BolSC55t61217H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolSC55t61217H-R
Unique NameBolSC55t61217H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length171
Homology
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BLAST of BolSC55t61217H-R vs. GenBank_protein
Match: XP_013615078.1 (PREDICTED: probable glutathione peroxidase 4 [Brassica oleracea var. oleracea] >KAG2290432.1 hypothetical protein Bca52824_050036 [Brassica carinata] >VDD65989.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 342 bits (876), Expect = 1.880e-118
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0 
Query:    1 MGASVSVPERSVHQFTVKDSSGKDVNLSIYQGKVLLLVNVASKCGFTESNYTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQEAHEFACTRFQAEYPVFQKVRVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRYGTMVTPLSIEKDIIKALEEA 170
            MGASVSVPERSVHQFTVKDSSGKDVNLSIYQGKVLLLVNVASKCGFTESNYTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQEAHEFACTRFQAEYPVFQKVRVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRYGTMVTPLSIEKDIIKALEEA
Sbjct:    1 MGASVSVPERSVHQFTVKDSSGKDVNLSIYQGKVLLLVNVASKCGFTESNYTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQEAHEFACTRFQAEYPVFQKVRVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRYGTMVTPLSIEKDIIKALEEA 170
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BLAST of BolSC55t61217H-R vs. GenBank_protein
Match: CDY72064.1 (BnaC04g51730D, partial [Brassica napus])

HSP 1 Score: 342 bits (876), Expect = 2.160e-118
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0 
Query:    1 MGASVSVPERSVHQFTVKDSSGKDVNLSIYQGKVLLLVNVASKCGFTESNYTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQEAHEFACTRFQAEYPVFQKVRVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRYGTMVTPLSIEKDIIKALEEA 170
            MGASVSVPERSVHQFTVKDSSGKDVNLSIYQGKVLLLVNVASKCGFTESNYTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQEAHEFACTRFQAEYPVFQKVRVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRYGTMVTPLSIEKDIIKALEEA
Sbjct:    5 MGASVSVPERSVHQFTVKDSSGKDVNLSIYQGKVLLLVNVASKCGFTESNYTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQEAHEFACTRFQAEYPVFQKVRVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRYGTMVTPLSIEKDIIKALEEA 174
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BLAST of BolSC55t61217H-R vs. GenBank_protein
Match: KAF2563633.1 (hypothetical protein F2Q70_00014529 [Brassica cretica])

HSP 1 Score: 339 bits (869), Expect = 2.200e-117
Identity = 169/170 (99.41%), Postives = 169/170 (99.41%), Query Frame = 0 
Query:    1 MGASVSVPERSVHQFTVKDSSGKDVNLSIYQGKVLLLVNVASKCGFTESNYTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQEAHEFACTRFQAEYPVFQKVRVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRYGTMVTPLSIEKDIIKALEEA 170
            MGASVSVPERSVHQFTVKDSSGKDVNLSIY GKVLLLVNVASKCGFTESNYTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQEAHEFACTRFQAEYPVFQKVRVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRYGTMVTPLSIEKDIIKALEEA
Sbjct:    1 MGASVSVPERSVHQFTVKDSSGKDVNLSIYLGKVLLLVNVASKCGFTESNYTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQEAHEFACTRFQAEYPVFQKVRVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRYGTMVTPLSIEKDIIKALEEA 170
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BLAST of BolSC55t61217H-R vs. GenBank_protein
Match: KAG2326012.1 (hypothetical protein Bca52824_008740 [Brassica carinata])

HSP 1 Score: 338 bits (868), Expect = 3.120e-117
Identity = 168/170 (98.82%), Postives = 169/170 (99.41%), Query Frame = 0 
Query:    1 MGASVSVPERSVHQFTVKDSSGKDVNLSIYQGKVLLLVNVASKCGFTESNYTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQEAHEFACTRFQAEYPVFQKVRVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRYGTMVTPLSIEKDIIKALEEA 170
            MGASVSVPERSVHQFTVKDSSGKDVNLSIYQGKVLLLVNVASKCGFTESNYTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQEAHEFACTRFQAEYPVFQK+RVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRYGTMVTPLSIEKDI KALEEA
Sbjct:    1 MGASVSVPERSVHQFTVKDSSGKDVNLSIYQGKVLLLVNVASKCGFTESNYTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQEAHEFACTRFQAEYPVFQKIRVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRYGTMVTPLSIEKDIKKALEEA 170
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BLAST of BolSC55t61217H-R vs. GenBank_protein
Match: XP_009142473.1 (probable glutathione peroxidase 4 isoform X2 [Brassica rapa] >XP_022575944.1 probable glutathione peroxidase 4 [Brassica napus] >KAG5395427.1 hypothetical protein IGI04_017241 [Brassica rapa subsp. trilocularis] >RID60806.1 hypothetical protein BRARA_E00003 [Brassica rapa])

