BraAnng004290.3.5C.1-P1 (polypeptide) Brassica rapa chifu

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBraAnng004290.3.5C.1
Unique NameBraAnng004290.3.5C.1-P1
Typepolypeptide
OrganismBrassica rapa chifu (field mustard)
Sequence length137
Homology
[Close]
BLAST of BraAnng004290.3.5C.1 vs. GenBank_protein
Match: YP_004927514.1 (orf117a [Brassica oleracea] >YP_004927760.1 orf117a [Brassica juncea] >YP_004927857.1 orf117a [Brassica rapa subsp. oleifera] >YP_009907468.1 hypothetical protein [Brassica rapa] >YP_717139.1 hypothetical protein BrnapMp042 [Brassica napus] >AHY20336.1 hypothetical protein [Brassica juncea var. tumida] >AEH43431.1 orf117a [Brassica rapa subsp. oleifera] >AEH43542.1 orf117a [Brassica oleracea] >AEH43655.1 orf117a [Brassica juncea] >AIZ06186.1 hypothetical protein [Brassica napus])

HSP 1 Score: 157 bits (396), Expect = 1.170e-46
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 
Query:   57 ENLAQSNGSNGSDYDRTTRKNNDESHHAIQELNAKMDKILKRDQKMTVNSCEEYGGYQGYQDFGVEGYEEPQEELNYVGG 136
            ENLAQSNGSNGSDYDRTTRKNNDESHHAIQELNAKMDKILKRDQKMTVNSCEEYGGYQGYQDFGVEGYEEPQEELNYVGG
Sbjct:   15 ENLAQSNGSNGSDYDRTTRKNNDESHHAIQELNAKMDKILKRDQKMTVNSCEEYGGYQGYQDFGVEGYEEPQEELNYVGG 94
[Close]
BLAST of BraAnng004290.3.5C.1 vs. GenBank_protein
Match: AGY62805.1 (orf117 [Eruca vesicaria subsp. sativa])

HSP 1 Score: 157 bits (396), Expect = 1.170e-46
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 
Query:   57 ENLAQSNGSNGSDYDRTTRKNNDESHHAIQELNAKMDKILKRDQKMTVNSCEEYGGYQGYQDFGVEGYEEPQEELNYVGG 136
            ENLAQSNGSNGSDYDRTTRKNNDESHHAIQELNAKMDKILKRDQKMTVNSCEEYGGYQGYQDFGVEGYEEPQEELNYVGG
Sbjct:   15 ENLAQSNGSNGSDYDRTTRKNNDESHHAIQELNAKMDKILKRDQKMTVNSCEEYGGYQGYQDFGVEGYEEPQEELNYVGG 94
[Close]
BLAST of BraAnng004290.3.5C.1 vs. GenBank_protein
Match: KAG2247420.1 (hypothetical protein Bca52824_087048 [Brassica carinata])

HSP 1 Score: 117 bits (293), Expect = 1.250e-31
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 
Query:    1 MEGSLESYPFPSNINITSCVSIKLNDRNYLLYDEGRVRLSPPNLGERCDFEERQSS 56
            MEGSLESYPFPSNINITSCVSIKLNDRNYLLYDEGRVRLSPPNLGERCDFEERQSS
Sbjct:    1 MEGSLESYPFPSNINITSCVSIKLNDRNYLLYDEGRVRLSPPNLGERCDFEERQSS 56
[Close]
BLAST of BraAnng004290.3.5C.1 vs. GenBank_protein
Match: QGW48293.1 (hypothetical protein [Raphanus sativus] >QGW48515.1 hypothetical protein [Raphanus sativus])

HSP 1 Score: 117 bits (293), Expect = 1.600e-31
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 
Query:    1 MEGSLESYPFPSNINITSCVSIKLNDRNYLLYDEGRVRLSPPNLGERCDFEERQSS 56
            MEGSLESYPFPSNINITSCVSIKLNDRNYLLYDEGRVRLSPPNLGERCDFEERQSS
Sbjct:   10 MEGSLESYPFPSNINITSCVSIKLNDRNYLLYDEGRVRLSPPNLGERCDFEERQSS 65
[Close]
BLAST of BraAnng004290.3.5C.1 vs. GenBank_protein
Match: CDY45512.1 (BnaCnng12710D [Brassica napus] >VDD23994.1 unnamed protein product [Brassica rapa] >VDD25066.1 unnamed protein product [Brassica rapa] >VDD65152.1 unnamed protein product [Brassica oleracea] >VDD65186.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 117 bits (293), Expect = 1.300e-30
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 
Query:    1 MEGSLESYPFPSNINITSCVSIKLNDRNYLLYDEGRVRLSPPNLGERCDFEERQSS 56
            MEGSLESYPFPSNINITSCVSIKLNDRNYLLYDEGRVRLSPPNLGERCDFEERQSS
Sbjct:   82 MEGSLESYPFPSNINITSCVSIKLNDRNYLLYDEGRVRLSPPNLGERCDFEERQSS 137
[Close]
BLAST of BraAnng004290.3.5C.1 vs. GenBank_protein
Match: VDD51071.1 (unnamed protein product, partial [Brassica oleracea])

