BolSC94t61271H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolSC94t61271H-R
Unique NameBolSC94t61271H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length253
Homology
[Close]
BLAST of BolSC94t61271H-R vs. GenBank_protein
Match: VDD66043.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 509 bits (1312), Expect = 3.340e-182
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0 
Query:    1 MDVSHGSPGRADVPSVAAVLQHSYFSCPLYRAAVRTQSPKLEMIDSLFQPVDDPVNGDNANCLLEFFKTSNARKPKQIIIFRDGVSESQFNQVLNIEVDQIIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVHPTNYDFYMCAHAGIIGTSRPAHYHVLLDEIGFSPDELQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQFAQFTKFEDISEEKVPELPRLHERVESNMFFC 252
            MDVSHGSPGRADVPSVAAVLQHSYFSCPLYRAAVRTQSPKLEMIDSLFQPVDDPVNGDNANCLLEFFKTSNARKPKQIIIFRDGVSESQFNQVLNIEVDQIIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVHPTNYDFYMCAHAGIIGTSRPAHYHVLLDEIGFSPDELQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQFAQFTKFEDISEEKVPELPRLHERVESNMFFC
Sbjct:    1 MDVSHGSPGRADVPSVAAVLQHSYFSCPLYRAAVRTQSPKLEMIDSLFQPVDDPVNGDNANCLLEFFKTSNARKPKQIIIFRDGVSESQFNQVLNIEVDQIIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVHPTNYDFYMCAHAGIIGTSRPAHYHVLLDEIGFSPDELQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQFAQFTKFEDISEEKVPELPRLHERVESNMFFC 252
[Close]
BLAST of BolSC94t61271H-R vs. GenBank_protein
Match: KAG2332768.1 (hypothetical protein Bca52824_003948 [Brassica carinata])

HSP 1 Score: 455 bits (1170), Expect = 1.250e-155
Identity = 233/258 (90.31%), Postives = 239/258 (92.64%), Query Frame = 0 
Query:    1 MDVSHGSPGRADVPSVAAVLQHSYFSCPL---YRAAVRTQSPKLEMIDSLFQPVDDPVNGDNA---NCLLEFFKTSNARKPKQIIIFRDGVSESQFNQVLNIEVDQIIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVHPTNYDFYMCAHAGIIGTSRPAHYHVLLDEIGFSPDELQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQFAQFTKFEDISEEKVPELPRLHERVESNMFFC 252
            MDVSHGSPGRADVPSVAAV+    +  PL   YRAAVR+QSPKLEMIDSLFQPVDDPVNGDN       +EFF TSN RKPKQIIIFRDGVSESQFNQVLNIEVDQIIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVHPTNYDFYMCAHAG IGTSRPAHYHVLLDEIGFSPDELQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQFAQFTKFED+SEEKVPELPRLHE+VESNMFFC
Sbjct:  327 MDVSHGSPGRADVPSVAAVVGSKNW--PLISRYRAAVRSQSPKLEMIDSLFQPVDDPVNGDNGIMNELFVEFFNTSNGRKPKQIIIFRDGVSESQFNQVLNIEVDQIIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVHPTNYDFYMCAHAGKIGTSRPAHYHVLLDEIGFSPDELQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQFAQFTKFEDVSEEKVPELPRLHEKVESNMFFC 582
[Close]
BLAST of BolSC94t61271H-R vs. GenBank_protein
Match: XP_013630625.1 (PREDICTED: protein argonaute 6 [Brassica oleracea var. oleracea])

HSP 1 Score: 462 bits (1190), Expect = 4.550e-155
Identity = 238/258 (92.25%), Postives = 242/258 (93.80%), Query Frame = 0 
Query:    1 MDVSHGSPGRADVPSVAAVLQHSYFSCPL---YRAAVRTQSPKLEMIDSLFQPVDDPVNGDNA---NCLLEFFKTSNARKPKQIIIFRDGVSESQFNQVLNIEVDQIIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVHPTNYDFYMCAHAGIIGTSRPAHYHVLLDEIGFSPDELQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQFAQFTKFEDISEEKVPELPRLHERVESNMFFC 252
            MDVSHGSPGRADVPSVAAV+    +  PL   YRAAVRTQSPKLEMIDSLFQPV+DPVNGDN       +EFFKTSNARKPKQIIIFRDGVSESQFNQVLNIEVDQIIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVHPTNYDFYMCAHAGIIGTSRPAHYHVLLDEIGFSPDELQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQFAQFTKFEDISEEKVPELPRLHERVESNMFFC
Sbjct:  606 MDVSHGSPGRADVPSVAAVVGSKNW--PLISRYRAAVRTQSPKLEMIDSLFQPVEDPVNGDNGIMNELFVEFFKTSNARKPKQIIIFRDGVSESQFNQVLNIEVDQIIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVHPTNYDFYMCAHAGIIGTSRPAHYHVLLDEIGFSPDELQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQFAQFTKFEDISEEKVPELPRLHERVESNMFFC 861
[Close]
BLAST of BolSC94t61271H-R vs. GenBank_protein
Match: CAF1699792.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 462 bits (1190), Expect = 5.350e-155
Identity = 238/258 (92.25%), Postives = 242/258 (93.80%), Query Frame = 0 
Query:    1 MDVSHGSPGRADVPSVAAVLQHSYFSCPL---YRAAVRTQSPKLEMIDSLFQPVDDPVNGDNA---NCLLEFFKTSNARKPKQIIIFRDGVSESQFNQVLNIEVDQIIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVHPTNYDFYMCAHAGIIGTSRPAHYHVLLDEIGFSPDELQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQFAQFTKFEDISEEKVPELPRLHERVESNMFFC 252
            MDVSHGSPGRADVPSVAAV+    +  PL   YRAAVRTQSPKLEMIDSLFQPV+DPVNGDN       +EFFKTSNARKPKQIIIFRDGVSESQFNQVLNIEVDQIIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVHPTNYDFYMCAHAGIIGTSRPAHYHVLLDEIGFSPDELQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQFAQFTKFEDISEEKVPELPRLHERVESNMFFC
Sbjct:  612 MDVSHGSPGRADVPSVAAVVGSKNW--PLISRYRAAVRTQSPKLEMIDSLFQPVEDPVNGDNGIMNELFVEFFKTSNARKPKQIIIFRDGVSESQFNQVLNIEVDQIIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVHPTNYDFYMCAHAGIIGTSRPAHYHVLLDEIGFSPDELQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQFAQFTKFEDISEEKVPELPRLHERVESNMFFC 867
[Close]
BLAST of BolSC94t61271H-R vs. GenBank_protein
Match: XP_018472619.1 (PREDICTED: protein argonaute 6 [Raphanus sativus])

HSP 1 Score: 462 bits (1189), Expect = 7.550e-155
Identity = 237/258 (91.86%), Postives = 242/258 (93.80%), Query Frame = 0 
Query:    1 MDVSHGSPGRADVPSVAAVLQHSYFSCPL---YRAAVRTQSPKLEMIDSLFQPVDDPVNGDNA---NCLLEFFKTSNARKPKQIIIFRDGVSESQFNQVLNIEVDQIIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVHPTNYDFYMCAHAGIIGTSRPAHYHVLLDEIGFSPDELQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQFAQFTKFEDISEEKVPELPRLHERVESNMFFC 252
            MDVSHGSPGRADVPSVAAV+    +  PL   YRAAVR+QSPKLEMIDSLFQPVDDPVNGDN       +EFFKTSNARKPKQIIIFRDGVSESQFNQVLNIEVDQIIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVHPTNYDFYMCAHAGIIGTSRPAHYHVLLDEIGFSPDELQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQFAQFTKFED+SEEKVPELPRLHERVESNMFFC
Sbjct:  612 MDVSHGSPGRADVPSVAAVVGSKNW--PLISRYRAAVRSQSPKLEMIDSLFQPVDDPVNGDNGIMNELFVEFFKTSNARKPKQIIIFRDGVSESQFNQVLNIEVDQIIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVHPTNYDFYMCAHAGIIGTSRPAHYHVLLDEIGFSPDELQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQFAQFTKFEDVSEEKVPELPRLHERVESNMFFC 867
[Close]
BLAST of BolSC94t61271H-R vs. GenBank_protein
Match: KAG2296674.1 (hypothetical protein Bca52824_043343 [Brassica carinata])

