BraA01g001100.3.5C.14 (mRNA) Brassica rapa chifu

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	BraA01g001100.3.5C.14
Unique Name	BraA01g001100.3.5C.14
Type	mRNA
Organism	Brassica rapa chifu (field mustard)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
BraA01g001100.3.5C	BraA01g001100.3.5C	Brassica rapa chifu	gene	A01 531554..535325 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BraA01g001100.3.5C.14.utr5p1	BraA01g001100.3.5C.14.utr5p1	Brassica rapa chifu	five_prime_UTR	A01 531696..531779 +
BraA01g001100.3.5C.14.utr5p2	BraA01g001100.3.5C.14.utr5p2	Brassica rapa chifu	five_prime_UTR	A01 531893..531905 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BraA01g001100.3.5C.14.exon1	BraA01g001100.3.5C.14.exon1	Brassica rapa chifu	exon	A01 531696..531779 +
BraA01g001100.3.5C.14.exon2	BraA01g001100.3.5C.14.exon2	Brassica rapa chifu	exon	A01 531893..532177 +
BraA01g001100.3.5C.14.exon3	BraA01g001100.3.5C.14.exon3	Brassica rapa chifu	exon	A01 532557..532907 +
BraA01g001100.3.5C.14.exon4	BraA01g001100.3.5C.14.exon4	Brassica rapa chifu	exon	A01 533001..533085 +
BraA01g001100.3.5C.14.exon5	BraA01g001100.3.5C.14.exon5	Brassica rapa chifu	exon	A01 533170..533270 +
BraA01g001100.3.5C.14.exon6	BraA01g001100.3.5C.14.exon6	Brassica rapa chifu	exon	A01 533345..533643 +
BraA01g001100.3.5C.14.exon7	BraA01g001100.3.5C.14.exon7	Brassica rapa chifu	exon	A01 533726..533899 +
BraA01g001100.3.5C.14.exon8	BraA01g001100.3.5C.14.exon8	Brassica rapa chifu	exon	A01 534125..534190 +
BraA01g001100.3.5C.14.exon9	BraA01g001100.3.5C.14.exon9	Brassica rapa chifu	exon	A01 534286..534803 +
BraA01g001100.3.5C.14.exon10	BraA01g001100.3.5C.14.exon10	Brassica rapa chifu	exon	A01 534879..535299 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
cds.BraA01g001100.3.5C.14	cds.BraA01g001100.3.5C.14	Brassica rapa chifu	CDS	A01 531906..532177 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BraA01g001100.3.5C.14.utr3p1	BraA01g001100.3.5C.14.utr3p1	Brassica rapa chifu	three_prime_UTR	A01 535023..535299 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
BraA01g001100.3.5C.14	BraA01g001100.3.5C.14-P1	Brassica rapa chifu	polypeptide	A01 531906..535022 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at A01:531696..535299+
coding sequence from alignment at A01:531696..535299+

spliced messenger RNA

>BraA01g001100.3.5C.14 ID=BraA01g001100.3.5C.14|Name=BraA01g001100.3.5C.14|organism=Brassica rapa chifu|type=mRNA|length=2384bp|location=Sequence derived from alignment at A01:531696..535299+ (Brassica rapa chifu)|Notes=Excludes all bases but those of type(s): exon.  
