BraA01g004360.3.5C.1 (mRNA) Brassica rapa chifu

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBraA01g004360.3.5C.1
Unique NameBraA01g004360.3.5C.1
TypemRNA
OrganismBrassica rapa chifu (field mustard)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01contigA01:2076070..2076953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica rapa chifu OGS3.52021-11-28
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BraA01g004360.3.5CBraA01g004360.3.5CBrassica rapa chifugeneA01 2076070..2076953 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BraA01g004360.3.5C.1BraA01g004360.3.5C.1-P1Brassica rapa chifupolypeptideA01 2076070..2076953 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BraA01g004360.3.5C.1.exon4BraA01g004360.3.5C.1.exon4Brassica rapa chifuexonA01 2076070..2076171 -
BraA01g004360.3.5C.1.exon3BraA01g004360.3.5C.1.exon3Brassica rapa chifuexonA01 2076248..2076355 -
BraA01g004360.3.5C.1.exon2BraA01g004360.3.5C.1.exon2Brassica rapa chifuexonA01 2076431..2076570 -
BraA01g004360.3.5C.1.exon1BraA01g004360.3.5C.1.exon1Brassica rapa chifuexonA01 2076893..2076953 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
cds.BraA01g004360.3.5C.1cds.BraA01g004360.3.5C.1Brassica rapa chifuCDSA01 2076893..2076953 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BraA01g004360.3.5C.1 ID=BraA01g004360.3.5C.1|Name=BraA01g004360.3.5C.1|organism=Brassica rapa chifu|type=mRNA|length=411bp|location=Sequence derived from alignment at A01:2076070..2076953- (Brassica rapa chifu)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGTCACTCTTTTGGTTGCAGACACCGTCTGGTCGAACATCGAATC
TACAGGCTCAGATGGAACATTAAAGTGTATTGTCTGGAAACTCAGCTTGC
ATTTGTTGTTTGGTAAGAACCTTGAGAAAGCGACCAGAATAATCGACAAG
AGAGGCGTCAAGAAAATCTCTGGCTTACCCAGTGGAAGATCCATCTTTCA
GGTTGTTGGAGAATCTCAAAAGAGGGAAGAGTATCTCTGCTTCCCGGGAG
ATTACTGTGGATGCTATTCTTTCTTCTATGATGTTGTTAGCAGAGGAGAG
CAACAATGTTGTAAGCATCAATTGGCTGCGAGGCTGGCTTTTTCTTTGGG
TGCATACAGCGAGATTGAGGTATCAGATGAGCATCTTGCCGTGATGCTTT
CAAAGATCTGA
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protein sequence of BraA01g004360.3.5C.1

>BraA01g004360.3.5C.1-P1 ID=BraA01g004360.3.5C.1-P1|Name=BraA01g004360.3.5C.1|organism=Brassica rapa chifu|type=polypeptide|length=137bp
MSVTLLVADTVWSNIESTGSDGTLKCIVWKLSLHLLFGKNLEKATRIIDK
RGVKKISGLPSGRSIFQVVGESQKREEYLCFPGDYCGCYSFFYDVVSRGE
QQCCKHQLAARLAFSLGAYSEIEVSDEHLAVMLSKI.
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mRNA from alignment at A01:2076070..2076953-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BraA01g004360.3.5C.1 ID=BraA01g004360.3.5C.1|Name=BraA01g004360.3.5C.1|organism=Brassica rapa chifu|type=mRNA|length=884bp|location=Sequence derived from alignment at A01:2076070..2076953- (Brassica rapa chifu)
ATGAGCGTCACTCTTTTGGTTGCAGACACCGTCTGGTCGAACATCGAATC
TACAGGCTCAGGTATTTCACCATCATGATCCGTCATTTTTTACTTCTTCT
TCTTCTCTCTTTCCTTCTCTCGTTTACGAGATCTTTTTCCTTGATTTTTT
TTTTTTTTTTTTTTGGCAGTAACTGAAGAACAGCTCTCAGTGTCAGTTCT
CCTGTTTCCAGTTCCCTCTTATTCTTGATAAATGACTTATATATTATTTA
AGTCTGGTTATTGTGTAATTTTGTATTGATTTAGCTCAGTCTTTTGTATA
GTGGATACCGGTTAGAGTTTTAGTGTAAAACATAACTCTTAAACTTATCA
AAGCCTTTAAAAAAATGTAATGGGGATTTTGAGATGGAACATTAAAGTGT
ATTGTCTGGAAACTCAGCTTGCATTTGTTGTTTGGTAAGAACCTTGAGAA
AGCGACCAGAATAATCGACAAGAGAGGCGTCAAGAAAATCTCTGGCTTAC
CCAGTGGAAGATCCATCTTTCAGGTCTTCTTCACACAATCAACATTGACT
CGATGTCTAAGAACATTGGTTTATTTGTTTGTTTGTGTTGTTTTACAGGT
TGTTGGAGAATCTCAAAAGAGGGAAGAGTATCTCTGCTTCCCGGGAGATT
ACTGTGGATGCTATTCTTTCTTCTATGATGTTGTTAGCAGAGGAGAGCAA
CAATGTGTAAGATTCTTAATCATCAGAGGTTTGAATTTTAGTACTGCTAC
TGACTTTTTTCTACTTATTGCTTTTGGCAAAGTGTAAGCATCAATTGGCT
GCGAGGCTGGCTTTTTCTTTGGGTGCATACAGCGAGATTGAGGTATCAGA
TGAGCATCTTGCCGTGATGCTTTCAAAGATCTGA
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Coding sequence (CDS) from alignment at A01:2076070..2076953-

>BraA01g004360.3.5C.1 ID=BraA01g004360.3.5C.1|Name=BraA01g004360.3.5C.1|organism=Brassica rapa chifu|type=CDS|length=411bp|location=Sequence derived from alignment at A01:2076070..2076953- (Brassica rapa chifu)
ATGAGCGTCACTCTTTTGGTTGCAGACACCGTCTGGTCGAACATCGAATC
TACAGGCTCAGATGGAACATTAAAGTGTATTGTCTGGAAACTCAGCTTGC
ATTTGTTGTTTGGTAAGAACCTTGAGAAAGCGACCAGAATAATCGACAAG
AGAGGCGTCAAGAAAATCTCTGGCTTACCCAGTGGAAGATCCATCTTTCA
GGTTGTTGGAGAATCTCAAAAGAGGGAAGAGTATCTCTGCTTCCCGGGAG
ATTACTGTGGATGCTATTCTTTCTTCTATGATGTTGTTAGCAGAGGAGAG
CAACAATGTTGTAAGCATCAATTGGCTGCGAGGCTGGCTTTTTCTTTGGG
TGCATACAGCGAGATTGAGGTATCAGATGAGCATCTTGCCGTGATGCTTT
CAAAGATCTGA
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