BolSC49t61204H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolSC49t61204H-R
Unique NameBolSC49t61204H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length62
Homology
[Close]
BLAST of BolSC49t61204H-R vs. GenBank_protein
Match: YP_001123098.1 (photosystem II protein K [Olimarabidopsis pumila] >YP_001123269.1 PSII K protein [Barbarea verna] >YP_001123356.1 photosystem II protein K [Capsella bursa-pastoris] >YP_001123445.1 photosystem II protein K [Crucihimalaya wallichii] >YP_001123708.1 photosystem II protein K [Lobularia maritima] >YP_005089935.1 psbK gene product [Brassica napus] >YP_009161904.1 photosystem II protein K [Capsella rubella] >YP_009177848.1 photosystem II protein K [Brassica juncea] >YP_009182874.1 photosystem II protein K [Capsella grandiflora] >YP_009192684.1 photosystem II protein K [Schrenkiella parvula] >YP_009192771.1 photosystem II protein K [Eutrema yunnanense] >YP_009192858.1 photosystem II protein K [Eutrema heterophyllum] >YP_009230804.1 PSII K protein [Arabidopsis arenosa] >YP_009230974.1 PSII K protein [Arabidopsis pedemontana] >YP_009231058.1 photosystem II protein K [Camelina sativa] >YP_009257896.1 PSII K protein [Arabidopsis croatica] >YP_009257981.1 PSII K protein [Arabidopsis neglecta] >YP_009258066.1 PSII K protein [Arabidopsis petrogena] >YP_009258236.1 PSII K protein [Arabidopsis umezawana] >YP_009259562.1 PsbK [Brassica nigra] >YP_009261679.1 photosystem II protein K [Pugionium dolabratum] >YP_009261764.1 photosystem II protein K [Pugionium cornutum] >YP_009353733.1 PsbK [Alyssum desertorum] >YP_009356166.1 PSII K protein [Megacarpaea delavayi] >YP_009356251.1 PSII K protein [Neotorularia korolkowii] >YP_009356680.1 photosystem II protein K [Arabidopsis halleri] >YP_009400070.1 photosystem II protein K [Sinapis arvensis] >YP_009409448.1 photosystem II protein K [Hesperis matronalis] >YP_009409534.1 photosystem II protein K [Hesperis sylvestris] >YP_009409618.1 photosystem II protein K [Lobularia libyca] >YP_009409791.1 photosystem II protein K [Braya humilis] >YP_009437952.1 PSII K protein [Bunias erucago] >YP_009438037.1 PSII K protein [Bunias orientalis] >YP_009486278.1 photosystem II protein K [Draba oreades] >YP_009539840.1 PSII K protein [Biscutella baetica] >YP_009540101.1 PSII K protein [Lunaria rediviva] >YP_009553750.1 photosystem II protein K [Brassica rapa] >YP_009564558.1 photosystem II protein K [Brassica oleracea] >YP_009730650.1 photosystem II protein K [Sinapis alba] >YP_009890465.1 PSII K protein [Alyssum alyssoides] >YP_009890549.1 PSII K protein [Asperuginoides axillaris] >YP_009890722.1 PSII K protein [Alyssum dasycarpum] >YP_009890981.1 PSII K protein [Arabis josiae] >YP_009891239.1 PSII K protein [Alyssopsis mollis] >YP_009891492.1 PSII K protein [Alliaria petiolata] >YP_009891663.1 PSII K protein [Asta schaffneri] >YP_009893049.1 PSII K protein [Chamira circaeoides] >YP_009893395.1 PSII K protein [Calepina irregularis] >YP_009893742.1 PSII K protein [Crucihimalaya lasiocarpa] >YP_009894261.1 PSII