GCATCATTTCATCGTCTCTTCCATACACTTCAAATGATCTTCTCCTCTGA
TCATTAATCTCTTTAATCTTTCTCAAGTCTTCTTGTAACGGAAAAAGATG
TCGGCAGGTAACGGAAATGCTAACGGTGACGGAGGCTTCAGCTTCCCTAA
AGGACCAGCGATGCCGAAGATAACGACGGGAGCTAAGAGGGGTAGCGAAA
TATGCCACGATGACAGTGGTCCGACGGTGAAGGCGACGACGATCGATGAG
CTTCACTCGTTGCAGAAGAAGCGTTCTGCTCCCACCACACCTATTAACCA
GAGCGGCGCCGCCGCTTTCGCCGCCGTCTCGGAGGAAGAGCGCCAGAAGA
TTCAACTCCAGTCTATCAGTGCATCATTGGCGTCGTTGACGAGAGAGTCT
GGACCCAAAGTGGTGAGAGGAGATCCGGCGGAGAAGAAGGCCGACGGTTC
AACTACTCCGGCGTACGCACACGGCCAGCATCACTCCATCTTCTCTCCGG
ACTTAGGAGCAGTCAGTGACAGCTCCTTGAAATTCACCCACGTCCTCTAC
AACCTCTCCCCTGCAGAGCTCTACGAGCAGGCTATCAAGTACGAGAAAGG
CTCGTTCATCACTTCCAATGGAGCTCTGGCGACTCTTTCCGGTGCGAAAA
CTGGTCGTGCTCCGAGGGATAAGCGTGTCGTTAGAGATGCCACGACAGAG
GGCGAGCTTTGGTGGGGAAAGGGTTCGCCTAATATCGAGATGGATGAACA
TACCTTCATGGTGAACAGAGAAAGAGCTGTTGATTACTTGAACTCCTTGG
AAAAGGTGTTTGTGAATGATCAGTTCTTGAACTGGGACCCGGAGAACAGA
ATCAAAGTCAGAATCGTCTCAGCTAGAGCTTACCACTCTCTCTTCATGCA
CAACATGTGTATCCGACCAACTCCCGAGGAGCTTGAGAGCTTCGGTACTC
CGGACTTCACTATATACAACGCTGGGCAGTTTCCGTGTAACCGTTACACT
CACTACATGACTTCCTCCACTAGCGTAGACCTGAATCTCAGTAGGAGGGA
GATGGTTATACTGGGAACTCAGTATGCTGGTGAGATGAAGAAGGGTCTCT
TCAGCGTGATGCATTACCTTATGCCTAAGCGTCGGATCCTCTCCCTTCAC
TCTGGTTGCAATATGGGCAAAGAGGGAGATGTTGCTCTCTTCTTTGGACT
CTCAGGGACTGGGAAGACAACGCTGTCTACTGATCACAACAGGTACCTGA
TAGGAGATGATGAGCACTGTTGGACTGAGACTGGTGTCTCGAACATTGAG
GGTGGATGCTATGCTAAGTGCGTTGATCTTTCTAGGGAGAAGGAGCCTGA
TATCTGGAACGCTATCAAGTTTGGAACAGTTTTGGAAAATGTTGTGTTTG
ATGAGCACACCAGAGAAGTGGATTATTCTGATAAATCCGTTACCGAGAAC
ACACGTGCTGCTTACCCTATTGAGTTCATTCCAAACGCGAAAATACCTTG
CGTTGGTCCACACCCCAAGAATGTGATTCTTCTGGCATGTGATGCCTTTG
GTGTTCTCCCACCTGTGAGCAAGCTGAACCTGGCGCAAACCATGTACCAC
TTCATTAGTGGTTACACTGCTCTGGTTGCTGGGACAGAGGACGGTATCAA
GGAGCCAACAGCTACATTCTCAGCATGCTTTGGTGCAGCTTTCATAATGC
TGCATCCTACAAAGTACGCAGCTATGTTGGCCGAGAAGATGAAGACGCAA
GGCGCTACTGGATGGCTCGTTAACACTGGTTGGTCCGGTGGCAGCTATGG
AGTTGGAAACAGGATCAAGCTGGCGTATACTAGGAAGATCATCGATGCAA
TCCATTCAGGTAGCTTGTTGAAGGCGAACTACAAGAAGACGGAGATATTT
