BraAnng002260.3.5C.1-P1 (polypeptide) Brassica rapa chifu

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBraAnng002260.3.5C.1
Unique NameBraAnng002260.3.5C.1-P1
Typepolypeptide
OrganismBrassica rapa chifu (field mustard)
Sequence length225
Homology
BLAST of BraAnng002260.3.5C.1 vs. GenBank_protein
Match: CAF2224308.1 (unnamed protein product, partial [Brassica napus])

HSP 1 Score: 419 bits (1077), Expect = 1.490e-143
Identity = 207/222 (93.24%), Postives = 213/222 (95.95%), Query Frame = 0
Query:    1 MLPTLSRIQQTGKRSKWPPDHQDIVNSAKHIGLAKFCELLISDWAGRLQIYLWKPGAYDSTLIILGECSARARTSLGNKELEADQNALLLDHVKVWKPPDFQKLQYHFRDCQIKSGDGDFIRENGEVITGAGGGLMFSSQIKEKPPDGLSLHQTSNKQTRGNYLDSKKRMKPDLLSIGTGQTVLSARISEKRGYSNDQSIKNGSLAKLDMQQSNLGSCLAAN 222
            MLPTLS IQQTGKRSKWPPDHQDIVNSAKHIGLAKFCELLISDWAGRLQIYLWKPGAYDSTLIILGECSARA+TS G KELEADQNALLLD+VKVWKPPD QKLQYHFRDCQ KSG+GDF +ENGEVITGAGGGLMFSSQIKEKPPDGLSLHQTSNKQTRGNYL SKKRMKPDLLSIGTGQTVLSARI +KRGYSNDQSIKNG LAKL+MQQSNLGSCLAAN
Sbjct:  175 MLPTLSWIQQTGKRSKWPPDHQDIVNSAKHIGLAKFCELLISDWAGRLQIYLWKPGAYDSTLIILGECSARAKTSWGYKELEADQNALLLDNVKVWKPPDLQKLQYHFRDCQTKSGNGDFTKENGEVITGAGGGLMFSSQIKEKPPDGLSLHQTSNKQTRGNYLHSKKRMKPDLLSIGTGQTVLSARIFKKRGYSNDQSIKNGYLAKLEMQQSNLGSCLAAN 396          
BLAST of BraAnng002260.3.5C.1 vs. GenBank_protein
Match: CAF2320592.1 (unnamed protein product, partial [Brassica napus])

HSP 1 Score: 415 bits (1067), Expect = 2.710e-142
Identity = 205/222 (92.34%), Postives = 207/222 (93.24%), Query Frame = 0
Query:    1 MLPTLSRIQQTGKRSKWPPDHQDIVNSAKHIGLAKFCELLISDWAGRLQIYLWKPGAYDSTLIILGECSARARTSLGNKELEADQNALLLDHVKVWKPPDFQKLQYHFRDCQIKSGDGDFIRENGEVITGAGGGLMFSSQIKEKPPDGLSLHQTSNKQTRGNYLDSKKRMKPDLLSIGTGQTVLSARISEKRGYSNDQSIKNGSLAKLDMQQSNLGSCLAAN 222
            MLPTLS IQQTGK SKWPPDHQDIVNSAKHIGL KFCELLISDW GRLQIYLWKPGAYDSTLIILGECSARARTSLGNKELEADQNALLLDHVKVWKPPD QKLQYHFRDCQIKSGDGDFIR NGEVITG GG LMFSSQ KEKPPDGLSLHQ+ NK  R NYLDSKKRMKPDLLSIGTGQTVLSARI EKRGYSNDQSIKNGSLAKL+MQQSNLGSCLA N
Sbjct:  152 MLPTLSWIQQTGKHSKWPPDHQDIVNSAKHIGLVKFCELLISDWTGRLQIYLWKPGAYDSTLIILGECSARARTSLGNKELEADQNALLLDHVKVWKPPDLQKLQYHFRDCQIKSGDGDFIRVNGEVITGVGGKLMFSSQNKEKPPDGLSLHQSPNKSARDNYLDSKKRMKPDLLSIGTGQTVLSARIFEKRGYSNDQSIKNGSLAKLEMQQSNLGSCLATN 373          
BLAST of BraAnng002260.3.5C.1 vs. GenBank_protein
Match: KAG5374081.1 (hypothetical protein IGI04_042644 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 410 bits (1055), Expect = 8.610e-135