K protein [Cremolobus peruvianus] >YP_009894694.1 PSII K protein [Draba aizoides] >YP_009894955.1 PSII K protein [Dipoma iberideum] >YP_009895041.1 PSII K protein [Draba incana] >YP_009895214.1 PSII K protein [Draba oligosperma] >YP_009895474.1 PSII K protein [Diptychocarpus strictus] >YP_009895731.1 PSII K protein [Erysimum bicolor] >YP_009895818.1 PSII K protein [Smelowskia integrifolia] >YP_009895991.1 PSII K protein [Erysimum odoratum] >YP_009896252.1 PSII K protein [Guiraoa arvensis] >YP_009896339.1 PSII K protein [Goldbachia laevigata] >YP_009896599.1 PSII K protein [Horwoodia dicksoniae] >YP_009896859.1 PSII K protein [Hilliella paradoxa] >YP_009896943.1 PSII K protein [Hesperis persica] >YP_009897279.1 PSII K protein [Hesperis tristis] >YP_009897366.1 PSII K protein [Iskandera alaica] >YP_009897872.1 PSII K protein [Lepidium echinatum] >YP_009898130.1 PSII K protein [Lepidium perfoliatum] >YP_009898386.1 PSII K protein [Mathewsia auriculata] >YP_009898644.1 PSII K protein [Menonvillea linearis] >YP_009898731.1 PSII K protein [Matthiola longipetala] >YP_009898818.1 PSII K protein [Malcolmia maritima] >YP_009899078.1 PSII K protein [Matthiola ovatifolia] >YP_009899422.1 PSII K protein [Megacarpaea polyandra] >YP_009899846.1 PSII K protein [Neotorularia torulosa] >YP_009907344.1 PsbK [Brassica rapa subsp. rapa] >YP_009930788.1 PSII K protein [Anzhengxia yechengnica] >YP_009930873.1 PSII K protein [Atelanthera perpusilla] >YP_009930958.1 PSII K protein [Braya alpina] >YP_009931043.1 PSII K protein [Braya rosea] >YP_009931128.1 PSII K protein [Braya scharnhorstii] >YP_009931213.1 PSII K protein [Catenulina hedysaroides] >YP_009931298.1 PSII K protein [Christolea crassifolia] >YP_009931383.1 PSII K protein [Cryptospora falcata] >YP_009931468.1 PSII K protein [Cymatocarpus pilosissimus] >YP_009931553.1 PSII K protein [Dichasianthus subtilissimus] >YP_009931723.1 PSII K protein [Lachnoloma lehmannii] >YP_009931978.1 PSII K protein [Leptaleum filifolium] >YP_009932147.1 PSII K protein [Octoceras lehmannianum] >YP_009932232.1 PSII K protein [Pycnoplinthus uniflorus] >YP_009932572.1 PSII K protein [Shangrilaia nana] >YP_009934339.1 PSII K protein [Streptoloma desertorum] >YP_009934423.1 PSII K protein [Malcolmia africana] >YP_010008354.1 PSII K protein [Braya fengii] >YP_010008439.1 PSII K protein [Braya parvia] >YP_010008524.1 PSII K protein [Braya thomsonii] >YP_010008609.1 PSII K protein [Cryptospora inconspicua] >YP_010008694.1 PSII K protein [Cymatocarpus grossheimii] >YP_010008779.1 PSII K protein [Cymatocarpus heterophyllus] >YP_010008864.1 PSII K protein [Lepidostemon rosularis] >YP_010008949.1 PSII K protein [Neotorularia rossica] >YP_010009623.1 PSII K protein [Strigosella latifolia] >YP_010009707.1 PSII K protein [Strigosella malacotricha] >YP_010009791.1 PSII K protein [Strigosella scorpioides] >YP_010009876.1 PSII K protein [Strigosella strigosa] >YP_010009961.1 PSII K protein [Tetracme recurvata] >P10347.1 RecName: Full=Photosystem II reaction center protein