HSP 1 Score: 462 bits (1189), Expect = 9.370e-155
Identity = 237/258 (91.86%), Postives = 242/258 (93.80%), Query Frame = 0 
Query:    1 MDVSHGSPGRADVPSVAAVLQHSYFSCPL---YRAAVRTQSPKLEMIDSLFQPVDDPVNGDNA---NCLLEFFKTSNARKPKQIIIFRDGVSESQFNQVLNIEVDQIIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVHPTNYDFYMCAHAGIIGTSRPAHYHVLLDEIGFSPDELQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQFAQFTKFEDISEEKVPELPRLHERVESNMFFC 252
            MDVSHGSPGRADVPS+AAV+    +  PL   YRAAVRTQSPKLEMIDSLFQPV+DPVNGDN       +EFFKTSNARKPKQIIIFRDGVSESQFNQVLNIEVDQIIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVHPTNYDFYMCAHAGIIGTSRPAHYHVLLDEIGFSPDELQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQFAQFTKFEDISEEKVPELPRLHERVESNMFFC
Sbjct:  620 MDVSHGSPGRADVPSIAAVVGSKNW--PLISRYRAAVRTQSPKLEMIDSLFQPVEDPVNGDNGIMNELFVEFFKTSNARKPKQIIIFRDGVSESQFNQVLNIEVDQIIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVHPTNYDFYMCAHAGIIGTSRPAHYHVLLDEIGFSPDELQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQFAQFTKFEDISEEKVPELPRLHERVESNMFFC 875
[Close]
BLAST of BolSC94t61271H-R vs. GenBank_protein
Match: KAF8105240.1 (hypothetical protein N665_0161s0038 [Sinapis alba])

HSP 1 Score: 461 bits (1187), Expect = 1.470e-154
Identity = 237/258 (91.86%), Postives = 242/258 (93.80%), Query Frame = 0 
Query:    1 MDVSHGSPGRADVPSVAAVLQHSYFSCPL---YRAAVRTQSPKLEMIDSLFQPVDDPVNGDNA---NCLLEFFKTSNARKPKQIIIFRDGVSESQFNQVLNIEVDQIIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVHPTNYDFYMCAHAGIIGTSRPAHYHVLLDEIGFSPDELQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQFAQFTKFEDISEEKVPELPRLHERVESNMFFC 252
            MDVSHGSPGRADVPSVAAV+    +  PL   YRAAVR+QSPKLEMIDSLFQPVDDPVNGDN       +EFFKTSNARKPKQIIIFRDGVSESQFNQVLNIEVDQIIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVHPTNYDFYMCAHAGIIGTSRPAHYHVLLDEIGFSPD+LQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQFAQFTKFEDISEEKVPELPRLHERVESNMFFC
Sbjct:  611 MDVSHGSPGRADVPSVAAVVGSKNW--PLISRYRAAVRSQSPKLEMIDSLFQPVDDPVNGDNGIMNELFVEFFKTSNARKPKQIIIFRDGVSESQFNQVLNIEVDQIIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVHPTNYDFYMCAHAGIIGTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQFAQFTKFEDISEEKVPELPRLHERVESNMFFC 866
[Close]
BLAST of BolSC94t61271H-R vs. GenBank_protein
Match: XP_009132895.1 (protein argonaute 6 isoform X2 [Brassica rapa] >XP_009132896.1 protein argonaute 6 isoform X2 [Brassica rapa] >XP_013734203.1 protein argonaute 6-like [Brassica napus] >XP_013734204.1 protein argonaute 6-like [Brassica napus] >RID69596.1 hypothetical protein BRARA_C01682 [Brassica rapa] >VDC79888.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 461 bits (1187), Expect = 1.510e-154
Identity = 236/258 (91.47%), Postives = 242/258 (93.80%), Query Frame = 0 
Query:    1 MDVSHGSPGRADVPSVAAVLQHSYFSCPL---YRAAVRTQSPKLEMIDSLFQPVDDPVNGDNA---NCLLEFFKTSNARKPKQIIIFRDGVSESQFNQVLNIEVDQIIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVHPTNYDFYMCAHAGIIGTSRPAHYHVLLDEIGFSPDELQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQFAQFTKFEDISEEKVPELPRLHERVESNMFFC 252
            MDVSHGSPGRADVPS+AAV+    +  PL   YRAAVRTQSPK+EMIDSLFQPV+DPVNGDN       +EFFKTSNARKPKQIIIFRDGVSESQFNQVLNIEVDQIIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVHPTNYDFYMCAHAGIIGTSRPAHYHVLLDEIGFSPDELQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQFAQFTKFEDISEEKVPELPRLHERVESNMFFC
Sbjct:  612 MDVSHGSPGRADVPSIAAVVGSKNW--PLISRYRAAVRTQSPKMEMIDSLFQPVEDPVNGDNGIMNELFVEFFKTSNARKPKQIIIFRDGVSESQFNQVLNIEVDQIIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVHPTNYDFYMCAHAGIIGTSRPAHYHVLLDEIGFSPDELQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQFAQFTKFEDISEEKVPELPRLHERVESNMFFC 867
[Close]
BLAST of BolSC94t61271H-R vs. GenBank_protein
Match: XP_033143065.1 (protein argonaute 6 isoform X1 [Brassica rapa])

