BraAnng002240.3.5C.1-P1 (polypeptide) Brassica rapa chifu
You are viewing a polypeptide, more information available on the corresponding mRNA page
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Overview
Homology
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Match: KAG5397404.1 (hypothetical protein IGI04_019218 [Brassica rapa subsp. trilocularis]) HSP 1 Score: 173 bits (438), Expect = 7.740e-45 Identity = 148/360 (41.11%), Postives = 162/360 (45.00%), Query Frame = 0 Query: 1 MGCLVSPHRTFVGVPQHTQDIRGCL-------------CVSICFRXXXXXXXXXXXXHISARWSLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQ----------HTGHPWLFVDIR---------------------------------------------QHKHDVYGC----RVCSCVSVCVXXXXXXXXXXSWLSVQH--TQDVLWLS-VCVRVYXXXXXXXXXXPRQHNMTFVGVRQHHTGRSSCVRQHTPD-----VRGXXXXXXXXXKESVAVHQYTYQPVGPWTQHADPSRGLFGCLAP-WAVCSVHTGRPWV----------VRQHTQDVHVCQLAXXXXXXLSVCV 269
+GCL S HRT VGV QHTQD+ GCL CVS+C RXXXXXXXXXXX HISARWSLDSARWPFPWTV VI G FSTHR V VR HTGHPWL V + Q+ DV GC R CVSV WLS+ ++ VL LS + + V Q+ G HTGR Q VR + SVAVHQYTYQ VGPWTQHA PSRGLFG P WA+CS HTGR WV VRQHTQDV C LS+CV
Sbjct: 70 VGCLFSTHRTSVGVRQHTQDVCGCLNTXXXXXAVRVCPCVSVC-RXXXXXXXXXXXVHISARWSLDSARWPFPWTVRVILAHVGCQFSTHRMPVVVRNHTQDVRGCPSAHTGHPWLSVCVSVXXXXXXXXXXXXXSTHISTLVLGLSTLALPVDSSGDFGPRGLSVQYTQDVCGCPSAHRGRLCVSVSTHRTSVVVRVCLWLSISTHISKLVLGLSTLTLPVDCLGDFGPRGLSVQYTQDISGCPPAHTGRLCVSPQQDVHGCQCGVRVCPCVSVSTHRTSVAVHQYTYQHVGPWTQHAGPSRGLFGRFWPTWAICSEHTGRLWVSVSTQRTFVCVRQHTQDVRGCP-------WLSMCV 421
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Match: KAG5393539.1 (hypothetical protein IGI04_023502 [Brassica rapa subsp. trilocularis]) HSP 1 Score: 161 bits (408), Expect = 8.070e-41 Identity = 134/313 (42.81%), Postives = 138/313 (44.09%), Query Frame = 0 Query: 4 LVSPHRTFVGVPQHTQDIRGCLCVSICFRXXXXXXXXXXXXHISARWSLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQHTGHPWLFVDIRQHKHDVYGC--------------RVCSCVSVCVXXXXXXXXXXSWLSVQ----HTQDVLWLSV--------------------------------CVRVYXXXXXXXXXXPRQHNMTFVGVRQHHTGRSSCVRQHTPDVRGXXXXXXXXXKESVAVHQYTYQPVGPWTQHADPSRGLFGCLAP-WAVCSVHTGRPWV----------VRQHTQDVHVC 255
VS HRT V V R C CV IC R HISARWSLDSAR PFPWTVWVI G LFSTHRTSVGVRQ H DVYGC RVCSCVS+ XXXXXXXXXX HT WL V VRV R T VG+RQH C HT G + SVAVHQYTYQ GPWTQHA PS GLFG P WAVCSVHTG WV VRQHTQD+ C
