01_BnaDARv10:1508194..1510804+
coding sequence from alignment at A01_BnaDARv10:1508194..1510804+

spliced messenger RNA

>A01p03270.1_BnaDARv10-RA ID=A01p03270.1_BnaDARv10-RA|Name=A01p03270.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1551bp|location=Sequence derived from alignment at A01_BnaDARv10:1508194..1510804+ (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGGTGAAGTAGACTCGAACGAGCCACAAACCGTCGTTGACGGTGG
CCAAGGAGGAGAGGTGGTTTCTGTGAACGTCAGGTGCTCCAACGGCTCCA
AATTTAGCGTGAGAACGAGCCTTGAATCAACCGTAGAGTCTTTCAAAGCT
CTGGTAGCTCAGAACTGCGACGTCCCAGCTAACCAGCAGCGCTTGATTTA
CAAGGGACGCATCCTCATGGATGATCACACTCTCCTGAGCTATGGTTTAC
AAGCGGATCAGGCTCTTCATATGGTTCGAGGCTCTGCACCTCCTGGGAGC
CAAACTATTACTCCACCTAGTGTTACTCGAGGGGTTGGTTCTAATGATAC
TCCAAACACTGGAGGAGAATCTTTGTTTGGATTTAATCCTTTAGGTAGTG
GAAATGCTATGCCTCCTGGGCTGTTTGGAGCTGCTGGACTTCCGGATCTC
CAGCAAGCACATCAACAGCTAGCTCAGAACCCAAACATGGTTAGAGACAT
GATGAACGCACCAACCATTCAGAATATTATGAACAACCCTGAGCTAATGA
GGACTTTGATAATGAGCAACCCTCAGATGCGCGAGCTTGTGGATCGCAAC
CCTGAGCTTGGACATATACTCAACGACCCGAGCGTCCTTAGGCAGAGCTT
GGAAGCTGCGAGGAACCCTGAGCTTATGCGCGAGATGACGCGGAGTACTG
ATAGGGCGATGAGTAATATTGAAGCTACTCCTGAGGGGTTTAACATGCTT
AGGAGGATGTATGAGAATGTCCAGGAACCGTTGATGAACGCTACAACAAA
CAATGCCGGTTCTAATCTATTTGCTACTACTCTCTTGGGGAATCAGGGAG
CTGCTTCTAACAATCCCATGACGACCAATGGTGAAACAGGCACAGGCAAT
GCTGTGCCGAATACAAATCCACTTCCAAATCCTTGGGATGCTGCAGGTGG
TCAGACAACTACGGCTGGAAGGACCAATTCAGGTGGGGATACTAGAGCCC
CTGGCCTTGGTGGACTAGGCATGCTAGGTGGGGATCCAACGGTTGGTGCT
ACACCAGATGCCTCTCAAATGAACCAGTTTCTGCAAAATCCAGCCATGTC
ACAGATGATGCAGAGCTTACTTTCCAATCCACAATATATGAATCAGATCA
TGAGTCTAAACCCACAACTCCAAAGCTTGATGGATTCAAGTCCTCAGGTG
AGGGAGATGATGCAGAATCCGGAGTTCCTTCGTATGCTTAGCTCCCCAGA
GACAATGCAGCAAATGATGAGTCTGCAGCAATCACTGTTATCTGGAAATA
GGAGTACGACCACAGGTAATAAAGGAGGGCTGGATTCATTGATGAGTATT
TTTGGCAGTCTTGGTGCTGGCGGCGGCTTGAGTGGTGCGAACCAGTCTAA
TGTACCTCCTGAGGAGCTATACGCCACACAATTGCAACAGCTAGAGGAAA
TGGGATTCTTTGACAGAGCAGAGAACATTAGGGCGTTGCGTGCAGCCAAC
GGCAACGTTAACGCTGCTGTAGAAAGACTCTTGGGGAGTATCGGCCAGTG
A

protein sequence of A01p03270.1_BnaDARv10-RA

>A01p03270.1_BnaDARv10-PA ID=A01p03270.1_BnaDARv10-PA|Name=A01p03270.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=517bp
MVGEVDSNEPQTVVDGGQGGEVVSVNVRCSNGSKFSVRTSLESTVESFKA
LVAQNCDVPANQQRLIYKGRILMDDHTLLSYGLQADQALHMVRGSAPPGS
QTITPPSVTRGVGSNDTPNTGGESLFGFNPLGSGNAMPPGLFGAAGLPDL
QQAHQQLAQNPNMVRDMMNAPTIQNIMNNPELMRTLIMSNPQMRELVDRN
PELGHILNDPSVLRQSLEAARNPELMREMTRSTDRAMSNIEATPEGFNML
RRMYENVQEPLMNATTNNAGSNLFATTLLGNQGAASNNPMTTNGETGTGN
AVPNTNPLPNPWDAAGGQTTTAGRTNSGGDTRAPGLGGLGMLGGDPTVGA
TPDASQMNQFLQNPAMSQMMQSLLSNPQYMNQIMSLNPQLQSLMDSSPQV
REMMQNPEFLRMLSSPETMQQMMSLQQSLLSGNRSTTTGNKGGLDSLMSI
FGSLGAGGGLSGANQSNVPPEELYATQLQQLEEMGFFDRAENIRALRAAN
GNVNAAVERLLGSIGQ.

