BraAnng004740.3.5C.1 (mRNA) Brassica rapa chifu

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	BraAnng004740.3.5C.1
Unique Name	BraAnng004740.3.5C.1
Type	mRNA
Organism	Brassica rapa chifu (field mustard)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold0963	contig	Scaffold0963:2041..7238 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Brassica rapa chifu OGS3.5	2021-11-28

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
BraAnng004740.3.5C	BraAnng004740.3.5C	Brassica rapa chifu	gene	Scaffold0963 2041..7238 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BraAnng004740.3.5C.1.utr5p1	BraAnng004740.3.5C.1.utr5p1	Brassica rapa chifu	five_prime_UTR	Scaffold0963 2041..2147 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BraAnng004740.3.5C.1.exon1	BraAnng004740.3.5C.1.exon1	Brassica rapa chifu	exon	Scaffold0963 2041..7238 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
cds.BraAnng004740.3.5C.1	cds.BraAnng004740.3.5C.1	Brassica rapa chifu	CDS	Scaffold0963 2148..6923 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BraAnng004740.3.5C.1.utr3p1	BraAnng004740.3.5C.1.utr3p1	Brassica rapa chifu	three_prime_UTR	Scaffold0963 6924..7238 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
BraAnng004740.3.5C.1	BraAnng004740.3.5C.1-P1	Brassica rapa chifu	polypeptide	Scaffold0963 2148..6923 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold0963:2041..7238+
coding sequence from alignment at Scaffold0963:2041..7238+

spliced messenger RNA

>BraAnng004740.3.5C.1 ID=BraAnng004740.3.5C.1|Name=BraAnng004740.3.5C.1|organism=Brassica rapa chifu|type=mRNA|length=5198bp|location=Sequence derived from alignment at Scaffold0963:2041..7238+ (Brassica rapa chifu)|Notes=Excludes all bases but those of type(s): exon.  
AAAGGAAAACTCACATTCATTGCATATATTAGTTAATATCCTTAGTCTTC
TTCTACAGATTCTTTGCAAGTCACCCTTTTCTTTCTCTCTTGTCGCAGGA
CAAAACCATGGGAGACCTAAATGGTGCACCAACACAAGCCGAGATCAATG
CTCAGCTGATGGCTAACCATGCTGAACTCCAAGCCGCCCTGGCTACTGTG
ACTGAGCAGCTGGCTCATATAGCAGGAAGGGATCGAGCTAATGCACCACG
GCCAAGGAGGAGAAACCAACCCGTTCCAGAGGAACAACAGTCCCAATCCA
GTGAGGACAACTCGGACACTGACCGTACCGAACCGGAAGAGCCGCGGCGC
GAACGGGCCGGACGTGGAAACCGACGGGAGTATCGGGTCCAAGGCGATGG
GAGCCCGGTCCGAAGGAGATTCCGAGACGATGAAGTAGCTTGGCAAGGAG
GCAAGGATCTCAAACTTACTCCTCCAACCTTTGCTGGAAAGGTTGACCCG
GACGCCTACATTGAATGGGAGAGGCGCATGGAGTACATCTTTGAGTACTA
CCGCTATACCGAGGCCAAGAAGATCGCCTTAGCCGCAGCCCAACTGACGG
ACAATGCTCTAACCTGGTGGGACAGGGAAGTAGCCGAGGTCGGCAGAGTC
TATAGGATTGAGACTTGGGATGAGATGCGAGCTAAGCTCCGTGCAAGGTA