HSP 1 Score: 461 bits (1187), Expect = 5.110e-154
Identity = 236/258 (91.47%), Postives = 242/258 (93.80%), Query Frame = 0 
Query:    1 MDVSHGSPGRADVPSVAAVLQHSYFSCPL---YRAAVRTQSPKLEMIDSLFQPVDDPVNGDNA---NCLLEFFKTSNARKPKQIIIFRDGVSESQFNQVLNIEVDQIIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVHPTNYDFYMCAHAGIIGTSRPAHYHVLLDEIGFSPDELQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQFAQFTKFEDISEEKVPELPRLHERVESNMFFC 252
            MDVSHGSPGRADVPS+AAV+    +  PL   YRAAVRTQSPK+EMIDSLFQPV+DPVNGDN       +EFFKTSNARKPKQIIIFRDGVSESQFNQVLNIEVDQIIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVHPTNYDFYMCAHAGIIGTSRPAHYHVLLDEIGFSPDELQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQFAQFTKFEDISEEKVPELPRLHERVESNMFFC
Sbjct:  658 MDVSHGSPGRADVPSIAAVVGSKNW--PLISRYRAAVRTQSPKMEMIDSLFQPVEDPVNGDNGIMNELFVEFFKTSNARKPKQIIIFRDGVSESQFNQVLNIEVDQIIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVHPTNYDFYMCAHAGIIGTSRPAHYHVLLDEIGFSPDELQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQFAQFTKFEDISEEKVPELPRLHERVESNMFFC 913
[Close]
BLAST of BolSC94t61271H-R vs. GenBank_protein
Match: XP_013683431.1 (protein argonaute 6-like isoform X1 [Brassica napus])