HSP 1 Score: 114 bits (285), Expect = 3.820e-30
Identity = 59/66 (89.39%), Postives = 60/66 (90.91%), Query Frame = 0 
Query:    1 MEGSLESYPFPSNINITSCVSIKLNDRNYLLYDEGRVRLSPPNLGERCDFEERQSS---ENLAQSN 63
            MEGSLESY FPSNINITSCVSIKLNDRNYLLYDEGRVRLSPPNLGERCDFEE QSS   ENL +SN
Sbjct:   23 MEGSLESYHFPSNINITSCVSIKLNDRNYLLYDEGRVRLSPPNLGERCDFEEHQSSGVYENLHESN 88
[Close]
BLAST of BraAnng004290.3.5C.1 vs. GenBank_protein
Match: CAF2075092.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 114 bits (285), Expect = 2.120e-29
Identity = 59/66 (89.39%), Postives = 60/66 (90.91%), Query Frame = 0 
Query:    1 MEGSLESYPFPSNINITSCVSIKLNDRNYLLYDEGRVRLSPPNLGERCDFEERQSS---ENLAQSN 63
            MEGSLESY FPSNINITSCVSIKLNDRNYLLYDEGRVRLSPPNLGERCDFEE QSS   ENL +SN
Sbjct:   82 MEGSLESYHFPSNINITSCVSIKLNDRNYLLYDEGRVRLSPPNLGERCDFEEHQSSGVYENLHESN 147
[Close]
BLAST of BraAnng004290.3.5C.1 vs. GenBank_protein
Match: P92518.1 (RecName: Full=Uncharacterized mitochondrial protein AtMg00770; AltName: Full=ORF100b [Arabidopsis thaliana] >AAM15420.1 hypothetical protein [Arabidopsis thaliana] >CAA69822.1 unnamed protein product [Arabidopsis thaliana])

HSP 1 Score: 99.4 bits (246), Expect = 4.330e-24
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 0 
Query:    1 MEGSLESYPFPSNINITSCVSIKLNDRNYLLYDEGRVRLSPPNLGERCDF 50
            MEGSL+SYPFPSNINITSCVSIKLNDRNYLLYDEGRVRLS  NLGERCDF
Sbjct:   25 MEGSLKSYPFPSNINITSCVSIKLNDRNYLLYDEGRVRLSLLNLGERCDF 74
[Close]
BLAST of BraAnng004290.3.5C.1 vs. GenBank_protein
Match: AAM15513.1 (hypothetical protein, partial [Arabidopsis thaliana])

HSP 1 Score: 97.8 bits (242), Expect = 1.520e-23
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 0 
Query:    1 MEGSLESYPFPSNINITSCVSIKLNDRNYLLYDEGRVRLSPPNLGERCDF 50
            MEGSL+SYPFPSNINITSCVSIKLND+NYLLYDEGRVRLS  NLGERCDF
Sbjct:   25 MEGSLKSYPFPSNINITSCVSIKLNDQNYLLYDEGRVRLSLLNLGERCDF 74
[Close]
BLAST of BraAnng004290.3.5C.1 vs. GenBank_protein
Match: XP_019100934.1 (PREDICTED: uncharacterized protein LOC104789646 [Camelina sativa])

HSP 1 Score: 69.3 bits (168), Expect = 1.290e-10
Identity = 44/80 (55.00%), Postives = 59/80 (73.75%), Query Frame = 0 
Query:   57 ENLAQSNGSNGSDYDRTTRKNNDESHHAIQELNAKMDKILKRDQKMTVNSCEEYGGYQGYQDFGVEGYEEPQEELNYVGG 136
            ENLA SN ++G+DYDRT R N+ ++  AI++L AK++ +LKRD +  VNSCEE  G  GY DFG E Y+E  EE+NY+GG
Sbjct:  530 ENLAASNSNHGTDYDRTVRVNSVDTD-AIKDLTAKVNLLLKRDHQ-GVNSCEEQTG--GYADFGAETYQECAEEVNYIGG 605
The following BLAST results are available for this feature:
BLAST of BraAnng004290.3.5C.1 vs. GenBank_protein
Analysis Date: 2022-02-26 (Diamond on OGS3.5 vs NR)
Total hits: 12
Match NameE-valueIdentityDescription
YP_004927514.11.170e-46100.00orf117a [Brassica oleracea] >YP_004927760.1 orf117... [more]
AGY62805.11.170e-46100.00orf117 [Eruca vesicaria subsp. sativa][more]
KAG2247420.11.250e-31100.00hypothetical protein Bca52824_087048 [Brassica car... [more]
QGW48293.11.600e-31100.00hypothetical protein [Raphanus sativus] >QGW48515.... [more]
CDY45512.11.300e-30100.00BnaCnng12710D [Brassica napus] >VDD23994.1 unnamed... [more]
VDD51071.13.820e-3089.39unnamed protein product, partial [Brassica olerace... [more]
CAF2075092.12.120e-2989.39unnamed protein product [Brassica napus][more]
P92518.14.330e-2494.00RecName: Full=Uncharacterized mitochondrial protei... [more]
AAM15513.11.520e-2392.00hypothetical protein, partial [Arabidopsis thalian... [more]
XP_019100934.11.290e-1055.00PREDICTED: uncharacterized protein LOC104789646 [C... [more]

Pages

back to top
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005739 mitochondrion
InterPro
Analysis Name: InterProScan on OGS3.5
Date Performed: 2022-02-26
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold0881contigScaffold0881:8964..10253 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS3.52022-02-26
Diamond on OGS3.5 vs NR2022-02-26
Blast2GO on OGS3.52022-02-26
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BraAnng004290.3.5C.1BraAnng004290.3.5C.1Brassica rapa chifumRNAScaffold0881 8964..10253 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BraAnng004290.3.5C.1-P1 ID=BraAnng004290.3.5C.1-P1|Name=BraAnng004290.3.5C.1|organism=Brassica rapa chifu|type=polypeptide|length=137bp
MEGSLESYPFPSNINITSCVSIKLNDRNYLLYDEGRVRLSPPNLGERCDF
EERQSSENLAQSNGSNGSDYDRTTRKNNDESHHAIQELNAKMDKILKRDQ
KMTVNSCEEYGGYQGYQDFGVEGYEEPQEELNYVGG.
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion