BolC1t00275H-R (mRNA) Brassica oleracea HDEM

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBolC1t00275H-R
Unique NameBolC1t00275H-R
TypemRNA
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C1contigC1:1524565..1525545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica oleracea HDEM OGS1.02018-11-02
Properties
Property NameValue
Stop1
Start1
Cds size465
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC1t00275HBolC1t00275HBrassica oleracea HDEMgeneC1 1524565..1525545 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00275H-RBolC1t00275H-R-PBrassica oleracea HDEMpolypeptideC1 1524565..1525545 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00275H_exon1BolC1t00275H_exon1Brassica oleracea HDEMexonC1 1524565..1524696 +
BolC1t00275H_exon2BolC1t00275H_exon2Brassica oleracea HDEMexonC1 1524776..1525044 +
BolC1t00275H_exon3BolC1t00275H_exon3Brassica oleracea HDEMexonC1 1525482..1525545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00275HBolC1t00275HBrassica oleracea HDEMCDSC1 1524565..1524696 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BolC1t00275H-R ID=BolC1t00275H-R|Name=BolC1t00275H-R|organism=Brassica oleracea HDEM|type=mRNA|length=465bp|location=Sequence derived from alignment at C1:1524565..1525545+ (Brassica oleracea HDEM)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCTTCCACATGTACAAACTAACAGGGCCTATCCTTTGGATTCTTT
GCCGCAAGAATTTGATCCATGCCACCTAGTTGAACTCAATTTGTCTTACA
GTCATCTTCAGAAACTTTGGGGAGGAACCAAGAACCTCGACATGTTGAAG
ACGTGTAAGCTTTGTCATTCCCAGCAGCTGACTGAGGTTGACGATCTTTG
TAAAGCTCAAAATATCGAGCTAATTGATCTCCAAGGCTGTACAAAACTGC
AGAGATTTCCAGCCACCGGTCAACTACGTCATCTCCGAGTTGTAAATCTT
TCAGGCTGCACAGAGATCAGAAGTATCCCAGAGGTTTCACCTAACATTGT
GGAGCTTCATCTCCAGGGAACTGGCACAAGAGAATTACCAATATCTCTTG
TTAATAACAAACTCGGCAACCTTCTTGCAAAGTTCAAAGGTAAACTAATG
AGTACACCCCCATAG
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protein sequence of BolC1t00275H-R

>BolC1t00275H-R-P ID=BolC1t00275H-R-P|Name=BolC1t00275H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=155bp
MHLPHVQTNRAYPLDSLPQEFDPCHLVELNLSYSHLQKLWGGTKNLDMLK
TCKLCHSQQLTEVDDLCKAQNIELIDLQGCTKLQRFPATGQLRHLRVVNL
SGCTEIRSIPEVSPNIVELHLQGTGTRELPISLVNNKLGNLLAKFKGKLM
STPP.
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mRNA from alignment at C1:1524565..1525545+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BolC1t00275H-R ID=BolC1t00275H-R|Name=BolC1t00275H-R|organism=Brassica oleracea HDEM|type=mRNA|length=981bp|location=Sequence derived from alignment at C1:1524565..1525545+ (Brassica oleracea HDEM)
ATGCATCTTCCACATGTACAAACTAACAGGGCCTATCCTTTGGATTCTTT
GCCGCAAGAATTTGATCCATGCCACCTAGTTGAACTCAATTTGTCTTACA
GTCATCTTCAGAAACTTTGGGGAGGAACCAAGGTAGGTAAACTCGTATCT
CTTATTTTATACATTCTTCCAAGTTTGTACTAATCCATTTCCAACTTAAT
TTTCTGCTCAGAACCTCGACATGTTGAAGACGTGTAAGCTTTGTCATTCC
CAGCAGCTGACTGAGGTTGACGATCTTTGTAAAGCTCAAAATATCGAGCT
AATTGATCTCCAAGGCTGTACAAAACTGCAGAGATTTCCAGCCACCGGTC
AACTACGTCATCTCCGAGTTGTAAATCTTTCAGGCTGCACAGAGATCAGA
AGTATCCCAGAGGTTTCACCTAACATTGTGGAGCTTCATCTCCAGGGAAC
TGGCACAAGAGAATTACCAATATCTCTTGTGTCCCCTTCCCAAGAAGATA
ACCTGAACCTTGATAAATTAACAAGCCTGGCTCAAGTCATCAAATCAGCA
TCTTGACAAACTTGTTTTGCTGAATATGAAAGACTGTGTTCATTTGCAAA
GCTTGCCTCACATGTTTCATTTAGAATCTCTCGAAGTTCTTGATCTGTCT
GGATGCTCGGAGCTCAAGAGTATACAAGGATTCCCACGGAACTTAAAAGA
GTTATATCTTGTTGGCGCTGCTGTCACAAAACTACCACCGCTTCCCTGGG
GTATACAAGTCTTGAATGCACATGGTTGTATGTCTCTTGTATCAGTTCCT
TTTGGTTTCGAGAGACTTCCTAGGTATCACAATGCGGCATAGCTTACTTC
AGAAAATAAGTAGGGAGATCGTCCATAGACAACCCACGTTGGACAAAGAG
TTAGTAAAAGATGACAGTAATAACAAACTCGGCAACCTTCTTGCAAAGTT
CAAAGGTAAACTAATGAGTACACCCCCATAG
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Coding sequence (CDS) from alignment at C1:1524565..1525545+

>BolC1t00275H-R ID=BolC1t00275H-R|Name=BolC1t00275H-R|organism=Brassica oleracea HDEM|type=CDS|length=465bp|location=Sequence derived from alignment at C1:1524565..1525545+ (Brassica oleracea HDEM)
ATGCATCTTCCACATGTACAAACTAACAGGGCCTATCCTTTGGATTCTTT
GCCGCAAGAATTTGATCCATGCCACCTAGTTGAACTCAATTTGTCTTACA
GTCATCTTCAGAAACTTTGGGGAGGAACCAAGAACCTCGACATGTTGAAG
ACGTGTAAGCTTTGTCATTCCCAGCAGCTGACTGAGGTTGACGATCTTTG
TAAAGCTCAAAATATCGAGCTAATTGATCTCCAAGGCTGTACAAAACTGC
AGAGATTTCCAGCCACCGGTCAACTACGTCATCTCCGAGTTGTAAATCTT
TCAGGCTGCACAGAGATCAGAAGTATCCCAGAGGTTTCACCTAACATTGT
GGAGCTTCATCTCCAGGGAACTGGCACAAGAGAATTACCAATATCTCTTG
TTAATAACAAACTCGGCAACCTTCTTGCAAAGTTCAAAGGTAAACTAATG
AGTACACCCCCATAG
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