HSP 1 Score: 458 bits (1179), Expect = 2.390e-153
Identity = 235/258 (91.09%), Postives = 241/258 (93.41%), Query Frame = 0 
Query:    1 MDVSHGSPGRADVPSVAAVLQHSYFSCPL---YRAAVRTQSPKLEMIDSLFQPVDDPVNGDNA---NCLLEFFKTSNARKPKQIIIFRDGVSESQFNQVLNIEVDQIIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVHPTNYDFYMCAHAGIIGTSRPAHYHVLLDEIGFSPDELQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQFAQFTKFEDISEEKVPELPRLHERVESNMFFC 252
            MDVSHGSPGRADVPSVAAV+    +  PL   YRAAVRTQSPK+EMIDSLFQPV+DPVNGDN       +EFFKTSNARKPKQIIIFRDGVSESQFNQVLNIEVDQIIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVHPTNYDFYMCAHAGIIGTSRPAHYHVLLDEIGFSPDELQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQFAQFTKFED+SEEKVPELPRL ERVESNMFFC
Sbjct:  612 MDVSHGSPGRADVPSVAAVVGSKNW--PLISRYRAAVRTQSPKMEMIDSLFQPVEDPVNGDNGIMNELFVEFFKTSNARKPKQIIIFRDGVSESQFNQVLNIEVDQIIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVHPTNYDFYMCAHAGIIGTSRPAHYHVLLDEIGFSPDELQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQFAQFTKFEDVSEEKVPELPRLQERVESNMFFC 867
The following BLAST results are available for this feature:
BLAST of BolSC94t61271H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
VDD66043.13.340e-182100.00unnamed protein product [Brassica oleracea][more]
KAG2332768.11.250e-15590.31hypothetical protein Bca52824_003948 [Brassica car... [more]
XP_013630625.14.550e-15592.25PREDICTED: protein argonaute 6 [Brassica oleracea ... [more]
CAF1699792.15.350e-15592.25unnamed protein product [Brassica napus][more]
XP_018472619.17.550e-15591.86PREDICTED: protein argonaute 6 [Raphanus sativus][more]
KAG2296674.19.370e-15591.86hypothetical protein Bca52824_043343 [Brassica car... [more]
KAF8105240.11.470e-15491.86hypothetical protein N665_0161s0038 [Sinapis alba][more]
XP_009132895.11.510e-15491.47protein argonaute 6 isoform X2 [Brassica rapa] >XP... [more]
XP_033143065.15.110e-15491.47protein argonaute 6 isoform X1 [Brassica rapa][more]
XP_013683431.12.390e-15391.09protein argonaute 6-like isoform X1 [Brassica napu... [more]

Pages

back to top
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031047 gene silencing by RNA
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003165Piwi domainSMARTSM00950Piwi_a_2coord: 1..226
e-value: 3.3E-53
score: 192.8
IPR003165Piwi domainPFAMPF02171Piwicoord: 1..225
e-value: 1.3E-74
score: 251.2
IPR003165Piwi domainPROSITEPS50822PIWIcoord: 1..226
score: 30.508322
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..252
e-value: 5.0E-90
score: 303.4
NoneNo IPR availablePANTHERPTHR22891EUKARYOTIC TRANSLATION INITIATION FACTOR 2Ccoord: 1..251
NoneNo IPR availablePANTHERPTHR22891:SF149PROTEIN ARGONAUTE 6coord: 1..251
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 1..224

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Boleracea_scaffold_94contigBoleracea_scaffold_94:15478..17019 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolSC94t61271H-RBolSC94t61271H-RBrassica oleracea HDEMmRNABoleracea_scaffold_94 15478..17019 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolSC94t61271H-R-P ID=BolSC94t61271H-R-P|Name=BolSC94t61271H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=253bp
MDVSHGSPGRADVPSVAAVLQHSYFSCPLYRAAVRTQSPKLEMIDSLFQP
VDDPVNGDNANCLLEFFKTSNARKPKQIIIFRDGVSESQFNQVLNIEVDQ
IIKAYQRLGETDVPKFTVIVAQKRHHTKLFQAKGHENVPAGTVVDTKIVH
PTNYDFYMCAHAGIIGTSRPAHYHVLLDEIGFSPDELQNLIHSLSYVNQR
STTATSIVAPVRYAHLAAAQFAQFTKFEDISEEKVPELPRLHERVESNMF
FC.
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR036397RNaseH_sf
IPR003165Piwi
Vocabulary: Biological Process
TermDefinition
GO:0031047gene silencing by RNA
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane