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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Analysis Name | Date Performed |
Brassica rapa chifu OGS3.5 | 2021-11-28 |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Species | Type | Position |
BraA01g004360.3.5C | BraA01g004360.3.5C | Brassica rapa chifu | gene | A01 2076070..2076953 - |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
BraA01g004360.3.5C.1.exon4 | BraA01g004360.3.5C.1.exon4 | Brassica rapa chifu | exon | A01 2076070..2076171 - |
BraA01g004360.3.5C.1.exon3 | BraA01g004360.3.5C.1.exon3 | Brassica rapa chifu | exon | A01 2076248..2076355 - |
BraA01g004360.3.5C.1.exon2 | BraA01g004360.3.5C.1.exon2 | Brassica rapa chifu | exon | A01 2076431..2076570 - |
BraA01g004360.3.5C.1.exon1 | BraA01g004360.3.5C.1.exon1 | Brassica rapa chifu | exon | A01 2076893..2076953 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
cds.BraA01g004360.3.5C.1 | cds.BraA01g004360.3.5C.1 | Brassica rapa chifu | CDS | A01 2076893..2076953 - |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >BraA01g004360.3.5C.1 ID=BraA01g004360.3.5C.1|Name=BraA01g004360.3.5C.1|organism=Brassica rapa chifu|type=mRNA|length=411bp|location=Sequence derived from alignment at A01:2076070..2076953- (Brassica rapa chifu)|Notes=Excludes all bases but those of type(s): exon.
ATGAGCGTCACTCTTTTGGTTGCAGACACCGTCTGGTCGAACATCGAATC TACAGGCTCAGATGGAACATTAAAGTGTATTGTCTGGAAACTCAGCTTGC ATTTGTTGTTTGGTAAGAACCTTGAGAAAGCGACCAGAATAATCGACAAG AGAGGCGTCAAGAAAATCTCTGGCTTACCCAGTGGAAGATCCATCTTTCA GGTTGTTGGAGAATCTCAAAAGAGGGAAGAGTATCTCTGCTTCCCGGGAG ATTACTGTGGATGCTATTCTTTCTTCTATGATGTTGTTAGCAGAGGAGAG CAACAATGTTGTAAGCATCAATTGGCTGCGAGGCTGGCTTTTTCTTTGGG TGCATACAGCGAGATTGAGGTATCAGATGAGCATCTTGCCGTGATGCTTT CAAAGATCTGA back to topprotein sequence of BraA01g004360.3.5C.1 >BraA01g004360.3.5C.1-P1 ID=BraA01g004360.3.5C.1-P1|Name=BraA01g004360.3.5C.1|organism=Brassica rapa chifu|type=polypeptide|length=137bp
MSVTLLVADTVWSNIESTGSDGTLKCIVWKLSLHLLFGKNLEKATRIIDK RGVKKISGLPSGRSIFQVVGESQKREEYLCFPGDYCGCYSFFYDVVSRGE QQCCKHQLAARLAFSLGAYSEIEVSDEHLAVMLSKI. back to topmRNA from alignment at A01:2076070..2076953- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >BraA01g004360.3.5C.1 ID=BraA01g004360.3.5C.1|Name=BraA01g004360.3.5C.1|organism=Brassica rapa chifu|type=mRNA|length=884bp|location=Sequence derived from alignment at A01:2076070..2076953- (Brassica rapa chifu) ATGAGCGTCACTCTTTTGGTTGCAGACACCGTCTGGTCGAACATCGAATC
TACAGGCTCAGGTATTTCACCATCATGATCCGTCATTTTTTACTTCTTCT
TCTTCTCTCTTTCCTTCTCTCGTTTACGAGATCTTTTTCCTTGATTTTTT
TTTTTTTTTTTTTTGGCAGTAACTGAAGAACAGCTCTCAGTGTCAGTTCT
CCTGTTTCCAGTTCCCTCTTATTCTTGATAAATGACTTATATATTATTTA
AGTCTGGTTATTGTGTAATTTTGTATTGATTTAGCTCAGTCTTTTGTATA
GTGGATACCGGTTAGAGTTTTAGTGTAAAACATAACTCTTAAACTTATCA
AAGCCTTTAAAAAAATGTAATGGGGATTTTGAGATGGAACATTAAAGTGT
ATTGTCTGGAAACTCAGCTTGCATTTGTTGTTTGGTAAGAACCTTGAGAA
AGCGACCAGAATAATCGACAAGAGAGGCGTCAAGAAAATCTCTGGCTTAC
CCAGTGGAAGATCCATCTTTCAGGTCTTCTTCACACAATCAACATTGACT
CGATGTCTAAGAACATTGGTTTATTTGTTTGTTTGTGTTGTTTTACAGGT
TGTTGGAGAATCTCAAAAGAGGGAAGAGTATCTCTGCTTCCCGGGAGATT
ACTGTGGATGCTATTCTTTCTTCTATGATGTTGTTAGCAGAGGAGAGCAA
CAATGTGTAAGATTCTTAATCATCAGAGGTTTGAATTTTAGTACTGCTAC
TGACTTTTTTCTACTTATTGCTTTTGGCAAAGTGTAAGCATCAATTGGCT
GCGAGGCTGGCTTTTTCTTTGGGTGCATACAGCGAGATTGAGGTATCAGA
TGAGCATCTTGCCGTGATGCTTTCAAAGATCTGA back to topCoding sequence (CDS) from alignment at A01:2076070..2076953- >BraA01g004360.3.5C.1 ID=BraA01g004360.3.5C.1|Name=BraA01g004360.3.5C.1|organism=Brassica rapa chifu|type=CDS|length=411bp|location=Sequence derived from alignment at A01:2076070..2076953- (Brassica rapa chifu) ATGAGCGTCACTCTTTTGGTTGCAGACACCGTCTGGTCGAACATCGAATC TACAGGCTCAGATGGAACATTAAAGTGTATTGTCTGGAAACTCAGCTTGC ATTTGTTGTTTGGTAAGAACCTTGAGAAAGCGACCAGAATAATCGACAAG AGAGGCGTCAAGAAAATCTCTGGCTTACCCAGTGGAAGATCCATCTTTCA GGTTGTTGGAGAATCTCAAAAGAGGGAAGAGTATCTCTGCTTCCCGGGAG ATTACTGTGGATGCTATTCTTTCTTCTATGATGTTGTTAGCAGAGGAGAG CAACAATGTTGTAAGCATCAATTGGCTGCGAGGCTGGCTTTTTCTTTGGG TGCATACAGCGAGATTGAGGTATCAGATGAGCATCTTGCCGTGATGCTTT CAAAGATCTGA back to top
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