TATTCCCTCATACTATCAGCGGGACTTACTAAAACGTTTTCGCAAGTTGT
CTCAGGGTACTAGGTCCGTAGAGGAGTACTTTGAGGAGTTTGAGGCTCTC
AAGAACAAGCTCAGGACGCGCGAGACCGAAGAGGTTATGATGGCTCAGTT
CTTGGAAGGCCTTCAAGACCGCATCGCTCGCAAGGTGGAGAGGCAAACCT
ACGTCAACTTCAATGATCTCCTCCACTATGCCATCCAGGCCGAGCAGCAC
ATTAAACGGAAGAACGCCTCTAGTGCCAGGAACAAGACGCCATGGGCTTC
AACCGGATCCAAGGGGTCTGAGAAGAACAAATCCATTGAAGTGGAAAACC
GGTTCAAGAAGAGCCAAACCGACCAGTCCAAACCAGGTTCATCCGAACCA
GGTAAGGGACAAACACAAGCTCAAAGAACTCGTGATATTACTTGTTTCAA
ATGTCAGGGGAAGGGGCACTACGCCAGGGACTGTCCGAACAAGCGTGTCA
TGATCCTTAAGGCAGACGGCGAGTATGAGTCCCAAGACGAGGCCGATGTA
GAGATGGCCGACTCAGGAGACGAGATAGTGGACTATGCTGAAACTGGTGA
GCTACTGGTGGTCAGACGAGCTCTCAGTGCTCTCTTTGATCCAGAAACCG
TCCAACGAGAGAACATCTTCCATACTAGATGTAGCGTGGAAGGCAAGGTA
TGTAGTCTAATTATTGATGGTGGCTCTTGCACTAACGTGGCCAGCAGGTA
CCTTGTTGAGAAGTTAGGGCTAGCAAAGTTGCCACACCCCAGGCCGTACA
AGCTCAAGTGGCTCAATGATGAGACGGAGCTTAAAATCTCGGAGCAAGTT
GTTGTTTCCTTTTGTATTGGTAAGTACCAGGACCAGGTGAAGTGTGATGT
GGTTCCTATGCAAGCCGGTCATCTACTGTTAGGGAGGCCTTGGCAGTTTG
ACAAGGAGACTATTCACCATGGGAGGACTAACATCTACAGCTTTACCCAC
AACAACAAGAAGCACAGCCTGGCTCCTCTCAGTCCACAAGAGGTGTACGA
GATGCAGAGGGCCATGGATCAGTCTGGATTGTTTAGTAAAACTAACCTTT
ACATCTCTTCTAGTAAATTGATTAAATCATTGCATCAAGACACACAGGTG
CTACTAATGGTTTTCAAGGAAGGTTGTTTTGCAGGTTTTGAGGCACCAGA
TTGTCCAGCTGAGATGCAAGGACTAATGGACCAGTACAAGGACGTGTTCC
CTGAAGAGATACCAGCCGGCTTACCACCCCTCCGAGGCATCGAACATCAG
ATAGACTTTGTGCCAGGCGCCCCACTTCCAAACCGAGCCGCATACCGAGT
CAATCCGGAGGAGGCTAAGGAGCTGGAGAGACAGGTCCAAGACCTCATGG
ACAAGGGATACATTCGAGAGAGTCTCAGCCCATGTGCAGTACCCGTCCTA
TTGGTGCCTAAGAAGGATGGAACGTGGCGTATGTGTGTTGATTGCCGAGC
CATCAACAACATCACCATAAAATATCGGTACCCCATTCCTAGACTTGATG
ATATGTTAGATGAACTGAGTGGTTCCACCGTGTTTTCCAAGATTGATCTT
AGGAGTGGCTATCACCAAGTTCGGATGAAGGAGGGAGACGAGTGGAAGAC
TGCTTTCAAGACCAAGCAAGGCTTGTATGAGTGGCTGGTGATGCCATTTG
GTCTTACCAACGCCCCTAGTACCTTCATGAGGCTTATGAACGAGGTTCTA
AGGCCTTACATTGGTAAATTTGTGGTTGTCTATTTTGATGACATATTGAT
CTATAGTCAGTGCTTATCCGATCACATTAGTCATGTAGAACAGGTTTTGA
AGGCTCTCAGGCAGGAAGGACTCTTTGCCAATCTCAAGAAGTGTGTATTT
TGCACTGACCAGTTAATATTTTTAGGCTTTGTTGTGAGTTCACAGGGTTT
GAAGGTCGATGAGGAGAAGATCAAGGCCATCCAAGACTGGCCCACACCGA
CCACTATTGGGCAAGTCCGAAGTTTCCATGGCCTAGCCAGCTTCTATAGG
CGGTTTGTCAAGGACTTCAGCACCATTGCCGCACCCATGACCTCAGTGAT
CAAGAAGAATGTATCCTTTGTTTGGGGCCCTGCCCAAGAGGAGTCTTTCA
ACAAGCTTAAATATAGTTTAACTCATGCACCCGTTCTTACACTCCCTGAT
TTTAATAAAACTTTTGAGATTGAGTGTGATGCATCAGGTACAGGCATTGG
AGCTGTCCTCACTCAAGGGGGCCGACCAGTGGCATTCTTTAGTGAGAAAC
TGAGTGGAGCTGCCCTCAACTACCCAACCTATGACAAAGAGCTATACGCT
CTAGTAAGGTCCCTTGAAACTTGGCAGCATTACCTATTGTCTAAGGAATT
TGTTATTCATACAGATCATGAGACACTTAAGCACTTGAGGGGACAGACCA
CACTCAAGAAGAGGCACGCCAGATGGCTCGAGTTCGTGGAGACCTTTCCC
TATGTGATCAAGTACAAGAAGGGCAAGGACAATGTGGTGGCCGATGCACT
GTCCCGGAGACACACTCTCATTGTGACCATGGAGGCCAAGATCATGGGTT
TCGAACATATTAAAGAATCTTATGCCACTGATCTTGATTTTAATGAAGTT
TTCAGGAACACTGAGAAGGGGGCTTTTGGGGCATACTACCAGCACGAGGG
GTTCCTGTTCAAGGGAAAGAGGCTGTGCATTCCCAAAGGAGCCATGAGGG
AACTGCTGGTTCGGGAGGCCCATGGTGGCGGCCTCATGGGACACTTTGGT
CGGGACAAGACCTTGAGTGTCCTAACTGAACATTTCTTTTGGCCAAACAT
GAAGAGGGATGTGGAGAGCATATGCGCCAAGTGCACTACTTGCCTCAAAA
CCAAGTCCAGGTCACATCCTTACGGTTTACAAATGCCATTACCGATTCCT
AACCACCCTTGGGTAGACATTTCTATGGACTTTGTGCTGGGTTTACCCAA
GATAAACCACAAGGATTCCATTTTTGTAGTGGTAGACAGGTTCTCCAAGA
TGGCCCATTTCATAGCCTGTAACACCACTAATGATGCCACTCAGACCGCC
GACCTATTCTTCAAAGAAGTGGTTCGACTACATGGTGTTCCTCGAACCAT
TGTCTCTGACCGTGATACCAAGTTCCTCAGCCATTTCTGGAGGACACTAT
GGGGCAAGTTCGGAACCAAGCTACTATTCTCGACCACTTGCCATCCCCAG
ACCGACGGCCAGACTGAGGTAGTAAACCGTACGCTTTCTCAACTGTTGAG
AGCTACGGTCGGTAAGAATTTAAGAAATTGGTTGTCTTGTTTGCCTTTTG
TTGAGTTTGCTTATAACCATGCTAGGCACTCTACTACTAACCTGTCACCT
TTTGAGATTGTTTATGGGTTTCAGCCAGAGACTCCTTTGGACTTCACCGA
ACTGCCCAGCTCTATGTACCGCAGTCGTGATGGAGCCGCCAAGGCCGAGT
TTGTTAAGAATATGCACCTAAAGGTCAAGGAGAGGATAGAAGCCAAGGCG
GCTAAGGTCAAGGCCAAGTATGACCAGAAGAGGAAGGAGGTACTGTTCGA
ACCCGGGGACTTGGTGTGGTTACACATGCGGCCCGAGAGGTTTCCAGAAG
CCCGGAAGTCCAAGCTCTCTCCTCGTGGGACAGGACCATTCCGCATCCTA
AAGAAGATCAACGACAACGCCTATATCCTTGACCTCCCTGCTGAATTTAA
AATTTCACATACTTTCAATGTCTCGGATTTGTCTCCTTTCCATGCAGATA
GTGATGACTTTGCAGATGATGGTGTTCTGAGGCCAGAACCTCTTCAAGAG
GGAGGGAATGATGAGGCCATCCAAGTAGAGGTTCCCATAGTTAGGCGCGG
TCCGACTACCCGGAGTGGAACCAGGGCCTTGCGAGAAGGTTTCACCAAAG
CTGTCCAGCATATCCTTGATCAAGATGGACAGACTGACCAGGACCAGCTG
CTGATTGAGAAGATGGTCCAGTTGAAGATTCAAGATCAAGCCGGCCCAAA
GGAGGTTCAGGACGCGGCCGACCCGATCCAGTTCAGACTCAACCAAGCCG
GACTTCTCATCTCCACATCCGAGCTTGGTCCAGACTCAGTTTCTATTTCA
TCCACTCCAACTCTTTCCGGTTCTGAGATCTAGCCGACCACCAAGGGGAG
TAGCATGTGTTGTACTCTTTTTCCTCACCAGGTTTTGTCCCATTGGGTTT
TCTTGGTAAGGTTTTAATGAGGCAACATGCAAGCATGCTATTAGCCTTGG
TCTAAGCCTTCTCAAACCGACCACCAGATGTCTGGTTTATTTTAATTTAT
TTGGTTAAGACTTTGGGCTAATGTTTCAGCCTCATTTTCGGCCAGCTTGT
TTAAGGCCTTTTATCTTTGAGTCTCTTAAGGGGTAAACCCTATATAACTC
CTTGAAGTTGGCGATTTTTGCCTAAGTCTTTTATGAAATAATTTTGCC

protein sequence of BraAnng004740.3.5C.1

>BraAnng004740.3.5C.1-P1 ID=BraAnng004740.3.5C.1-P1|Name=BraAnng004740.3.5C.1|organism=Brassica rapa chifu|type=polypeptide|length=1592bp
MGDLNGAPTQAEINAQLMANHAELQAALATVTEQLAHIAGRDRANAPRPR
RRNQPVPEEQQSQSSEDNSDTDRTEPEEPRRERAGRGNRREYRVQGDGSP
VRRRFRDDEVAWQGGKDLKLTPPTFAGKVDPDAYIEWERRMEYIFEYYRY
TEAKKIALAAAQLTDNALTWWDREVAEVGRVYRIETWDEMRAKLRARYIP
SYYQRDLLKRFRKLSQGTRSVEEYFEEFEALKNKLRTRETEEVMMAQFLE
GLQDRIARKVERQTYVNFNDLLHYAIQAEQHIKRKNASSARNKTPWASTG
SKGSEKNKSIEVENRFKKSQTDQSKPGSSEPGKGQTQAQRTRDITCFKCQ
GKGHYARDCPNKRVMILKADGEYESQDEADVEMADSGDEIVDYAETGELL
VVRRALSALFDPETVQRENIFHTRCSVEGKVCSLIIDGGSCTNVASRYLV
EKLGLAKLPHPRPYKLKWLNDETELKISEQVVVSFCIGKYQDQVKCDVVP
MQAGHLLLGRPWQFDKETIHHGRTNIYSFTHNNKKHSLAPLSPQEVYEMQ
RAMDQSGLFSKTNLYISSSKLIKSLHQDTQVLLMVFKEGCFAGFEAPDCP
AEMQGLMDQYKDVFPEEIPAGLPPLRGIEHQIDFVPGAPLPNRAAYRVNP
EEAKELERQVQDLMDKGYIRESLSPCAVPVLLVPKKDGTWRMCVDCRAIN
NITIKYRYPIPRLDDMLDELSGSTVFSKIDLRSGYHQVRMKEGDEWKTAF
KTKQGLYEWLVMPFGLTNAPSTFMRLMNEVLRPYIGKFVVVYFDDILIYS
QCLSDHISHVEQVLKALRQEGLFANLKKCVFCTDQLIFLGFVVSSQGLKV
DEEKIKAIQDWPTPTTIGQVRSFHGLASFYRRFVKDFSTIAAPMTSVIKK
NVSFVWGPAQEESFNKLKYSLTHAPVLTLPDFNKTFEIECDASGTGIGAV
LTQGGRPVAFFSEKLSGAALNYPTYDKELYALVRSLETWQHYLLSKEFVI
HTDHETLKHLRGQTTLKKRHARWLEFVETFPYVIKYKKGKDNVVADALSR
RHTLIVTMEAKIMGFEHIKESYATDLDFNEVFRNTEKGAFGAYYQHEGFL
FKGKRLCIPKGAMRELLVREAHGGGLMGHFGRDKTLSVLTEHFFWPNMKR
DVESICAKCTTCLKTKSRSHPYGLQMPLPIPNHPWVDISMDFVLGLPKIN
HKDSIFVVVDRFSKMAHFIACNTTNDATQTADLFFKEVVRLHGVPRTIVS
DRDTKFLSHFWRTLWGKFGTKLLFSTTCHPQTDGQTEVVNRTLSQLLRAT
VGKNLRNWLSCLPFVEFAYNHARHSTTNLSPFEIVYGFQPETPLDFTELP
SSMYRSRDGAAKAEFVKNMHLKVKERIEAKAAKVKAKYDQKRKEVLFEPG
DLVWLHMRPERFPEARKSKLSPRGTGPFRILKKINDNAYILDLPAEFKIS
HTFNVSDLSPFHADSDDFADDGVLRPEPLQEGGNDEAIQVEVPIVRRGPT
TRSGTRALREGFTKAVQHILDQDGQTDQDQLLIEKMVQLKIQDQAGPKEV
QDAADPIQFRLNQAGLLISTSELGPDSVSISSTPTLSGSEI.

mRNA from alignment at Scaffold0963:2041..7238+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>BraAnng004740.3.5C.1 ID=BraAnng004740.3.5C.1|Name=BraAnng004740.3.5C.1|organism=Brassica rapa chifu|type=mRNA|length=5198bp|location=Sequence derived from alignment at Scaffold0963:2041..7238+ (Brassica rapa chifu)
AAAGGAAAACTCACATTCATTGCATATATTAGTTAATATCCTTAGTCTTC
TTCTACAGATTCTTTGCAAGTCACCCTTTTCTTTCTCTCTTGTCGCAGGA
CAAAACCATGGGAGACCTAAATGGTGCACCAACACAAGCCGAGATCAATG
CTCAGCTGATGGCTAACCATGCTGAACTCCAAGCCGCCCTGGCTACTGTG
ACTGAGCAGCTGGCTCATATAGCAGGAAGGGATCGAGCTAATGCACCACG
GCCAAGGAGGAGAAACCAACCCGTTCCAGAGGAACAACAGTCCCAATCCA
GTGAGGACAACTCGGACACTGACCGTACCGAACCGGAAGAGCCGCGGCGC
GAACGGGCCGGACGTGGAAACCGACGGGAGTATCGGGTCCAAGGCGATGG
GAGCCCGGTCCGAAGGAGATTCCGAGACGATGAAGTAGCTTGGCAAGGAG
GCAAGGATCTCAAACTTACTCCTCCAACCTTTGCTGGAAAGGTTGACCCG
GACGCCTACATTGAATGGGAGAGGCGCATGGAGTACATCTTTGAGTACTA
CCGCTATACCGAGGCCAAGAAGATCGCCTTAGCCGCAGCCCAACTGACGG
ACAATGCTCTAACCTGGTGGGACAGGGAAGTAGCCGAGGTCGGCAGAGTC
