BolC1t00154H-R (mRNA) Brassica oleracea HDEM

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBolC1t00154H-R
Unique NameBolC1t00154H-R
TypemRNA
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C1contigC1:813348..814139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica oleracea HDEM OGS1.02018-11-02
Properties
Property NameValue
Stop1
Start1
Cds size672
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC1t00154HBolC1t00154HBrassica oleracea HDEMgeneC1 813348..814139 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00154H-RBolC1t00154H-R-PBrassica oleracea HDEMpolypeptideC1 813348..814139 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00154H_exon1BolC1t00154H_exon1Brassica oleracea HDEMexonC1 813348..813531 +
BolC1t00154H_exon2BolC1t00154H_exon2Brassica oleracea HDEMexonC1 813652..814139 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00154HBolC1t00154HBrassica oleracea HDEMCDSC1 813348..813531 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BolC1t00154H-R ID=BolC1t00154H-R|Name=BolC1t00154H-R|organism=Brassica oleracea HDEM|type=mRNA|length=672bp|location=Sequence derived from alignment at C1:813348..814139+ (Brassica oleracea HDEM)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTGCAATGGATGTAGAGTTCTTCGAAAAGGTTGCAGCGAAACATG
CATCCTTCGTCCTTGCCTTCAATGGATCGAATCCGCCGAGTCACAAGGCC
ACGCTACCGTCTTCGTGGCTAAATTCTTTGGCCGTGCCGGTCTAATGTCA
TTCATCTCCGCCGTACCCGAACCAAACCGCCCTGCTTTGTTTCAGTCGTT
GTTGTTTGAAGCGTGTGGGAGGACGGTGAATCCGGTTAACGGAGCGGTTG
GTATGTTATGGACCGGGAACTGGCACGTGTGCCAAGCGGCGGTTGAAACT
GTTCTTCGCGGCGGAACTTTACGACCTATCTCAGATCTACACGAATCTCC
TTCGTTGAACTCCTCAGATGAGTCTACCGAGATCTGGCGGATGCAGCGTC
CAGAGGGTTCCAGGAAAGAATCTTTGGTCAACCGTAAACGATCTAAGACC
GAGCGGTCTGATCCGGAACTGAACCACGGGTTAGCTCTAACCGGTCCGGT
TGTCCCGGCTCCTTTTCTTCCACCGCCGCCGTTTAGCAAGGCGGTTAATG
GGGATCATCCGGGAAGTCCATCAGAGGAGTCTGTAACGACGACGTCGTGT
TATGAATATGGAATCAGCGGCGATGGATACGGAAACAAAAGAGAGAGAAA
GTTATTAAACCTTTTTGTTTAA
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protein sequence of BolC1t00154H-R

>BolC1t00154H-R-P ID=BolC1t00154H-R-P|Name=BolC1t00154H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=224bp
MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMS
FISAVPEPNRPALFQSLLFEACGRTVNPVNGAVGMLWTGNWHVCQAAVET
VLRGGTLRPISDLHESPSLNSSDESTEIWRMQRPEGSRKESLVNRKRSKT
ERSDPELNHGLALTGPVVPAPFLPPPPFSKAVNGDHPGSPSEESVTTTSC
YEYGISGDGYGNKRERKLLNLFV.
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mRNA from alignment at C1:813348..814139+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BolC1t00154H-R ID=BolC1t00154H-R|Name=BolC1t00154H-R|organism=Brassica oleracea HDEM|type=mRNA|length=792bp|location=Sequence derived from alignment at C1:813348..814139+ (Brassica oleracea HDEM)
ATGAGTTGCAATGGATGTAGAGTTCTTCGAAAAGGTTGCAGCGAAACATG
CATCCTTCGTCCTTGCCTTCAATGGATCGAATCCGCCGAGTCACAAGGCC
ACGCTACCGTCTTCGTGGCTAAATTCTTTGGCCGTGCCGGTCTAATGTCA
TTCATCTCCGCCGTACCCGAACCAAACCGCCCTGGTACGAGAGTCTTTCT
ATATTTCAGAATATAACACGCAACATCATTAATACAAGACTATTAGGTTA
CAAGATTTGATTCCTTTTGTAATAACTTGAGATTTATTTGTTTGTTTTGT
TCAGCTTTGTTTCAGTCGTTGTTGTTTGAAGCGTGTGGGAGGACGGTGAA
TCCGGTTAACGGAGCGGTTGGTATGTTATGGACCGGGAACTGGCACGTGT
GCCAAGCGGCGGTTGAAACTGTTCTTCGCGGCGGAACTTTACGACCTATC
TCAGATCTACACGAATCTCCTTCGTTGAACTCCTCAGATGAGTCTACCGA
GATCTGGCGGATGCAGCGTCCAGAGGGTTCCAGGAAAGAATCTTTGGTCA
ACCGTAAACGATCTAAGACCGAGCGGTCTGATCCGGAACTGAACCACGGG
TTAGCTCTAACCGGTCCGGTTGTCCCGGCTCCTTTTCTTCCACCGCCGCC
GTTTAGCAAGGCGGTTAATGGGGATCATCCGGGAAGTCCATCAGAGGAGT
CTGTAACGACGACGTCGTGTTATGAATATGGAATCAGCGGCGATGGATAC
GGAAACAAAAGAGAGAGAAAGTTATTAAACCTTTTTGTTTAA
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Coding sequence (CDS) from alignment at C1:813348..814139+

>BolC1t00154H-R ID=BolC1t00154H-R|Name=BolC1t00154H-R|organism=Brassica oleracea HDEM|type=CDS|length=672bp|location=Sequence derived from alignment at C1:813348..814139+ (Brassica oleracea HDEM)
ATGAGTTGCAATGGATGTAGAGTTCTTCGAAAAGGTTGCAGCGAAACATG
CATCCTTCGTCCTTGCCTTCAATGGATCGAATCCGCCGAGTCACAAGGCC
ACGCTACCGTCTTCGTGGCTAAATTCTTTGGCCGTGCCGGTCTAATGTCA
TTCATCTCCGCCGTACCCGAACCAAACCGCCCTGCTTTGTTTCAGTCGTT
GTTGTTTGAAGCGTGTGGGAGGACGGTGAATCCGGTTAACGGAGCGGTTG
GTATGTTATGGACCGGGAACTGGCACGTGTGCCAAGCGGCGGTTGAAACT
GTTCTTCGCGGCGGAACTTTACGACCTATCTCAGATCTACACGAATCTCC
TTCGTTGAACTCCTCAGATGAGTCTACCGAGATCTGGCGGATGCAGCGTC
CAGAGGGTTCCAGGAAAGAATCTTTGGTCAACCGTAAACGATCTAAGACC
GAGCGGTCTGATCCGGAACTGAACCACGGGTTAGCTCTAACCGGTCCGGT
TGTCCCGGCTCCTTTTCTTCCACCGCCGCCGTTTAGCAAGGCGGTTAATG
GGGATCATCCGGGAAGTCCATCAGAGGAGTCTGTAACGACGACGTCGTGT
TATGAATATGGAATCAGCGGCGATGGATACGGAAACAAAAGAGAGAGAAA
GTTATTAAACCTTTTTGTTTAA
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