HSP 1 Score: 337 bits (865), Expect = 8.960e-117
Identity = 168/170 (98.82%), Postives = 168/170 (98.82%), Query Frame = 0 
Query:    1 MGASVSVPERSVHQFTVKDSSGKDVNLSIYQGKVLLLVNVASKCGFTESNYTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQEAHEFACTRFQAEYPVFQKVRVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRYGTMVTPLSIEKDIIKALEEA 170
            MGASVSVPERSVHQFTVKDSSGKDVNLSIYQGKVLLLVNVASKCGFTESNYTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQEAHEFACTRFQAEYPVFQKVRVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRYGTM TPLSIEKDI KALEEA
Sbjct:    1 MGASVSVPERSVHQFTVKDSSGKDVNLSIYQGKVLLLVNVASKCGFTESNYTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQEAHEFACTRFQAEYPVFQKVRVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRYGTMATPLSIEKDIKKALEEA 170
[Close]
BLAST of BolSC55t61217H-R vs. GenBank_protein
Match: XP_013731144.2 (probable glutathione peroxidase 4 [Brassica napus])

HSP 1 Score: 337 bits (865), Expect = 1.520e-116
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 
Query:    3 ASVSVPERSVHQFTVKDSSGKDVNLSIYQGKVLLLVNVASKCGFTESNYTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQEAHEFACTRFQAEYPVFQKVRVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRYGTMVTPLSIEKDIIKALEEA 170
            ASVSVPERSVHQFTVKDSSGKDVNLSIYQGKVLLLVNVASKCGFTESNYTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQEAHEFACTRFQAEYPVFQKVRVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRYGTMVTPLSIEKDIIKALEEA
Sbjct:   18 ASVSVPERSVHQFTVKDSSGKDVNLSIYQGKVLLLVNVASKCGFTESNYTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQEAHEFACTRFQAEYPVFQKVRVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRYGTMVTPLSIEKDIIKALEEA 185
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BLAST of BolSC55t61217H-R vs. GenBank_protein
Match: KAF8074360.1 (hypothetical protein N665_1107s0001 [Sinapis alba] >KAF8074361.1 hypothetical protein N665_1107s0002 [Sinapis alba])

HSP 1 Score: 336 bits (861), Expect = 3.650e-116
Identity = 166/170 (97.65%), Postives = 168/170 (98.82%), Query Frame = 0 
Query:    1 MGASVSVPERSVHQFTVKDSSGKDVNLSIYQGKVLLLVNVASKCGFTESNYTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQEAHEFACTRFQAEYPVFQKVRVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRYGTMVTPLSIEKDIIKALEEA 170
            MGASVSVPERSVHQFTVKDSSGKDVNLSIYQGKVLLLVNVASKCGFTESNYTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQEAH+FACTRFQAEYPVFQK+RVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRYGTM TPLSIEKDI KALEEA
Sbjct:    1 MGASVSVPERSVHQFTVKDSSGKDVNLSIYQGKVLLLVNVASKCGFTESNYTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQEAHDFACTRFQAEYPVFQKIRVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRYGTMATPLSIEKDIKKALEEA 170
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BLAST of BolSC55t61217H-R vs. GenBank_protein
Match: VDD16442.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 335 bits (859), Expect = 7.360e-116
Identity = 166/170 (97.65%), Postives = 169/170 (99.41%), Query Frame = 0 
Query:    1 MGASVSVPERSVHQFTVKDSSGKDVNLSIYQGKVLLLVNVASKCGFTESNYTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQEAHEFACTRFQAEYPVFQKVRVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRYGTMVTPLSIEKDIIKALEEA 170
            MGASVSVPERSVH+FTVKDSSGKDVNLSIYQGKVLLLVNVASKCGFTESNYTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQEAH+FACTRFQAEYPVFQKVRVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRYGTMVTPLSIEKDI KALE+A
Sbjct:    1 MGASVSVPERSVHEFTVKDSSGKDVNLSIYQGKVLLLVNVASKCGFTESNYTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQEAHDFACTRFQAEYPVFQKVRVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRYGTMVTPLSIEKDIKKALEKA 170
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BLAST of BolSC55t61217H-R vs. GenBank_protein
Match: XP_013732559.1 (probable glutathione peroxidase 4 [Brassica napus] >CDY66093.1 BnaA04g29610D [Brassica napus])

HSP 1 Score: 334 bits (856), Expect = 2.110e-115
Identity = 165/170 (97.06%), Postives = 169/170 (99.41%), Query Frame = 0 
Query:    1 MGASVSVPERSVHQFTVKDSSGKDVNLSIYQGKVLLLVNVASKCGFTESNYTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQEAHEFACTRFQAEYPVFQKVRVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRYGTMVTPLSIEKDIIKALEEA 170
            MGASVSVPERSVH+FTVKDSSGKDVNLSIYQGKVLLLVNVASKCGFTESNYTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQ+AH+FACTRFQAEYPVFQKVRVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRYGTMVTPLSIEKDI KALE+A
Sbjct:    1 MGASVSVPERSVHEFTVKDSSGKDVNLSIYQGKVLLLVNVASKCGFTESNYTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQDAHDFACTRFQAEYPVFQKVRVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRYGTMVTPLSIEKDIKKALEKA 170
[Close]
BLAST of BolSC55t61217H-R vs. GenBank_protein
Match: XP_018437999.1 (PREDICTED: probable glutathione peroxidase 4 [Raphanus sativus])

HSP 1 Score: 333 bits (854), Expect = 4.260e-115
Identity = 166/170 (97.65%), Postives = 166/170 (97.65%), Query Frame = 0 
Query:    1 MGASVSVPERSVHQFTVKDSSGKDVNLSIYQGKVLLLVNVASKCGFTESNYTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQEAHEFACTRFQAEYPVFQKVRVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRYGTMVTPLSIEKDIIKALEEA 170
            MGASVSVPERSVHQFTVKDSSGKDVNLSIYQGKVLLLVNVASKC FTESNYTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQEAHEFAC RFQAEYPVFQKVRVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRYGTM TPLSIEKDI KALEEA
Sbjct:    1 MGASVSVPERSVHQFTVKDSSGKDVNLSIYQGKVLLLVNVASKCSFTESNYTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQEAHEFACARFQAEYPVFQKVRVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRYGTMATPLSIEKDIKKALEEA 170
The following BLAST results are available for this feature:
BLAST of BolSC55t61217H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
XP_013615078.11.880e-118100.00PREDICTED: probable glutathione peroxidase 4 [Bras... [more]
CDY72064.12.160e-118100.00BnaC04g51730D, partial [Brassica napus][more]
KAF2563633.12.200e-11799.41hypothetical protein F2Q70_00014529 [Brassica cret... [more]
KAG2326012.13.120e-11798.82hypothetical protein Bca52824_008740 [Brassica car... [more]
XP_009142473.18.960e-11798.82probable glutathione peroxidase 4 isoform X2 [Bras... [more]
XP_013731144.21.520e-116100.00probable glutathione peroxidase 4 [Brassica napus][more]
KAF8074360.13.650e-11697.65hypothetical protein N665_1107s0001 [Sinapis alba]... [more]
VDD16442.17.360e-11697.65unnamed protein product [Brassica rapa][more]
XP_013732559.12.110e-11597.06probable glutathione peroxidase 4 [Brassica napus]... [more]
XP_018437999.14.260e-11597.65PREDICTED: probable glutathione peroxidase 4 [Raph... [more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0098869 cellular oxidant detoxification
biological_process GO:0006979 response to oxidative stress
cellular_component GO:0005829 cytosol
cellular_component GO:0012505 endomembrane system
molecular_function GO:0004602 glutathione peroxidase activity
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000889Glutathione peroxidasePRINTSPR01011GLUTPROXDASEcoord: 30..47
score: 66.31
coord: 66..82
score: 70.31
coord: 131..140
score: 82.86
IPR000889Glutathione peroxidasePFAMPF00255GSHPxcoord: 12..120
e-value: 1.1E-39
score: 134.4
IPR000889Glutathione peroxidasePIRSFPIRSF000303Glutathion_peroxcoord: 3..170
e-value: 3.8E-65
score: 215.6
IPR000889Glutathione peroxidasePANTHERPTHR11592GLUTATHIONE PEROXIDASEcoord: 1..164
IPR000889Glutathione peroxidasePROSITEPS51355GLUTATHIONE_PEROXID_3coord: 2..170
score: 68.782303
IPR000889Glutathione peroxidaseCDDcd00340GSH_Peroxidasecoord: 11..163
e-value: 3.363E-87
score: 250.51
NoneNo IPR availableGENE3D3.40.30.10Glutaredoxincoord: 4..170
e-value: 3.3E-71
score: 240.1
NoneNo IPR availablePANTHERPTHR11592:SF117GLUTATHIONE PEROXIDASEcoord: 1..164
IPR029759Glutathione peroxidase active sitePROSITEPS00460GLUTATHIONE_PEROXID_1coord: 32..47
IPR029760Glutathione peroxidase conserved sitePROSITEPS00763GLUTATHIONE_PEROXID_2coord: 69..76
IPR013766Thioredoxin domainPROSITEPS51352THIOREDOXIN_2coord: 6..170
score: 9.30509
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 11..168

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Boleracea_scaffold_55contigBoleracea_scaffold_55:4524..5617 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolSC55t61217H-RBolSC55t61217H-RBrassica oleracea HDEMmRNABoleracea_scaffold_55 4524..5617 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolSC55t61217H-R-P ID=BolSC55t61217H-R-P|Name=BolSC55t61217H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=171bp
MGASVSVPERSVHQFTVKDSSGKDVNLSIYQGKVLLLVNVASKCGFTESN
YTQLTELYRKYKDQGFEILAFPCNQFLYQEPGTSQEAHEFACTRFQAEYP
VFQKVRVNGQNAAPLYKFLKASKPTFLGSRIKWNFTKFLVSKDGIVIDRY
GTMVTPLSIEKDIIKALEEA.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR013766Thioredoxin_domain
IPR029760GPX_CS
IPR029759GPX_AS
IPR000889Glutathione_peroxidase
Vocabulary: Biological Process
TermDefinition
GO:0098869cellular oxidant detoxification
GO:0006979response to oxidative stress
Vocabulary: Molecular Function
TermDefinition
GO:0004602glutathione peroxidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0012505endomembrane system
GO:0005829cytosol