TATAGGATTGAGACTTGGGATGAGATGCGAGCTAAGCTCCGTGCAAGGTA
TATTCCCTCATACTATCAGCGGGACTTACTAAAACGTTTTCGCAAGTTGT
CTCAGGGTACTAGGTCCGTAGAGGAGTACTTTGAGGAGTTTGAGGCTCTC
AAGAACAAGCTCAGGACGCGCGAGACCGAAGAGGTTATGATGGCTCAGTT
CTTGGAAGGCCTTCAAGACCGCATCGCTCGCAAGGTGGAGAGGCAAACCT
ACGTCAACTTCAATGATCTCCTCCACTATGCCATCCAGGCCGAGCAGCAC
ATTAAACGGAAGAACGCCTCTAGTGCCAGGAACAAGACGCCATGGGCTTC
AACCGGATCCAAGGGGTCTGAGAAGAACAAATCCATTGAAGTGGAAAACC
GGTTCAAGAAGAGCCAAACCGACCAGTCCAAACCAGGTTCATCCGAACCA
GGTAAGGGACAAACACAAGCTCAAAGAACTCGTGATATTACTTGTTTCAA
ATGTCAGGGGAAGGGGCACTACGCCAGGGACTGTCCGAACAAGCGTGTCA
TGATCCTTAAGGCAGACGGCGAGTATGAGTCCCAAGACGAGGCCGATGTA
GAGATGGCCGACTCAGGAGACGAGATAGTGGACTATGCTGAAACTGGTGA
GCTACTGGTGGTCAGACGAGCTCTCAGTGCTCTCTTTGATCCAGAAACCG
TCCAACGAGAGAACATCTTCCATACTAGATGTAGCGTGGAAGGCAAGGTA
TGTAGTCTAATTATTGATGGTGGCTCTTGCACTAACGTGGCCAGCAGGTA
CCTTGTTGAGAAGTTAGGGCTAGCAAAGTTGCCACACCCCAGGCCGTACA
AGCTCAAGTGGCTCAATGATGAGACGGAGCTTAAAATCTCGGAGCAAGTT
GTTGTTTCCTTTTGTATTGGTAAGTACCAGGACCAGGTGAAGTGTGATGT
GGTTCCTATGCAAGCCGGTCATCTACTGTTAGGGAGGCCTTGGCAGTTTG
ACAAGGAGACTATTCACCATGGGAGGACTAACATCTACAGCTTTACCCAC
AACAACAAGAAGCACAGCCTGGCTCCTCTCAGTCCACAAGAGGTGTACGA
GATGCAGAGGGCCATGGATCAGTCTGGATTGTTTAGTAAAACTAACCTTT
ACATCTCTTCTAGTAAATTGATTAAATCATTGCATCAAGACACACAGGTG
CTACTAATGGTTTTCAAGGAAGGTTGTTTTGCAGGTTTTGAGGCACCAGA
TTGTCCAGCTGAGATGCAAGGACTAATGGACCAGTACAAGGACGTGTTCC
CTGAAGAGATACCAGCCGGCTTACCACCCCTCCGAGGCATCGAACATCAG
ATAGACTTTGTGCCAGGCGCCCCACTTCCAAACCGAGCCGCATACCGAGT
CAATCCGGAGGAGGCTAAGGAGCTGGAGAGACAGGTCCAAGACCTCATGG
ACAAGGGATACATTCGAGAGAGTCTCAGCCCATGTGCAGTACCCGTCCTA
TTGGTGCCTAAGAAGGATGGAACGTGGCGTATGTGTGTTGATTGCCGAGC
CATCAACAACATCACCATAAAATATCGGTACCCCATTCCTAGACTTGATG
ATATGTTAGATGAACTGAGTGGTTCCACCGTGTTTTCCAAGATTGATCTT
AGGAGTGGCTATCACCAAGTTCGGATGAAGGAGGGAGACGAGTGGAAGAC
TGCTTTCAAGACCAAGCAAGGCTTGTATGAGTGGCTGGTGATGCCATTTG
GTCTTACCAACGCCCCTAGTACCTTCATGAGGCTTATGAACGAGGTTCTA
AGGCCTTACATTGGTAAATTTGTGGTTGTCTATTTTGATGACATATTGAT
CTATAGTCAGTGCTTATCCGATCACATTAGTCATGTAGAACAGGTTTTGA
AGGCTCTCAGGCAGGAAGGACTCTTTGCCAATCTCAAGAAGTGTGTATTT
TGCACTGACCAGTTAATATTTTTAGGCTTTGTTGTGAGTTCACAGGGTTT
GAAGGTCGATGAGGAGAAGATCAAGGCCATCCAAGACTGGCCCACACCGA
CCACTATTGGGCAAGTCCGAAGTTTCCATGGCCTAGCCAGCTTCTATAGG
CGGTTTGTCAAGGACTTCAGCACCATTGCCGCACCCATGACCTCAGTGAT
CAAGAAGAATGTATCCTTTGTTTGGGGCCCTGCCCAAGAGGAGTCTTTCA
ACAAGCTTAAATATAGTTTAACTCATGCACCCGTTCTTACACTCCCTGAT
TTTAATAAAACTTTTGAGATTGAGTGTGATGCATCAGGTACAGGCATTGG
AGCTGTCCTCACTCAAGGGGGCCGACCAGTGGCATTCTTTAGTGAGAAAC
TGAGTGGAGCTGCCCTCAACTACCCAACCTATGACAAAGAGCTATACGCT