GGGTTTGAAATCCCAACTGAGATCGAAGGGATACCTTCAGAGATCTTGGA
TCCGATCAACTCGTGGTCTGATAAGAAAGCACATAAGGAGACTCTGTTGA
AGCTGGGAGGTTTGTTCAAGAAGAACTTTGAGACGTTCGCTAACCACAAG
ATTGGTGTGGATGGTAAGCTCACGGAGGAGATTCTCGCTGCTGGTCCTAT
CTTTTAAGAGAGAACTACTATGATGTTGTCGAAACAAACAAGAAGAAGAT
ATTATCAAGAATAAAATGTGACTTGTGTGTTGTATCTCTTTGTCCGAGTT
ATTTTATATGAAGTGGTTACTTTCGAGCAAAAGAACTTCCAAATATGGTG
GATATGAAATATGACCTTATGTTATTTGATTTTCATATATTGTCGTCATT
TATTTTTTCCTTAGTCTCTTACGAGAGATATTCTTCTGTTTTATTTTCCA
ATGAACAAGAAAAATTTAAGAGGAAATTAGTTTC

protein sequence of BraA01g001100.3.5C.14

>BraA01g001100.3.5C.14-P1 ID=BraA01g001100.3.5C.14-P1|Name=BraA01g001100.3.5C.14|organism=Brassica rapa chifu|type=polypeptide|length=670bp
MSAGNGNANGDGGFSFPKGPAMPKITTGAKRGSEICHDDSGPTVKATTID
ELHSLQKKRSAPTTPINQSGAAAFAAVSEEERQKIQLQSISASLASLTRE
SGPKVVRGDPAEKKADGSTTPAYAHGQHHSIFSPDLGAVSDSSLKFTHVL
YNLSPAELYEQAIKYEKGSFITSNGALATLSGAKTGRAPRDKRVVRDATT
EGELWWGKGSPNIEMDEHTFMVNRERAVDYLNSLEKVFVNDQFLNWDPEN
RIKVRIVSARAYHSLFMHNMCIRPTPEELESFGTPDFTIYNAGQFPCNRY
THYMTSSTSVDLNLSRREMVILGTQYAGEMKKGLFSVMHYLMPKRRILSL
HSGCNMGKEGDVALFFGLSGTGKTTLSTDHNRYLIGDDEHCWTETGVSNI
EGGCYAKCVDLSREKEPDIWNAIKFGTVLENVVFDEHTREVDYSDKSVTE
NTRAAYPIEFIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMY
HFISGYTALVAGTEDGIKEPTATFSACFGAAFIMLHPTKYAAMLAEKMKT
QGATGWLVNTGWSGGSYGVGNRIKLAYTRKIIDAIHSGSLLKANYKKTEI
FGFEIPTEIEGIPSEILDPINSWSDKKAHKETLLKLGGLFKKNFETFANH
KIGVDGKLTEEILAAGPIF.

mRNA from alignment at A01:531696..535299+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>BraA01g001100.3.5C.14 ID=BraA01g001100.3.5C.14|Name=BraA01g001100.3.5C.14|organism=Brassica rapa chifu|type=mRNA|length=3604bp|location=Sequence derived from alignment at A01:531696..535299+ (Brassica rapa chifu)
GCATCATTTCATCGTCTCTTCCATACACTTCAAATGATCTTCTCCTCTGA
TCATTAATCTCTTTAATCTTTCTCAAGTCTTCTTGTTCGTGATCTCTCTT
CCTTCCCCCGGTAATAATAATTAACGTCGACAGTGATTTGTAACTACAGT
GTAACGTTCAGACTTAGGAGTTAATAAGTTTTTGTCTGTTGTTGTAGGTA