Sbjct: 626 FVSTHRTSVAV-------RVCPCVYICVRQHTHDFRGCRSVHISARWSLDSARLPFPWTVWVILAHLGCLFSTHRTSVGVRQ--------------HTQDVYGCPLVSVSXXXXXXXVRVCSCVSISXXXXXXXXXXXXXXXXXXXPAHTGRP-WLCVFXXXXXXXXXXXXXXXILARWSLDSTHWPFPWTVRVILAHVACLFSTHR----TSVGIRQHTQDVRGCPSAHT----GRPWVSVSTYRMSVAVHQYTYQHAGPWTQHAGPSCGLFGLFWPTWAVCSVHTGCMWVSVSTHKTYVSVRQHTQDIRGC 908
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Match: KAG5373800.1 (hypothetical protein IGI04_042887 [Brassica rapa subsp. trilocularis]) HSP 1 Score: 147 bits (372), Expect = 4.450e-36 Identity = 112/280 (40.00%), Postives = 123/280 (43.93%), Query Frame = 0 Query: 17 HTQDIRGC--------------LCVSICFRXXXXXXXXXXXXHISARWSLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQHTGHPWLFVDIRQHKHDVYGCRVCSCVSVCVXXXXXXXXXXSWLSVQH--TQDVLWLS--------VCVRVYXXXXXXXXXXPRQHNMTFVGVRQHHTGRSSCVRQHTPDVRGXXXXXXXXXKESVAVHQYTYQPVGPWTQHADPSRGLFGCLAPWAVCSVHTGRPWV-VRQHTQDV--HVCQLAXXXXXXLSVCV 269
+TQD+RGC S+C R ISA WSLDSARWPFPWTVWVI G LFST RTSVGVRQ H H+V GC CVSVCV WLS+ T VL LS + V Q+ G HTGRS CV T + SVAVHQYTYQ V PWTQHA P ++ LA WAVCSV TGRP V H+ V H C LA L V V
Sbjct: 481 YTQDVRGCPQAHTGRPWVXXXXXXXSVCVRQHTQVVRGCPSVDISACWSLDSARWPFPWTVWVILAHVGCLFSTQRTSVGVRQ--------------HTHEVCGCL---CVSVCVRLCPSAHTGCPWLSISTHITTLVLGLSKXXXXXXXXALPVECLGDFGPRGLSVQYTQDIRGCPSAHTGRS-CVLVSTHRASVAVRVCPSAHRTSVAVHQYTYQHVVPWTQHAGPFGTVWVILATWAVCSVLTGRPLVSASTHSTSVAVHGCPLAHIGRPWLFVWV 742
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Match: KAG5384685.1 (hypothetical protein IGI04_036155 [Brassica rapa subsp. trilocularis]) HSP 1 Score: 139 bits (350), Expect = 4.200e-33 Identity = 126/360 (35.00%), Postives = 143/360 (39.72%), Query Frame = 0 Query: 1 MGCLVSPHRTFVGVPQHTQDIRGC--------LCVSICFRXXXXXXXXXXXXHI-----------------------------------------SARWSLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQHTGHPW--LFVDIRQHKHDVYGCRVCSCV-------------SVCVXXXXXXXXXXSWLSVQHTQDV----------LWLSVCVRVYXXXXXXXXXX----------PR----QHNMTFVGVRQHHTGRS-SCVRQHTP--DVRGXXXXXXXXXKESVAVHQYTYQPVGPWTQHADPSRGLFGCLAPWAVCSVHTGRPWVVRQHTQDVHVCQLAXXXXXXLSVCV 269
+GCL HRT VG QHT DIRGC L +S+C R XX SARWSLDSARWPFPWTVWVIF G LFST RTSVGVRQ HT + L++ + +H+ V RVC CV +V + LSVQ+ QDV L +SV + PR Q+ G HTG V +H VR K SVA+HQY YQ GPWTQH PSRGLFG VRQHTQDV VC A LSVCV
Sbjct: 400 VGCLFRTHRTSVGARQHTHDIRGCPWLAHTGRLWLSVCIRVCPCVSVSTDXXXXXXXXXXXXXXXXPSAHTGYLWXXXXVCQXXXXXXXXXXXXXSARWSLDSARWPFPWTVWVIFAHVGCLFSTPRTSVGVRQ-HTQNVCGCLWLSVSKHRTSV-AVRVCPCVXXXXXXXXXAVHHAVALPVDCSGNFGPRGLSVQYPQDVHVCLSAHTGRLCVSVSTHISTLVVGLSMLTLPVDCLGDFGPRGLSVQYTQDVCGCPPAHTGSPWLSVSKHRTFVAVRVCPCVSVSTHKTSVALHQYIYQHAGPWTQHGGPSRGLFGTSVG-------------VRQHTQDVRVCPSAHTGRSWLSVCV 744
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Match: KAG5373969.1 (hypothetical protein IGI04_042716 [Brassica rapa subsp. trilocularis]) HSP 1 Score: 139 bits (349), Expect = 5.840e-33 Identity = 153/396 (38.64%), Postives = 165/396 (41.67%), Query Frame = 0 Query: 1 MGCLVSPHRTFVGVPQHTQDIRGCL-----------------CVSICFRXXXXXXXXXXXXHISARWSLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQ----------HTGHPWLFVDIRQHKHD----------------VYGCRVCSCVSVCVXXXXXXXXXXSW--------------------------LSVQHTQDVLW-------------------LSVCV-RVYXXXXXXXXXXPRQHNMTFVGVRQHHTGRSSCV-----------------------------------------RQHTPDVRGXXXXXXXXXKESVAVHQYTYQPVGPWTQHADPSRGLFGCLAP-WAVCSVHTGRPWV----------VRQHTQDVHVC 255
MGCL S HR+ VGV QHTQ +RGCL CV +C XXXXXXXXX HISARWSLDSARWPF WTVWVI G L STHRTSVGVRQ H G PWL V + V G + C XXXXXXXXXX L VQ+TQD+ ++VCV XXXXXXXXXX Q+ VG H S + T DVR + SV VHQYTYQ V PWTQHA PS GLFG P WAVCSVH GR WV VRQHTQD C
Sbjct: 1805 MGCLFSTHRSSVGVRQHTQVVRGCLWLSVSTHRTSVAVRLCSCVFVCVXXXXXXXXXXTSVHISARWSLDSARWPFLWTVWVILAHVGCLLSTHRTSVGVRQHTQDIRVCPSAHRGRPWLSVCVXXXXXXXXXXXXXXXSTHISMLVLGLSTLTLPVDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFGPRGLYVQYTQDICGCPSAHTGRTCVSVSTHRTPVAVCVCPXXXXXXXXXXXXVHQYTYQHVGPWTQHADPSRGLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTQDVRVCPCVSVSSHRTSVVVHQYTYQQVCPWTQHAGPSPGLFGLFWPTWAVCSVHIGRLWVSISKHRTSVCVRQHTQDGRPC 2200
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Match: KAG5384944.1 (hypothetical protein IGI04_036414 [Brassica rapa subsp. trilocularis]) HSP 1 Score: 138 bits (347), Expect = 9.890e-33 Identity = 116/302 (38.41%), Postives = 128/302 (42.38%), Query Frame = 0 Query: 14 VPQHTQDIRGCLCVSICFRXXXXXXXXXXXXHISARWSLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQ----------HTGHPWLFVDI---RQHKHDVYGCRVCSCVSVCVXXXXXXXXXXSW--------LSVQHTQDV----------LWLSVCVRVYXXXXXXXXXXPRQHNMTFVGVRQHHTGR-------------------SSCVRQHTPD------------VRGXXXXXXXXXKESVAVHQYTYQPVGPWTQHADPSRGLF--------GCLAPWAV-CSVHTGRPWV 244
V QHTQD+RGC V HISARWSLDSARWPFPWTVWVI G LFSTHRTSVGVRQ HTG PWL V + + + +S V LSVQ+T DV LW VCVRV RQ T V V H+T + S VRQ T VR + SVAVHQYTYQ VGPWTQHADPSRGLF GC + + S HTGR W+
Sbjct: 272 VCQHTQDVRGCPSV-----------------HISARWSLDSARWPFPWTVWVILAHVGCLFSTHRTSVGVRQHTQDVRGCPSAHTGRPWLSVCVCVXXXXXXXXXXXXISTHISTLVLGLSTLTRPVDCSGDFGPRGLSVQYTHDVCGCPPAHTGRLWPFVCVRV-----CLSVSISRQR--TSVAVH-HYTDQHXXXXXXXXXXXXXXXXXLSVAVRQQTXXXXXXLTNTTSVAVRLCPCVSVSTHRTSVAVHQYTYQHVGPWTQHADPSRGLFVQYTQDVRGCPSAYTGRLSAHTGRLWL 548
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Match: KAG5373877.1 (hypothetical protein IGI04_042803 [Brassica rapa subsp. trilocularis]) HSP 1 Score: 136 bits (342), Expect = 4.240e-32 Identity = 125/278 (44.96%), Postives = 135/278 (48.56%), Query Frame = 0 Query: 1 MGCLVSPHRTFVGVPQHTQDIRGCLCVSICFRXXXXXXXXXXXXHISARWSLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQHTGHPWLFVDIRQHKHDVYGCRVCSCVSVC-----VXXXXXXXXXXSWLSVQHTQDVLWLSVCVRVYXXXXXXXXXXPRQHNMTFVGVRQHHTGRSSCVRQHTPDVRGXXXXXXXXXKESV----AVHQYTYQPVGPWTQHADPSRGLFGCLAPWAVCSVHTGRPWVVRQHTQDVHVCQLAXXXXXXLSVCV 269
+GCL S RT VGV QHTQD+RGC CVS+ XXXXXXXXXXX HISAR SLDSA WPFPWT+WVI G LFSTHRTSVGVRQ HT H +FV RQH + V R C CVSV V XXXXX XX Y Q+ G HTGRS XX VHQYTYQ WTQHA SRGLF V QH+QD+H C +SVCV
Sbjct: 558 VGCLFSTQRTSVGVRQHTQDVRGCSCVSVFXXXXXXXXXXXXXVHISARCSLDSAHWPFPWTLWVILVHVGCLFSTHRTSVGVRQ-HT-HDVVFV--RQHINAV---RSCPCVSVSTHRTSVCXXXXXQVXXXXXXXXXXXXXXXXXXXXXTYQHGDFGPCGLSVQYAQDVRGCPSAHTGRSXXXXXXXXXXXXVRVCPVCXXXXXXXXXXTVHQYTYQHASRWTQHAGHSRGLFRTSV-------------AVHQHSQDIHGCPC-------VSVCV 808
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Match: KAG5384476.1 (hypothetical protein IGI04_035946 [Brassica rapa subsp. trilocularis]) HSP 1 Score: 135 bits (339), Expect = 1.260e-31 Identity = 126/278 (45.32%), Postives = 128/278 (46.04%), Query Frame = 0 Query: 3 CLVSPHRTFVGVPQHTQD-IRGCLCVSICFRXXXXXXXXXXXXHISARWSLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQHTGHPWLFVDIRQHKHDVYGCRVCSCVSVCVXXXXXXXXXXSWLSVQHTQDVLWLSVCVRVYXXXXXXXXXXPRQHNMTFVGVRQHHTGRSSCVRQHTPDVRGXXXXXXXXXKESVAVHQYTYQPVGPWTQHADPSRGLFGCLA-PWAV--------CSVHTGRPWV-VRQHTQDVHVCQLAXXXXXXLSVCV 269
CL S H T VGV QHTQD +RGC V HISARWS DSARWPFPWTVWVI G LFSTHRTSVGVRQ H DV GC HT WLS CV V XXXXXXXXXX XXXXXXXXX VHQYTYQ VGPWTQHADPS GLFG L PW C T R V V QHTQ+V C A LSVCV
Sbjct: 1721 CLFSTHGTSVGVRQHTQDDVRGCPSV-----------------HISARWSFDSARWPFPWTVWVILAHVGYLFSTHRTSVGVRQ--------------HTEDVSGC-----------------------PSAHTGRQ-WLSWCVYVXXXXXXXXXXXXXXXXXXXXXXXX------------------XXXXXXXXXXXXXXVHQYTYQHVGPWTQHADPSLGLFGTLTFPWTARVILAHVGCLFSTHRTSVGVSQHTQNVCGCPSAHTGRQWLSVCV 1925
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Match: KAG5384913.1 (hypothetical protein IGI04_036383 [Brassica rapa subsp. trilocularis]) HSP 1 Score: 132 bits (333), Expect = 3.090e-31 Identity = 117/251 (46.61%), Postives = 130/251 (51.79%), Query Frame = 0 Query: 1 MGCLVSPHRTFVGVPQHTQDIRGCLCVSICFRXXXXXXXXXXXXHISARWSLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQHTGHPWLFVDIRQHKHDVYGCRVCSCVSV-----------------CVXXXXXXXXXXSWLSVQHTQDVLWLSVCVRVYXXXXXXXXXXPR----QHNMTFVGVRQHHTGR---SSCVRQHTPDVRGXXXXXXXXXKESVAVHQYTYQPVGPWTQHADPSRGLFG 227
+GCL S HRT VGV QHTQ + GC CV +C XXXXXXXXXXXX ISAR SL SARWPFPWTVWVIFGPRGL SV Q G PWL V H+ V RVC CVS+ XXXX WLS+ L L + + + PR Q+ G HTG S + + VR XXXXX VHQYTY VGPWTQHA+PSRGLFG
Sbjct: 348 VGCLFSTHRTSVGVRQHTQVVCGCPCVFVCXXXXXXXXXXXXXXXISARGSLASARWPFPWTVWVIFGPRGL-------SVQYTQDVCGCPWLSVST--HRMSV-AVRVCPCVSINTPGRXXXXXXXXXXXXXXXXXXSAHTGRMWLSISKHISTLVLGLSM-LALPVGCLGDFGPRGLSVQYTQEVCGCLSTHTGHPWVSVSTHRTSVAVRVCLCVXXXXXXXXXXVHQYTYHHVGPWTQHANPSRGLFG 587
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Match: KAG5384569.1 (hypothetical protein IGI04_036039 [Brassica rapa subsp. trilocularis]) HSP 1 Score: 131 bits (330), Expect = 1.630e-30 Identity = 126/247 (51.01%), Postives = 132/247 (53.44%), Query Frame = 0 Query: 16 QHTQDIRGCLCVSICFRXXXXXXXXXXXXHISARWSLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQHTGHPWLFVDIRQHKHDVYGCRVCSC----VSVCVXXXXXXXXXXSWLSV----------QHTQDVLWLSVCVRVYXXXXXXXXXX--------------PR----QHNMTFVGVRQHHTGR---SSCVRQHTPDVRGXXXXXXXXXKESVAVHQYTYQPVGPWTQHADPSRGLFG 227
Q+TQD+RGC CVS+C R XXXXXXXXXXX SARWSLDSAR PFPWTVWVI G LFSTHRTSVGVRQ H DV GC S SVCV X W+SV QHTQDV + CV V XXXXXXXXXX PR Q HTGR S CVR P V + SVAV QYTYQ VGPWTQHA PSRGLFG
Sbjct: 657 QYTQDVRGCPCVSVCVRQXXXXXXXXXXXXXSARWSLDSARRPFPWTVWVILSHVGCLFSTHRTSVGVRQ--------------HTQDVCGCFWLSVSTHGTSVCVRX---------WVSVXXXXXXXXXXQHTQDVRGCA-CVSVXXXXXXXXXXXXXXXXXXXXSGNFGPRGLSVQXXXXXXXXXXXHTGRPWLSVCVRL-CPYVS------VSTHRTSVAVPQYTYQHVGPWTQHAGPSRGLFG 872 The following BLAST results are available for this feature:
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Analysis Date: 2022-02-26 (Diamond on OGS3.5 vs NR) Total hits: 20 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >BraAnng002240.3.5C.1-P1 ID=BraAnng002240.3.5C.1-P1|Name=BraAnng002240.3.5C.1|organism=Brassica rapa chifu|type=polypeptide|length=269bpback to top |