BolC1t00074H-R (mRNA) Brassica oleracea HDEM

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBolC1t00074H-R
Unique NameBolC1t00074H-R
TypemRNA
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C1contigC1:359523..360048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica oleracea HDEM OGS1.02018-11-02
Properties
Property NameValue
Stop1
Start1
Cds size336
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC1t00074HBolC1t00074HBrassica oleracea HDEMgeneC1 359523..360048 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00074H-RBolC1t00074H-R-PBrassica oleracea HDEMpolypeptideC1 359523..360048 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00074H_exon1BolC1t00074H_exon1Brassica oleracea HDEMexonC1 359523..359585 +
BolC1t00074H_exon2BolC1t00074H_exon2Brassica oleracea HDEMexonC1 359707..359889 +
BolC1t00074H_exon3BolC1t00074H_exon3Brassica oleracea HDEMexonC1 359959..360048 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00074HBolC1t00074HBrassica oleracea HDEMCDSC1 359523..359585 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BolC1t00074H-R ID=BolC1t00074H-R|Name=BolC1t00074H-R|organism=Brassica oleracea HDEM|type=mRNA|length=336bp|location=Sequence derived from alignment at C1:359523..360048+ (Brassica oleracea HDEM)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATTCTATGCGCGCTCTGAAGAGGCTCGCCAAAGTCATTCAGTTCA
CAAGCTTGCATTGGGTGGTGCACTTGCGCTGGAAGATACACTCTCCAAAG
GTTTGCCAATCCAAAAAGAGATAGATATGCTTCAGACTTATCTTGAAGGA
ATTCATCAGGACTCGATGTTAGACTTGGTATTATCATCTCTTCCAGAAGA
AGCACGATCCAGTGGAACAGATACAGTACAGCAGCTGAACCAGACGTTTA
ATACCTTGAAAGGAGCACTTAGACACTTCAGTCTCATTCCACCTGGTGGC
GGAGGAATCTTAGCACATTCACTAGCAGATATATAG
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protein sequence of BolC1t00074H-R

>BolC1t00074H-R-P ID=BolC1t00074H-R-P|Name=BolC1t00074H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=112bp
MAFYARSEEARQSHSVHKLALGGALALEDTLSKGLPIQKEIDMLQTYLEG
IHQDSMLDLVLSSLPEEARSSGTDTVQQLNQTFNTLKGALRHFSLIPPGG
GGILAHSLADI.
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mRNA from alignment at C1:359523..360048+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BolC1t00074H-R ID=BolC1t00074H-R|Name=BolC1t00074H-R|organism=Brassica oleracea HDEM|type=mRNA|length=526bp|location=Sequence derived from alignment at C1:359523..360048+ (Brassica oleracea HDEM)
ATGGCATTCTATGCGCGCTCTGAAGAGGCTCGCCAAAGTCATTCAGTTCA
CAAGCTTGCATTGGTAAGAACTAAGAAACGAATGGTCTGATTTTGTTGTG
GGTTCATCATGTTGGTAATGTCATGCAACTCTGCTTTTCTGTTGATATAT
ATATGATTCAAAAGGAAGTTAGGGGTTATTGTAGGGTGGTGCACTTGCGC
TGGAAGATACACTCTCCAAAGGTTTGCCAATCCAAAAAGAGATAGATATG
CTTCAGACTTATCTTGAAGGAATTCATCAGGACTCGATGTTAGACTTGGT
ATTATCATCTCTTCCAGAAGAAGCACGATCCAGTGGAACAGATACAGTAC
AGCAGCTGAACCAGACGGTGAGCTTATTTCACAGATGTCAAAAGAGTTTA
GAGAGTTGAACTAATCTCGTATTCTTGTATCTTCAGTTTAATACCTTGAA
AGGAGCACTTAGACACTTCAGTCTCATTCCACCTGGTGGCGGAGGAATCT
TAGCACATTCACTAGCAGATATATAG
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Coding sequence (CDS) from alignment at C1:359523..360048+

>BolC1t00074H-R ID=BolC1t00074H-R|Name=BolC1t00074H-R|organism=Brassica oleracea HDEM|type=CDS|length=336bp|location=Sequence derived from alignment at C1:359523..360048+ (Brassica oleracea HDEM)
ATGGCATTCTATGCGCGCTCTGAAGAGGCTCGCCAAAGTCATTCAGTTCA
CAAGCTTGCATTGGGTGGTGCACTTGCGCTGGAAGATACACTCTCCAAAG
GTTTGCCAATCCAAAAAGAGATAGATATGCTTCAGACTTATCTTGAAGGA
ATTCATCAGGACTCGATGTTAGACTTGGTATTATCATCTCTTCCAGAAGA
AGCACGATCCAGTGGAACAGATACAGTACAGCAGCTGAACCAGACGTTTA
ATACCTTGAAAGGAGCACTTAGACACTTCAGTCTCATTCCACCTGGTGGC
GGAGGAATCTTAGCACATTCACTAGCAGATATATAG
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