ACGGAAAAAGATGTCGGCAGGTAACGGAAATGCTAACGGTGACGGAGGCT
TCAGCTTCCCTAAAGGACCAGCGATGCCGAAGATAACGACGGGAGCTAAG
AGGGGTAGCGAAATATGCCACGATGACAGTGGTCCGACGGTGAAGGCGAC
GACGATCGATGAGCTTCACTCGTTGCAGAAGAAGCGTTCTGCTCCCACCA
CACCTATTAACCAGAGCGGCGCCGCCGCTTTCGCCGCCGTCTCGGAGGAA
GAGCGCCAGAAGATTCAACTCCAGTCTATCAGGTCCATTATTAACACATG
ACGTTACAAATTTTTATAACCATTTTCTTGGCTGTTTTCTTTATTTTAAA
AAAAATTATATCGAATTAAACAAGATATTGCGTTTTCGTGTCCATCATTT
TCATAAAAAACAGAACAAAATCAGGAGTTTTGTTTTCTTATTTTTAGAAT
TGTCTATAGCCAGATATATTTATATTTAATTTATTAAAAAAATATCTAAG
CGTTACTCGTTTTACGTTTTTTACTCAATATGTTATTTATTTTGTTGTAC
GGATTATTTAAAGAGAATTTAATGCGCCACAGCGACAGTTACCCGATGAA
ATATTTAAGTACATGACACGTGTAATAAATTGACACGTAACTTTAATTTT
GACGCACATAGTGCATCATTGGCGTCGTTGACGAGAGAGTCTGGACCCAA
AGTGGTGAGAGGAGATCCGGCGGAGAAGAAGGCCGACGGTTCAACTACTC
CGGCGTACGCACACGGCCAGCATCACTCCATCTTCTCTCCGGACTTAGGA
GCAGTCAGTGACAGCTCCTTGAAATTCACCCACGTCCTCTACAACCTCTC
CCCTGCAGAGCTCTACGAGCAGGCTATCAAGTACGAGAAAGGCTCGTTCA
TCACTTCCAATGGAGCTCTGGCGACTCTTTCCGGTGCGAAAACTGGTCGT
GCTCCGAGGGATAAGCGTGTCGTTAGAGATGCCACGACAGAGGGCGAGCT
TTGGTGGGGAAAGTGAGTATTATCCTCTGTTTTCCTCTGTTTTCCTCTGT
TTCAGTTTTTGATGGAATGTTCAAAGATTTGATCTTTTTCGAAATTTTGA
ATTAGGGGTTCGCCTAATATCGAGATGGATGAACATACCTTCATGGTGAA
CAGAGAAAGAGCTGTTGATTACTTGAACTCCTTGGAAAAGGTATAAACTT
GAAACACAACCTCTGTAAGCTTTTGAGTTTTGGTCTTAGTTAATGAACTA
GCTGTTACTGTTTGGGGTTGTTAGGTGTTTGTGAATGATCAGTTCTTGAA
CTGGGACCCGGAGAACAGAATCAAAGTCAGAATCGTCTCAGCTAGAGCTT
ACCACTCTCTCTTCATGCACAACATGTAAGTCAAAACACCTTTCCTTTTA
TTGTTTACAAACAACAATGTGTCCCCCTCTTGATTCCGCCGTTGGGCAGG
TGTATCCGACCAACTCCCGAGGAGCTTGAGAGCTTCGGTACTCCGGACTT
CACTATATACAACGCTGGGCAGTTTCCGTGTAACCGTTACACTCACTACA
TGACTTCCTCCACTAGCGTAGACCTGAATCTCAGTAGGAGGGAGATGGTT
ATACTGGGAACTCAGTATGCTGGTGAGATGAAGAAGGGTCTCTTCAGCGT
GATGCATTACCTTATGCCTAAGCGTCGGATCCTCTCCCTTCACTCTGGTT
GCAATATGGGCAAAGAGGGAGATGTTGCTCTCTTCTTTGGACTCTCAGGT
ATAGTGGTAGTGTGGTGGTGAAGGGAAGAAGATAAGGGACTGCGGTTGAG
ATTGATGGTTGTTTTGTTTTTTTGTTTCAGGGACTGGGAAGACAACGCTG
TCTACTGATCACAACAGGTACCTGATAGGAGATGATGAGCACTGTTGGAC