mRNA from alignment at A01_BnaDARv10:1508194..1510804+

Legend: CDSpolypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>A01p03270.1_BnaDARv10-RA ID=A01p03270.1_BnaDARv10-RA|Name=A01p03270.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=2611bp|location=Sequence derived from alignment at A01_BnaDARv10:1508194..1510804+ (Brassica napus)
ATGGTTGGTGAAGTAGACTCGAACGAGCCACAAACCGTCGTTGACGGTGG
CCAAGGAGGAGAGGTGGTTTCTGTGAACGTCAGGTGCTCCAACGGCTCCA
AATTTAGCGTGAGAACGAGCCTTGAATCAACCGTAGAGTCTTTCAAAGCT
CTGGTAGCTCAGAACTGCGACGTCCCAGCTAACCAGCAGCGCTTGATTTA
CAAGGGACGCATCCTCATGGATGATCACACTCTCCTGAGCTATGGTAAAA
TCCTCAAAGACTTAACCTTTTGTGGTTTTCAATGAAAACTTTTCATACTC
AAGAAAACAATAAAAGAAGCTTCTTTGGGAATATAAAACAATTAAGATAT
TTCAGATTAATAGTAACCTGCGGGACAACTGCCGAATTTTATACGTAGAG
ATTTTTGTTACTTAACAGCGGTGAACCTTACTATCATCATGTAACCTCTA
GGTTTACAGACAGATCAAGCTGATCCAATAAAAATACATATATTTAAAAT
ATATGTAGAGATTTTTGTTACTATTAACTGAGGTGAACCTTAGTATCTTG
TAATCTTACAGACGGATCAAGTTGATCTAATAAAAATATATATTTAAAAT
ATATATAGAGATTTTTGTTAATATTAACTGTGGTGAACAACCTCTAGGTT
TACAAGCGGATCAGGCTCTTCATATGGTTCGAGGCTCTGCACCTCCTGGG
AGCCAAACTATTACTCCACCTAGTGTTACTCGAGGGGTTGGTTCTAATGA
TACTCCAAACACTGGAGGAGAATCTTTGTTTGGATTTAATCCTTTAGGTA
GTGGAAATGCTATGCCTCCTGGGCTGTTTGGAGCTGCTGGACTTCCGGAT
CTCCAGCAAGCACATCAACAGCTAGCTCAGAACCCAAACATGGTTAGAGA
CATGATGAACGCACCAACCATTCAGAATATTATGAACAACCCTGAGCTAA
TGAGGACTTTGATAATGAGCAACCCTCAGATGCGCGAGCTTGTGGATCGC
AACCCTGAGCTTGGACATATACTCAACGACCCGAGCGTCCTTAGGCAGAG
CTTGGAAGCTGCGAGGAACCCTGAGCTTATGCGCGAGATGACGCGGAGTA
CTGATAGGGCGATGAGTAATATTGAAGCTACTCCTGAGGGGTTTAACATG
CTTAGGAGGATGTATGAGAATGTCCAGGAACCGTTGATGAACGCTACAAC
AAACAATGCCGGTTCTAATCTATTTGCTACTACTCTCTTGGGGAATCAGG
GAGCTGCTTCTAACAATCCCATGACGACCAATGGTGAAACAGGCACAGGC
AATGCTGTGCCGAATACAAATCCACTTCCAAATCCTTGGGATGCTGCAGG
TGGTATGAAACTATACTCTTCTGCTTAGTACTTGTTGGGTATAACGGAAA
CTATAGTTTACACACTAGTTCAGGAACAATGTGATATAGTAATTGGTTGT
TGTAGTTCTCACAGTTCCTTGTCTTTAATGGTTAAGTAAACAACTTTTTT
TGTCAGCACTTTGTATAATGTAATAAAGATGACTGAACGTTTCTGTGCTC
TTACTTGACAGGTCAGACAACTACGGCTGGAAGGACCAATTCAGGTGGGG
ATACTAGAGCCCCTGGCCTTGGTGGACTAGGCATGCTAGGTGGGGATCCA
ACGGTTGGTGCTACACCAGATGCCTCTCAAATGAACCAGTTTCTGCAAAA
TCCAGCCATGTCACAGATGATGCAGAGCTTACTTTCCAATCCACAATATA
TGAATCAGGTAATGCATAGATTAATATCTTTTAGGCCTTGGTTGTTATTG
ATGGTATCTTTCAATTTCAGATCATGAGTCTAAACCCACAACTCCAAAGC
TTGATGGATTCAAGTCCTCAGGTGAGGGAGATGATGCAGAATCCGGAGTT
CCTTCGTATGCTTAGCTCCCCAGAGACAATGCAGGTCTGTTCAGCCTACT
CACATTTGCCTCTACTGTGTTTATTATGCATATGGTCTCTTCACAAAAGT
TTTTTTTTTGTGGATCTTTAAGTTATTTAAAATGTGATGGAGTTTCTCCA
AGCTAATGTTTGTGGATTTGTTTTTGTCCGTAGCAAATGATGAGTCTGCA
GCAATCACTGTTATCTGGAAATAGGAGTACGACCACAGGTACTCTTGGAA
TTAAAAATATTAATCGTTGCATCCACAATTCAAAGGCCTTATCACTTAGT
GTTACTCACTTCTATGTCTGTCTTTGCATATTCTGATTATAATTTCATCT
GCAGTTAATGGATTGAGTGGTTATTAATACTCAATGGAACAGGTAATAAA
GGAGGGCTGGATTCATTGATGAGTATTTTTGGCAGTCTTGGTGCTGGCGG
CGGCTTGAGTGGTGCGAACCAGTCTAATGGTGAGATTGCAGTTTTTTCTT
TGAAATGTAATCTACACTTGAGATGGTTTTCTGTTTAAATGTGTTTTTTT
TTGTGGTTGCAGTACCTCCTGAGGAGCTATACGCCACACAATTGCAACAG
CTAGAGGAAATGGGATTCTTTGACAGAGCAGAGAACATTAGGGCGTTGCG
TGCAGCCAACGGCAACGTTAACGCTGCTGTAGAAAGACTCTTGGGGAGTA
TCGGCCAGTGA