Identity = 203/222 (91.44%), Postives = 209/222 (94.14%), Query Frame = 0
Query:    1 MLPTLSRIQQTGKRSKWPPDHQDIVNSAKHIGLAKFCELLISDWAGRLQIYLWKPGAYDSTLIILGECSARARTSLGNKELEADQNALLLDHVKVWKPPDFQKLQYHFRDCQIKSGDGDFIRENGEVITGAGGGLMFSSQIKEKPPDGLSLHQTSNKQTRGNYLDSKKRMKPDLLSIGTGQTVLSARISEKRGYSNDQSIKNGSLAKLDMQQSNLGSCLAAN 222
            MLPTLS IQQT KRSKWPPDHQDIVNSAKHIGLAKFCELLIS+WAGRLQIYLWKPGAYDSTL+ILGECSARARTSLGNKELEADQNALLLDHVKVWKPPD QKLQYHFRDCQIKSGDGDFIR NGEVITG GG LMFSSQ KEKPPDGLSLHQ+ NK  RGNYLDSKKRMKPDLLSIGTGQTVLSA + E+ GYSNDQSIKNGSLAKL+MQQSNLGSCLAAN
Sbjct:  348 MLPTLSWIQQTVKRSKWPPDHQDIVNSAKHIGLAKFCELLISNWAGRLQIYLWKPGAYDSTLMILGECSARARTSLGNKELEADQNALLLDHVKVWKPPDLQKLQYHFRDCQIKSGDGDFIRVNGEVITGVGGKLMFSSQNKEKPPDGLSLHQSPNKSARGNYLDSKKRMKPDLLSIGTGQTVLSAILFERTGYSNDQSIKNGSLAKLEMQQSNLGSCLAAN 569          
BLAST of BraAnng002260.3.5C.1 vs. GenBank_protein
Match: KAG5374067.1 (hypothetical protein IGI04_042630, partial [Brassica rapa subsp. trilocularis])

HSP 1 Score: 407 bits (1047), Expect = 1.630e-132
Identity = 201/222 (90.54%), Postives = 204/222 (91.89%), Query Frame = 0
Query:    1 MLPTLSRIQQTGKRSKWPPDHQDIVNSAKHIGLAKFCELLISDWAGRLQIYLWKPGAYDSTLIILGECSARARTSLGNKELEADQNALLLDHVKVWKPPDFQKLQYHFRDCQIKSGDGDFIRENGEVITGAGGGLMFSSQIKEKPPDGLSLHQTSNKQTRGNYLDSKKRMKPDLLSIGTGQTVLSARISEKRGYSNDQSIKNGSLAKLDMQQSNLGSCLAAN 222
            MLPTLS IQQTGK SKWPPDHQDIVNSAKHIGL KFCELLISDW GRLQIYLWKPGAYDSTLIILGECSARARTSLGNKELEADQNALLLDHVKVWKPPD QKLQYHFRDCQIKSGDGDFIR N EVITG GG LMFSSQ KEKPPDGLS HQ+ NK  RGNYLDSKKRMKPDLLSIGTGQTVLSARI EKRGYSNDQSI+NG LAKL+MQQ NLGSCLA N
Sbjct:  522 MLPTLSWIQQTGKHSKWPPDHQDIVNSAKHIGLVKFCELLISDWTGRLQIYLWKPGAYDSTLIILGECSARARTSLGNKELEADQNALLLDHVKVWKPPDLQKLQYHFRDCQIKSGDGDFIRVNSEVITGVGGKLMFSSQNKEKPPDGLSQHQSPNKSARGNYLDSKKRMKPDLLSIGTGQTVLSARIFEKRGYSNDQSIQNGYLAKLEMQQPNLGSCLATN 743          
BLAST of BraAnng002260.3.5C.1 vs. GenBank_protein
Match: KAG5373602.1 (hypothetical protein IGI04_043080, partial [Brassica rapa subsp. trilocularis])

HSP 1 Score: 399 bits (1025), Expect = 2.370e-132
Identity = 199/222 (89.64%), Postives = 202/222 (90.99%), Query Frame = 0
Query:    1 MLPTLSRIQQTGKRSKWPPDHQDIVNSAKHIGLAKFCELLISDWAGRLQIYLWKPGAYDSTLIILGECSARARTSLGNKELEADQNALLLDHVKVWKPPDFQKLQYHFRDCQIKSGDGDFIRENGEVITGAGGGLMFSSQIKEKPPDGLSLHQTSNKQTRGNYLDSKKRMKPDLLSIGTGQTVLSARISEKRGYSNDQSIKNGSLAKLDMQQSNLGSCLAAN 222
            MLPTLS IQQT KRSKWPPDHQDIVNSAKHIGL KFCELLISDW GRLQIYLWKPGAYDSTLIILGECSARARTSLGNKELE DQNALLLDHVKVWKPPD QKLQYHFRD Q KSGDGDF R NGEVITG GG LMFSSQIKEKPPDGLSLHQ+ NK TRGNYLDSKKRMKPDLLS GTGQTV+S RI EKRGYS DQSIK GSLAKL+MQ SNLGSCLAAN
Sbjct:  277 MLPTLSWIQQTRKRSKWPPDHQDIVNSAKHIGLVKFCELLISDWTGRLQIYLWKPGAYDSTLIILGECSARARTSLGNKELEPDQNALLLDHVKVWKPPDLQKLQYHFRDYQTKSGDGDFTRLNGEVITGIGGELMFSSQIKEKPPDGLSLHQSPNKPTRGNYLDSKKRMKPDLLSTGTGQTVMSTRIFEKRGYSIDQSIKKGSLAKLEMQLSNLGSCLAAN 498          
BLAST of BraAnng002260.3.5C.1 vs. GenBank_protein
Match: KAG5373808.1 (hypothetical protein IGI04_042863, partial [Brassica rapa subsp. trilocularis])

HSP 1 Score: 399 bits (1024), Expect = 3.180e-132
Identity = 198/222 (89.19%), Postives = 202/222 (90.99%), Query Frame = 0
Query:    1 MLPTLSRIQQTGKRSKWPPDHQDIVNSAKHIGLAKFCELLISDWAGRLQIYLWKPGAYDSTLIILGECSARARTSLGNKELEADQNALLLDHVKVWKPPDFQKLQYHFRDCQIKSGDGDFIRENGEVITGAGGGLMFSSQIKEKPPDGLSLHQTSNKQTRGNYLDSKKRMKPDLLSIGTGQTVLSARISEKRGYSNDQSIKNGSLAKLDMQQSNLGSCLAAN 222
            ML TLS IQQT KRSKWPPDHQDI+NSAKHIGL KFCELLISDW GR+Q YLWK GAY S LIILGECSAR RTS GNKELEADQNALLLDHVKVWKPPD QKLQYHFRDCQ KSGDGDF R NGEVITG GG LMFSSQIKEKPPDGLSLHQ+ NK TRGNYLDSKKRMKPDLLSIGTGQTVLSARI EKRGYSNDQSIKNGSLAKL+MQQSNLGSCLAAN
Sbjct:  270 MLHTLSWIQQTRKRSKWPPDHQDIINSAKHIGLVKFCELLISDWGGRIQFYLWKLGAYASILIILGECSARGRTSWGNKELEADQNALLLDHVKVWKPPDLQKLQYHFRDCQTKSGDGDFTRLNGEVITGIGGELMFSSQIKEKPPDGLSLHQSPNKPTRGNYLDSKKRMKPDLLSIGTGQTVLSARIFEKRGYSNDQSIKNGSLAKLEMQQSNLGSCLAAN 491          
BLAST of BraAnng002260.3.5C.1 vs. GenBank_protein
Match: KAG5373829.1 (hypothetical protein IGI04_042853, partial [Brassica rapa subsp. trilocularis])

HSP 1 Score: 399 bits (1025), Expect = 3.940e-130
Identity = 199/222 (89.64%), Postives = 202/222 (90.99%), Query Frame = 0
Query:    1 MLPTLSRIQQTGKRSKWPPDHQDIVNSAKHIGLAKFCELLISDWAGRLQIYLWKPGAYDSTLIILGECSARARTSLGNKELEADQNALLLDHVKVWKPPDFQKLQYHFRDCQIKSGDGDFIRENGEVITGAGGGLMFSSQIKEKPPDGLSLHQTSNKQTRGNYLDSKKRMKPDLLSIGTGQTVLSARISEKRGYSNDQSIKNGSLAKLDMQQSNLGSCLAAN 222
            MLPTLS IQQT KRSKWPPDHQDIVNSAKHIGL KFCELLISDW GRLQIYLWKPGAYDSTLIILGECSARARTSLGNKELE DQNALLLDHVKVWKPPD QKLQYHFRD Q KSGDGDF R NGEVITG GG LMFSSQIKEKPPDGLSLHQ+ NK TRGNYLDSKKRMKPDLLS GTGQTV+S RI EKRGYS DQSIK GSLAKL+MQ SNLGSCLAAN
Sbjct:  460 MLPTLSWIQQTRKRSKWPPDHQDIVNSAKHIGLVKFCELLISDWTGRLQIYLWKPGAYDSTLIILGECSARARTSLGNKELEPDQNALLLDHVKVWKPPDLQKLQYHFRDYQTKSGDGDFTRLNGEVITGIGGELMFSSQIKEKPPDGLSLHQSPNKPTRGNYLDSKKRMKPDLLSTGTGQTVMSTRIFEKRGYSIDQSIKKGSLAKLEMQLSNLGSCLAAN 681          
BLAST of BraAnng002260.3.5C.1 vs. GenBank_protein
Match: KAG5411328.1 (hypothetical protein IGI04_007647 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 390 bits (1002), Expect = 1.920e-127
Identity = 194/222 (87.39%), Postives = 199/222 (89.64%), Query Frame = 0
Query:    1 MLPTLSRIQQTGKRSKWPPDHQDIVNSAKHIGLAKFCELLISDWAGRLQIYLWKPGAYDSTLIILGECSARARTSLGNKELEADQNALLLDHVKVWKPPDFQKLQYHFRDCQIKSGDGDFIRENGEVITGAGGGLMFSSQIKEKPPDGLSLHQTSNKQTRGNYLDSKKRMKPDLLSIGTGQTVLSARISEKRGYSNDQSIKNGSLAKLDMQQSNLGSCLAAN 222
            MLPTLS I+QT KRSKWPPDHQDIVNSAKHIGLAKFCELLISDW GRLQ YLWKPGAY   LIILGECSAR+RTS  NKELEADQNALLLDHVKVWKPPD QKLQYHFRDCQ KSGDGDF R NGEVITG GG LMFSSQIKEKPPD LSLHQ+ NK TRGNYLDSKKRMKPDLLSIGTGQTV+S RI EKRGYS DQSIK GSLAKL+MQ SNLGSCLAAN
Sbjct:  489 MLPTLSWIEQTRKRSKWPPDHQDIVNSAKHIGLAKFCELLISDWGGRLQFYLWKPGAYSRILIILGECSARSRTSWDNKELEADQNALLLDHVKVWKPPDLQKLQYHFRDCQTKSGDGDFTRLNGEVITGIGGELMFSSQIKEKPPDELSLHQSPNKPTRGNYLDSKKRMKPDLLSIGTGQTVMSTRIFEKRGYSIDQSIKKGSLAKLEMQLSNLGSCLAAN 710          
BLAST of BraAnng002260.3.5C.1 vs. GenBank_protein
Match: KAG5373915.1 (hypothetical protein IGI04_042762 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 381 bits (979), Expect = 1.540e-125
Identity = 187/222 (84.23%), Postives = 199/222 (89.64%), Query Frame = 0
Query:    1 MLPTLSRIQQTGKRSKWPPDHQDIVNSAKHIGLAKFCELLISDWAGRLQIYLWKPGAYDSTLIILGECSARARTSLGNKELEADQNALLLDHVKVWKPPDFQKLQYHFRDCQIKSGDGDFIRENGEVITGAGGGLMFSSQIKEKPPDGLSLHQTSNKQTRGNYLDSKKRMKPDLLSIGTGQTVLSARISEKRGYSNDQSIKNGSLAKLDMQQSNLGSCLAAN 222
            MLPTLS IQQT KRSKWPPDHQDIVNSAKHIGLAKFCELLISDW GRLQ YLWKPG+Y   LIILGECSAR+RTS GNKELEADQN+LLL HVK+WKPPD Q+LQ+H++D Q  SGDG F  ENGEVITG GG  MFSSQIKEKPPDGLSLHQ+ NK TRGNYLDSKKRMKPDLLSIGTGQTVLSA + E+RGYSNDQSIKNGSLAKL+MQQSNLGSCLAAN
Sbjct:  263 MLPTLSWIQQTRKRSKWPPDHQDIVNSAKHIGLAKFCELLISDWGGRLQFYLWKPGSYSRILIILGECSARSRTSWGNKELEADQNSLLLGHVKIWKPPDMQQLQHHYKDYQTMSGDGGFTGENGEVITGIGGEFMFSSQIKEKPPDGLSLHQSPNKPTRGNYLDSKKRMKPDLLSIGTGQTVLSAILFERRGYSNDQSIKNGSLAKLEMQQSNLGSCLAAN 484          
BLAST of BraAnng002260.3.5C.1 vs. GenBank_protein
Match: XP_033139121.1 (uncharacterized protein LOC117130236 [Brassica rapa])

HSP 1 Score: 373 bits (957), Expect = 6.990e-121
Identity = 190/222 (85.59%), Postives = 192/222 (86.49%), Query Frame = 0
Query:    1 MLPTLSRIQQTGKRSKWPPDHQDIVNSAKHIGLAKFCELLISDWAGRLQIYLWKPGAYDSTLIILGECSARARTSLGNKELEADQNALLLDHVKVWKPPDFQKLQYHFRDCQIKSGDGDFIRENGEVITGAGGGLMFSSQIKEKPPDGLSLHQTSNKQTRGNYLDSKKRMKPDLLSIGTGQTVLSARISEKRGYSNDQSIKNGSLAKLDMQQSNLGSCLAAN 222