TGAGACTGGTGTCTCGAACATTGAGGGTGGATGCTATGCTAAGTGCGTTG
ATCTTTCTAGGGAGAAGGAGCCTGATATCTGGAACGCTATCAAGTTTGGA
ACAGGTAAAGAACACACAAATCTATTGGATTGTTTAATTTTGATAATTCA
TCACAATAACTTTATAATTAAACTTAAAAACTAAAAATGTCATATAAATG
TATAAAATATATAAAACAAATCTACAATTTGCTAACGCATGCCTAGCCGG
TAGTCCTCTATAAAGCGGCTAGCGATTTTTAGAACATTGGAGATAACAAT
AGAGTTTTTTTGTTTATCTTTGTATGCAGTTTTGGAAAATGTTGTGTTTG
ATGAGCACACCAGAGAAGTGGATTATTCTGATAAATCCGTTACCGGTAAA
AAAATAAATAATGTTTTTCTTATTTTTTTTCTCAACTTTTTTTTTTAACA
ATCAACCGAATGATCATCGTTGATTCTCCTTGTCTTGCAGAGAACACACG
TGCTGCTTACCCTATTGAGTTCATTCCAAACGCGAAAATACCTTGCGTTG
GTCCACACCCCAAGAATGTGATTCTTCTGGCATGTGATGCCTTTGGTGTT
CTCCCACCTGTGAGCAAGCTGAACCTGGCGCAAACCATGTACCACTTCAT
TAGTGGTTACACTGCTCTGGTTGCTGGGACAGAGGACGGTATCAAGGAGC
CAACAGCTACATTCTCAGCATGCTTTGGTGCAGCTTTCATAATGCTGCAT
CCTACAAAGTACGCAGCTATGTTGGCCGAGAAGATGAAGACGCAAGGCGC
TACTGGATGGCTCGTTAACACTGGTTGGTCCGGTGGCAGCTATGGAGTTG
GAAACAGGATCAAGCTGGCGTATACTAGGAAGATCATCGATGCAATCCAT
TCAGGTAGCTTGTTGAAGGCGAACTACAAGAAGACGGAGATATTTGGGTT
TGAAATCCCAACTGAGATCGAAGGGATACCTTCAGAGATCTTGGATCCGA
TCAACTCGGTTAGTTTCTGCCAAAAAACTCTCTTTAACTTGTTAGAATTG
GTAGCTGATGATGAATGATATTTGTTTTTGCAGTGGTCTGATAAGAAAGC
ACATAAGGAGACTCTGTTGAAGCTGGGAGGTTTGTTCAAGAAGAACTTTG
AGACGTTCGCTAACCACAAGATTGGTGTGGATGGTAAGCTCACGGAGGAG
ATTCTCGCTGCTGGTCCTATCTTTTAAGAGAGAACTACTATGATGTTGTC
GAAACAAACAAGAAGAAGATATTATCAAGAATAAAATGTGACTTGTGTGT
TGTATCTCTTTGTCCGAGTTATTTTATATGAAGTGGTTACTTTCGAGCAA
AAGAACTTCCAAATATGGTGGATATGAAATATGACCTTATGTTATTTGAT
TTTCATATATTGTCGTCATTTATTTTTTCCTTAGTCTCTTACGAGAGATA
TTCTTCTGTTTTATTTTCCAATGAACAAGAAAAATTTAAGAGGAAATTAG
TTTC

Coding sequence (CDS) from alignment at A01:531696..535299+

>BraA01g001100.3.5C.14 ID=BraA01g001100.3.5C.14|Name=BraA01g001100.3.5C.14|organism=Brassica rapa chifu|type=CDS|length=2010bp|location=Sequence derived from alignment at A01:531696..535299+ (Brassica rapa chifu)
ATGTCGGCAGGTAACGGAAATGCTAACGGTGACGGAGGCTTCAGCTTCCC
TAAAGGACCAGCGATGCCGAAGATAACGACGGGAGCTAAGAGGGGTAGCG