Coding sequence (CDS) from alignment at A01_BnaDARv10:1508194..1510804+

>A01p03270.1_BnaDARv10-RA ID=A01p03270.1_BnaDARv10-RA|Name=A01p03270.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=1551bp|location=Sequence derived from alignment at A01_BnaDARv10:1508194..1510804+ (Brassica napus)
ATGGTTGGTGAAGTAGACTCGAACGAGCCACAAACCGTCGTTGACGGTGG
CCAAGGAGGAGAGGTGGTTTCTGTGAACGTCAGGTGCTCCAACGGCTCCA
AATTTAGCGTGAGAACGAGCCTTGAATCAACCGTAGAGTCTTTCAAAGCT
CTGGTAGCTCAGAACTGCGACGTCCCAGCTAACCAGCAGCGCTTGATTTA
CAAGGGACGCATCCTCATGGATGATCACACTCTCCTGAGCTATGGTTTAC
AAGCGGATCAGGCTCTTCATATGGTTCGAGGCTCTGCACCTCCTGGGAGC
CAAACTATTACTCCACCTAGTGTTACTCGAGGGGTTGGTTCTAATGATAC
TCCAAACACTGGAGGAGAATCTTTGTTTGGATTTAATCCTTTAGGTAGTG
GAAATGCTATGCCTCCTGGGCTGTTTGGAGCTGCTGGACTTCCGGATCTC
CAGCAAGCACATCAACAGCTAGCTCAGAACCCAAACATGGTTAGAGACAT
GATGAACGCACCAACCATTCAGAATATTATGAACAACCCTGAGCTAATGA
GGACTTTGATAATGAGCAACCCTCAGATGCGCGAGCTTGTGGATCGCAAC
CCTGAGCTTGGACATATACTCAACGACCCGAGCGTCCTTAGGCAGAGCTT
GGAAGCTGCGAGGAACCCTGAGCTTATGCGCGAGATGACGCGGAGTACTG
ATAGGGCGATGAGTAATATTGAAGCTACTCCTGAGGGGTTTAACATGCTT
AGGAGGATGTATGAGAATGTCCAGGAACCGTTGATGAACGCTACAACAAA
CAATGCCGGTTCTAATCTATTTGCTACTACTCTCTTGGGGAATCAGGGAG
CTGCTTCTAACAATCCCATGACGACCAATGGTGAAACAGGCACAGGCAAT
GCTGTGCCGAATACAAATCCACTTCCAAATCCTTGGGATGCTGCAGGTGG
TCAGACAACTACGGCTGGAAGGACCAATTCAGGTGGGGATACTAGAGCCC
CTGGCCTTGGTGGACTAGGCATGCTAGGTGGGGATCCAACGGTTGGTGCT
ACACCAGATGCCTCTCAAATGAACCAGTTTCTGCAAAATCCAGCCATGTC
ACAGATGATGCAGAGCTTACTTTCCAATCCACAATATATGAATCAGATCA
TGAGTCTAAACCCACAACTCCAAAGCTTGATGGATTCAAGTCCTCAGGTG
AGGGAGATGATGCAGAATCCGGAGTTCCTTCGTATGCTTAGCTCCCCAGA
GACAATGCAGCAAATGATGAGTCTGCAGCAATCACTGTTATCTGGAAATA
GGAGTACGACCACAGGTAATAAAGGAGGGCTGGATTCATTGATGAGTATT
TTTGGCAGTCTTGGTGCTGGCGGCGGCTTGAGTGGTGCGAACCAGTCTAA
TGTACCTCCTGAGGAGCTATACGCCACACAATTGCAACAGCTAGAGGAAA
TGGGATTCTTTGACAGAGCAGAGAACATTAGGGCGTTGCGTGCAGCCAAC
GGCAACGTTAACGCTGCTGTAGAAAGACTCTTGGGGAGTATCGGCCAGTG
A