            MLPTLS IQQTGKRSKWPPDHQDIVNSAKHIGLAKFCELLISDWAGRLQIYLWKPGAYDSTLIILGECSARARTSLGNKELEADQNALLLDHVKVWKPPD QKLQYHFRDCQIKSGDGDFIR NGEVITG GG LMFSSQ KEKPPDGLSLHQ+ NK  RG                   QTVLSARI EKRGYSNDQSIKNG LAKL+MQQSNLGSCLAAN
Sbjct:  411 MLPTLSWIQQTGKRSKWPPDHQDIVNSAKHIGLAKFCELLISDWAGRLQIYLWKPGAYDSTLIILGECSARARTSLGNKELEADQNALLLDHVKVWKPPDLQKLQYHFRDCQIKSGDGDFIRVNGEVITGVGGKLMFSSQNKEKPPDGLSLHQSPNKSARG-------------------QTVLSARIFEKRGYSNDQSIKNGYLAKLEMQQSNLGSCLAAN 613          
The following BLAST results are available for this feature:
BLAST of BraAnng002260.3.5C.1 vs. GenBank_protein
Analysis Date: 2022-02-26 (Diamond on OGS3.5 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
CAF2224308.11.490e-14393.24unnamed protein product, partial [Brassica napus][more]
CAF2320592.12.710e-14292.34unnamed protein product, partial [Brassica napus][more]
KAG5374081.18.610e-13591.44hypothetical protein IGI04_042644 [Brassica rapa s... [more]
KAG5374067.11.630e-13290.54hypothetical protein IGI04_042630, partial [Brassi... [more]
KAG5373602.12.370e-13289.64hypothetical protein IGI04_043080, partial [Brassi... [more]
KAG5373808.13.180e-13289.19hypothetical protein IGI04_042863, partial [Brassi... [more]
KAG5373829.13.940e-13089.64hypothetical protein IGI04_042853, partial [Brassi... [more]
KAG5411328.11.920e-12787.39hypothetical protein IGI04_007647 [Brassica rapa s... [more]
KAG5373915.11.540e-12584.23hypothetical protein IGI04_042762 [Brassica rapa s... [more]
XP_033139121.16.990e-12185.59uncharacterized protein LOC117130236 [Brassica rap... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold0379contigScaffold0379:2599..3273 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS3.52022-02-26
Diamond on OGS3.5 vs NR2022-02-26
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BraAnng002260.3.5C.1BraAnng002260.3.5C.1Brassica rapa chifumRNAScaffold0379 1327..3454 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BraAnng002260.3.5C.1-P1 ID=BraAnng002260.3.5C.1-P1|Name=BraAnng002260.3.5C.1|organism=Brassica rapa chifu|type=polypeptide|length=225bp
MLPTLSRIQQTGKRSKWPPDHQDIVNSAKHIGLAKFCELLISDWAGRLQI
YLWKPGAYDSTLIILGECSARARTSLGNKELEADQNALLLDHVKVWKPPD
FQKLQYHFRDCQIKSGDGDFIRENGEVITGAGGGLMFSSQIKEKPPDGLS
LHQTSNKQTRGNYLDSKKRMKPDLLSIGTGQTVLSARISEKRGYSNDQSI
KNGSLAKLDMQQSNLGSCLAANLT.
back to top