AAATATGCCACGATGACAGTGGTCCGACGGTGAAGGCGACGACGATCGAT
GAGCTTCACTCGTTGCAGAAGAAGCGTTCTGCTCCCACCACACCTATTAA
CCAGAGCGGCGCCGCCGCTTTCGCCGCCGTCTCGGAGGAAGAGCGCCAGA
AGATTCAACTCCAGTCTATCAGTGCATCATTGGCGTCGTTGACGAGAGAG
TCTGGACCCAAAGTGGTGAGAGGAGATCCGGCGGAGAAGAAGGCCGACGG
TTCAACTACTCCGGCGTACGCACACGGCCAGCATCACTCCATCTTCTCTC
CGGACTTAGGAGCAGTCAGTGACAGCTCCTTGAAATTCACCCACGTCCTC
TACAACCTCTCCCCTGCAGAGCTCTACGAGCAGGCTATCAAGTACGAGAA
AGGCTCGTTCATCACTTCCAATGGAGCTCTGGCGACTCTTTCCGGTGCGA
AAACTGGTCGTGCTCCGAGGGATAAGCGTGTCGTTAGAGATGCCACGACA
GAGGGCGAGCTTTGGTGGGGAAAGGGTTCGCCTAATATCGAGATGGATGA
ACATACCTTCATGGTGAACAGAGAAAGAGCTGTTGATTACTTGAACTCCT
TGGAAAAGGTGTTTGTGAATGATCAGTTCTTGAACTGGGACCCGGAGAAC
AGAATCAAAGTCAGAATCGTCTCAGCTAGAGCTTACCACTCTCTCTTCAT
GCACAACATGTGTATCCGACCAACTCCCGAGGAGCTTGAGAGCTTCGGTA
CTCCGGACTTCACTATATACAACGCTGGGCAGTTTCCGTGTAACCGTTAC
ACTCACTACATGACTTCCTCCACTAGCGTAGACCTGAATCTCAGTAGGAG
GGAGATGGTTATACTGGGAACTCAGTATGCTGGTGAGATGAAGAAGGGTC
TCTTCAGCGTGATGCATTACCTTATGCCTAAGCGTCGGATCCTCTCCCTT
CACTCTGGTTGCAATATGGGCAAAGAGGGAGATGTTGCTCTCTTCTTTGG
ACTCTCAGGGACTGGGAAGACAACGCTGTCTACTGATCACAACAGGTACC
TGATAGGAGATGATGAGCACTGTTGGACTGAGACTGGTGTCTCGAACATT
GAGGGTGGATGCTATGCTAAGTGCGTTGATCTTTCTAGGGAGAAGGAGCC
TGATATCTGGAACGCTATCAAGTTTGGAACAGTTTTGGAAAATGTTGTGT
TTGATGAGCACACCAGAGAAGTGGATTATTCTGATAAATCCGTTACCGAG
AACACACGTGCTGCTTACCCTATTGAGTTCATTCCAAACGCGAAAATACC
TTGCGTTGGTCCACACCCCAAGAATGTGATTCTTCTGGCATGTGATGCCT
TTGGTGTTCTCCCACCTGTGAGCAAGCTGAACCTGGCGCAAACCATGTAC
CACTTCATTAGTGGTTACACTGCTCTGGTTGCTGGGACAGAGGACGGTAT
CAAGGAGCCAACAGCTACATTCTCAGCATGCTTTGGTGCAGCTTTCATAA
TGCTGCATCCTACAAAGTACGCAGCTATGTTGGCCGAGAAGATGAAGACG
CAAGGCGCTACTGGATGGCTCGTTAACACTGGTTGGTCCGGTGGCAGCTA
TGGAGTTGGAAACAGGATCAAGCTGGCGTATACTAGGAAGATCATCGATG
CAATCCATTCAGGTAGCTTGTTGAAGGCGAACTACAAGAAGACGGAGATA
TTTGGGTTTGAAATCCCAACTGAGATCGAAGGGATACCTTCAGAGATCTT
GGATCCGATCAACTCGTGGTCTGATAAGAAAGCACATAAGGAGACTCTGT
TGAAGCTGGGAGGTTTGTTCAAGAAGAACTTTGAGACGTTCGCTAACCAC
AAGATTGGTGTGGATGGTAAGCTCACGGAGGAGATTCTCGCTGCTGGTCC
TATCTTTTAA