CTAGTAAGGTCCCTTGAAACTTGGCAGCATTACCTATTGTCTAAGGAATT
TGTTATTCATACAGATCATGAGACACTTAAGCACTTGAGGGGACAGACCA
CACTCAAGAAGAGGCACGCCAGATGGCTCGAGTTCGTGGAGACCTTTCCC
TATGTGATCAAGTACAAGAAGGGCAAGGACAATGTGGTGGCCGATGCACT
GTCCCGGAGACACACTCTCATTGTGACCATGGAGGCCAAGATCATGGGTT
TCGAACATATTAAAGAATCTTATGCCACTGATCTTGATTTTAATGAAGTT
TTCAGGAACACTGAGAAGGGGGCTTTTGGGGCATACTACCAGCACGAGGG
GTTCCTGTTCAAGGGAAAGAGGCTGTGCATTCCCAAAGGAGCCATGAGGG
AACTGCTGGTTCGGGAGGCCCATGGTGGCGGCCTCATGGGACACTTTGGT
CGGGACAAGACCTTGAGTGTCCTAACTGAACATTTCTTTTGGCCAAACAT
GAAGAGGGATGTGGAGAGCATATGCGCCAAGTGCACTACTTGCCTCAAAA
CCAAGTCCAGGTCACATCCTTACGGTTTACAAATGCCATTACCGATTCCT
AACCACCCTTGGGTAGACATTTCTATGGACTTTGTGCTGGGTTTACCCAA
GATAAACCACAAGGATTCCATTTTTGTAGTGGTAGACAGGTTCTCCAAGA
TGGCCCATTTCATAGCCTGTAACACCACTAATGATGCCACTCAGACCGCC
GACCTATTCTTCAAAGAAGTGGTTCGACTACATGGTGTTCCTCGAACCAT
TGTCTCTGACCGTGATACCAAGTTCCTCAGCCATTTCTGGAGGACACTAT
GGGGCAAGTTCGGAACCAAGCTACTATTCTCGACCACTTGCCATCCCCAG
ACCGACGGCCAGACTGAGGTAGTAAACCGTACGCTTTCTCAACTGTTGAG
AGCTACGGTCGGTAAGAATTTAAGAAATTGGTTGTCTTGTTTGCCTTTTG
TTGAGTTTGCTTATAACCATGCTAGGCACTCTACTACTAACCTGTCACCT
TTTGAGATTGTTTATGGGTTTCAGCCAGAGACTCCTTTGGACTTCACCGA
ACTGCCCAGCTCTATGTACCGCAGTCGTGATGGAGCCGCCAAGGCCGAGT
TTGTTAAGAATATGCACCTAAAGGTCAAGGAGAGGATAGAAGCCAAGGCG
GCTAAGGTCAAGGCCAAGTATGACCAGAAGAGGAAGGAGGTACTGTTCGA
ACCCGGGGACTTGGTGTGGTTACACATGCGGCCCGAGAGGTTTCCAGAAG
CCCGGAAGTCCAAGCTCTCTCCTCGTGGGACAGGACCATTCCGCATCCTA
AAGAAGATCAACGACAACGCCTATATCCTTGACCTCCCTGCTGAATTTAA
AATTTCACATACTTTCAATGTCTCGGATTTGTCTCCTTTCCATGCAGATA
GTGATGACTTTGCAGATGATGGTGTTCTGAGGCCAGAACCTCTTCAAGAG
GGAGGGAATGATGAGGCCATCCAAGTAGAGGTTCCCATAGTTAGGCGCGG
TCCGACTACCCGGAGTGGAACCAGGGCCTTGCGAGAAGGTTTCACCAAAG
CTGTCCAGCATATCCTTGATCAAGATGGACAGACTGACCAGGACCAGCTG
CTGATTGAGAAGATGGTCCAGTTGAAGATTCAAGATCAAGCCGGCCCAAA
GGAGGTTCAGGACGCGGCCGACCCGATCCAGTTCAGACTCAACCAAGCCG
GACTTCTCATCTCCACATCCGAGCTTGGTCCAGACTCAGTTTCTATTTCA
TCCACTCCAACTCTTTCCGGTTCTGAGATCTAGCCGACCACCAAGGGGAG
TAGCATGTGTTGTACTCTTTTTCCTCACCAGGTTTTGTCCCATTGGGTTT
TCTTGGTAAGGTTTTAATGAGGCAACATGCAAGCATGCTATTAGCCTTGG
TCTAAGCCTTCTCAAACCGACCACCAGATGTCTGGTTTATTTTAATTTAT
TTGGTTAAGACTTTGGGCTAATGTTTCAGCCTCATTTTCGGCCAGCTTGT
TTAAGGCCTTTTATCTTTGAGTCTCTTAAGGGGTAAACCCTATATAACTC
CTTGAAGTTGGCGATTTTTGCCTAAGTCTTTTATGAAATAATTTTGCC

Coding sequence (CDS) from alignment at Scaffold0963:2041..7238+

>BraAnng004740.3.5C.1 ID=BraAnng004740.3.5C.1|Name=BraAnng004740.3.5C.1|organism=Brassica rapa chifu|type=CDS|length=4776bp|location=Sequence derived from alignment at Scaffold0963:2041..7238+ (Brassica rapa chifu)
ATGGGAGACCTAAATGGTGCACCAACACAAGCCGAGATCAATGCTCAGCT
GATGGCTAACCATGCTGAACTCCAAGCCGCCCTGGCTACTGTGACTGAGC
AGCTGGCTCATATAGCAGGAAGGGATCGAGCTAATGCACCACGGCCAAGG
AGGAGAAACCAACCCGTTCCAGAGGAACAACAGTCCCAATCCAGTGAGGA
CAACTCGGACACTGACCGTACCGAACCGGAAGAGCCGCGGCGCGAACGGG
CCGGACGTGGAAACCGACGGGAGTATCGGGTCCAAGGCGATGGGAGCCCG
GTCCGAAGGAGATTCCGAGACGATGAAGTAGCTTGGCAAGGAGGCAAGGA
TCTCAAACTTACTCCTCCAACCTTTGCTGGAAAGGTTGACCCGGACGCCT
ACATTGAATGGGAGAGGCGCATGGAGTACATCTTTGAGTACTACCGCTAT
ACCGAGGCCAAGAAGATCGCCTTAGCCGCAGCCCAACTGACGGACAATGC
TCTAACCTGGTGGGACAGGGAAGTAGCCGAGGTCGGCAGAGTCTATAGGA
TTGAGACTTGGGATGAGATGCGAGCTAAGCTCCGTGCAAGGTATATTCCC
TCATACTATCAGCGGGACTTACTAAAACGTTTTCGCAAGTTGTCTCAGGG
TACTAGGTCCGTAGAGGAGTACTTTGAGGAGTTTGAGGCTCTCAAGAACA
AGCTCAGGACGCGCGAGACCGAAGAGGTTATGATGGCTCAGTTCTTGGAA
GGCCTTCAAGACCGCATCGCTCGCAAGGTGGAGAGGCAAACCTACGTCAA
CTTCAATGATCTCCTCCACTATGCCATCCAGGCCGAGCAGCACATTAAAC
GGAAGAACGCCTCTAGTGCCAGGAACAAGACGCCATGGGCTTCAACCGGA
TCCAAGGGGTCTGAGAAGAACAAATCCATTGAAGTGGAAAACCGGTTCAA
GAAGAGCCAAACCGACCAGTCCAAACCAGGTTCATCCGAACCAGGTAAGG
GACAAACACAAGCTCAAAGAACTCGTGATATTACTTGTTTCAAATGTCAG
GGGAAGGGGCACTACGCCAGGGACTGTCCGAACAAGCGTGTCATGATCCT
TAAGGCAGACGGCGAGTATGAGTCCCAAGACGAGGCCGATGTAGAGATGG
CCGACTCAGGAGACGAGATAGTGGACTATGCTGAAACTGGTGAGCTACTG
GTGGTCAGACGAGCTCTCAGTGCTCTCTTTGATCCAGAAACCGTCCAACG
AGAGAACATCTTCCATACTAGATGTAGCGTGGAAGGCAAGGTATGTAGTC
TAATTATTGATGGTGGCTCTTGCACTAACGTGGCCAGCAGGTACCTTGTT
GAGAAGTTAGGGCTAGCAAAGTTGCCACACCCCAGGCCGTACAAGCTCAA
GTGGCTCAATGATGAGACGGAGCTTAAAATCTCGGAGCAAGTTGTTGTTT
CCTTTTGTATTGGTAAGTACCAGGACCAGGTGAAGTGTGATGTGGTTCCT
ATGCAAGCCGGTCATCTACTGTTAGGGAGGCCTTGGCAGTTTGACAAGGA
GACTATTCACCATGGGAGGACTAACATCTACAGCTTTACCCACAACAACA
AGAAGCACAGCCTGGCTCCTCTCAGTCCACAAGAGGTGTACGAGATGCAG
AGGGCCATGGATCAGTCTGGATTGTTTAGTAAAACTAACCTTTACATCTC
TTCTAGTAAATTGATTAAATCATTGCATCAAGACACACAGGTGCTACTAA
TGGTTTTCAAGGAAGGTTGTTTTGCAGGTTTTGAGGCACCAGATTGTCCA
GCTGAGATGCAAGGACTAATGGACCAGTACAAGGACGTGTTCCCTGAAGA
GATACCAGCCGGCTTACCACCCCTCCGAGGCATCGAACATCAGATAGACT
TTGTGCCAGGCGCCCCACTTCCAAACCGAGCCGCATACCGAGTCAATCCG
GAGGAGGCTAAGGAGCTGGAGAGACAGGTCCAAGACCTCATGGACAAGGG
ATACATTCGAGAGAGTCTCAGCCCATGTGCAGTACCCGTCCTATTGGTGC
CTAAGAAGGATGGAACGTGGCGTATGTGTGTTGATTGCCGAGCCATCAAC
AACATCACCATAAAATATCGGTACCCCATTCCTAGACTTGATGATATGTT
AGATGAACTGAGTGGTTCCACCGTGTTTTCCAAGATTGATCTTAGGAGTG
GCTATCACCAAGTTCGGATGAAGGAGGGAGACGAGTGGAAGACTGCTTTC
AAGACCAAGCAAGGCTTGTATGAGTGGCTGGTGATGCCATTTGGTCTTAC
CAACGCCCCTAGTACCTTCATGAGGCTTATGAACGAGGTTCTAAGGCCTT
ACATTGGTAAATTTGTGGTTGTCTATTTTGATGACATATTGATCTATAGT
CAGTGCTTATCCGATCACATTAGTCATGTAGAACAGGTTTTGAAGGCTCT
CAGGCAGGAAGGACTCTTTGCCAATCTCAAGAAGTGTGTATTTTGCACTG
ACCAGTTAATATTTTTAGGCTTTGTTGTGAGTTCACAGGGTTTGAAGGTC
GATGAGGAGAAGATCAAGGCCATCCAAGACTGGCCCACACCGACCACTAT
TGGGCAAGTCCGAAGTTTCCATGGCCTAGCCAGCTTCTATAGGCGGTTTG
TCAAGGACTTCAGCACCATTGCCGCACCCATGACCTCAGTGATCAAGAAG
AATGTATCCTTTGTTTGGGGCCCTGCCCAAGAGGAGTCTTTCAACAAGCT
TAAATATAGTTTAACTCATGCACCCGTTCTTACACTCCCTGATTTTAATA
AAACTTTTGAGATTGAGTGTGATGCATCAGGTACAGGCATTGGAGCTGTC
CTCACTCAAGGGGGCCGACCAGTGGCATTCTTTAGTGAGAAACTGAGTGG
AGCTGCCCTCAACTACCCAACCTATGACAAAGAGCTATACGCTCTAGTAA
GGTCCCTTGAAACTTGGCAGCATTACCTATTGTCTAAGGAATTTGTTATT
CATACAGATCATGAGACACTTAAGCACTTGAGGGGACAGACCACACTCAA
GAAGAGGCACGCCAGATGGCTCGAGTTCGTGGAGACCTTTCCCTATGTGA
TCAAGTACAAGAAGGGCAAGGACAATGTGGTGGCCGATGCACTGTCCCGG
AGACACACTCTCATTGTGACCATGGAGGCCAAGATCATGGGTTTCGAACA
TATTAAAGAATCTTATGCCACTGATCTTGATTTTAATGAAGTTTTCAGGA
ACACTGAGAAGGGGGCTTTTGGGGCATACTACCAGCACGAGGGGTTCCTG
TTCAAGGGAAAGAGGCTGTGCATTCCCAAAGGAGCCATGAGGGAACTGCT
GGTTCGGGAGGCCCATGGTGGCGGCCTCATGGGACACTTTGGTCGGGACA
AGACCTTGAGTGTCCTAACTGAACATTTCTTTTGGCCAAACATGAAGAGG
GATGTGGAGAGCATATGCGCCAAGTGCACTACTTGCCTCAAAACCAAGTC
CAGGTCACATCCTTACGGTTTACAAATGCCATTACCGATTCCTAACCACC
CTTGGGTAGACATTTCTATGGACTTTGTGCTGGGTTTACCCAAGATAAAC
CACAAGGATTCCATTTTTGTAGTGGTAGACAGGTTCTCCAAGATGGCCCA
TTTCATAGCCTGTAACACCACTAATGATGCCACTCAGACCGCCGACCTAT
TCTTCAAAGAAGTGGTTCGACTACATGGTGTTCCTCGAACCATTGTCTCT
GACCGTGATACCAAGTTCCTCAGCCATTTCTGGAGGACACTATGGGGCAA
GTTCGGAACCAAGCTACTATTCTCGACCACTTGCCATCCCCAGACCGACG
GCCAGACTGAGGTAGTAAACCGTACGCTTTCTCAACTGTTGAGAGCTACG
GTCGGTAAGAATTTAAGAAATTGGTTGTCTTGTTTGCCTTTTGTTGAGTT
TGCTTATAACCATGCTAGGCACTCTACTACTAACCTGTCACCTTTTGAGA
TTGTTTATGGGTTTCAGCCAGAGACTCCTTTGGACTTCACCGAACTGCCC
AGCTCTATGTACCGCAGTCGTGATGGAGCCGCCAAGGCCGAGTTTGTTAA
GAATATGCACCTAAAGGTCAAGGAGAGGATAGAAGCCAAGGCGGCTAAGG
TCAAGGCCAAGTATGACCAGAAGAGGAAGGAGGTACTGTTCGAACCCGGG
GACTTGGTGTGGTTACACATGCGGCCCGAGAGGTTTCCAGAAGCCCGGAA
GTCCAAGCTCTCTCCTCGTGGGACAGGACCATTCCGCATCCTAAAGAAGA
TCAACGACAACGCCTATATCCTTGACCTCCCTGCTGAATTTAAAATTTCA
CATACTTTCAATGTCTCGGATTTGTCTCCTTTCCATGCAGATAGTGATGA
CTTTGCAGATGATGGTGTTCTGAGGCCAGAACCTCTTCAAGAGGGAGGGA
ATGATGAGGCCATCCAAGTAGAGGTTCCCATAGTTAGGCGCGGTCCGACT
ACCCGGAGTGGAACCAGGGCCTTGCGAGAAGGTTTCACCAAAGCTGTCCA
GCATATCCTTGATCAAGATGGACAGACTGACCAGGACCAGCTGCTGATTG
AGAAGATGGTCCAGTTGAAGATTCAAGATCAAGCCGGCCCAAAGGAGGTT
CAGGACGCGGCCGACCCGATCCAGTTCAGACTCAACCAAGCCGGACTTCT
CATCTCCACATCCGAGCTTGGTCCAGACTCAGTTTCTATTTCATCCACTC
CAACTCTTTCCGGTTCTGAGATCTAG

Orthology

View orthology data for BraAnng004740.3.5C.1