K; Short=PSII-K; Flags: Precursor [Sinapis alba] >AKM97901.1 PsbK [Brassica oleracea var. capitata] >ANH20853.1 photosystem II protein K [Arabidopsis halleri subsp. gemmifera] >ANW83260.1 PsbK [Brassica napus var. napus] >ASJ64024.1 photosystem II protein K [Anastatica hierochuntica] >ASJ64282.1 photosystem II protein K [Euclidium syriacum] >ASJ64366.1 photosystem II protein K [Farsetia stylosa] >ASM41909.1 photosystem II protein K [Alyssum gmelinii] >ASY93432.1 PsbK [Brassica rapa subsp. chinensis] >ASY93519.1 PsbK [Brassica rapa subsp. pekinensis] >ASY94041.1 PsbK [Brassica oleracea var. botrytis] >ASY94128.1 PsbK [Brassica oleracea var. gongylodes] >ASY94215.1 PsbK [Brassica oleracea var. italica] >ASY94650.1 PsbK [Brassica juncea subsp. integrifolia] >ASY95346.1 PsbK [Brassica carinata] >QHN89796.1 photosystem II protein K [Erysimum cheiranthoides] >QKG03313.1 photosystem II protein K [Erysimum angustatum] >QKG03398.1 photosystem II protein K [Erysimum teretifolium] >QKK47691.1 PSII K protein [Pennellia longifolia] >QKK47778.1 PSII K protein [Parolinia ornata] >QKK48033.1 PSII K protein [Pugionium pterocarpum] >QKK48205.1 PSII K protein [Pseudoarabidopsis toxophylla] >QKK48897.1 PSII K protein [Smelowskia altaica] >QKK49071.1 PSII K protein [Smelowskia annua] >QKK49853.1 PSII K protein [Stenopetalum lineare] >QKK50375.1 PSII K protein [Schouwia purpurea] >QKK50461.1 PSII K protein [Scapiarabis saxicola] >QKK50548.1 PSII K protein [Sterigmostemum violaceum] >QKK50635.1 PSII K protein [Schizopetalon walkeri] >QKK51324.1 PSII K protein [Yinshania acutangula] >QKK51411.1 PSII K protein [Yinshania furcatopilosa] >QKK51498.1 PSII K protein [Yinshania henryi] >QKK51671.1 PSII K protein [Atacama nivea] >QKK51845.1 PSII K protein [Farsetia occidentalis] >QKK51932.1 PSII K protein [Halimolobos jaegeri] >QKK52018.1 PSII K protein [Malcolmia bicolor] >QNR90827.1 PSII K protein [Lepidostemon sp. C254] >QUI76275.1 photosystem II protein K [Moricandia arvensis] >CUA65302.1 PSII K protein [Arabidopsis halleri subsp. halleri] >CZF89769.1 PSII K protein [Arabidopsis cebennensis] >CZF90109.1 PSII K protein [Arabidopsis halleri subsp. dacica] >CZF90534.1 PSII K protein [Arabidopsis halleri subsp. ovirensis] >CZF90704.1 PSII K protein [Arabidopsis halleri subsp. tatrica] >CZF90874.1 PSII K protein [Arabidopsis kamchatica subsp. kamchatica] >CZF91129.1 PSII K protein [Arabidopsis kamchatica subsp. kawasakiana] >CZF91894.1 PSII K protein [Arabidopsis lyrata subsp. petraea] >CZF93084.1 PSII K protein [Arabidopsis neglecta subsp. neglecta] >CZF94019.1 PSII K protein [Arabidopsis petraea subsp. septentrionalis] >SOG98137.1 PSII K protein [Arabidopsis arenosa subsp. borbasii] >BBN90916.1 photosystem II protein K [Eutrema japonicum] >BBN91416.1 photosystem II protein K [Eutrema tenue])

HSP 1 Score: 115 bits (287), Expect = 4.550e-32
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 
Query:    1 MLNIFNLICICFNSALFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 61
            MLNIFNLICICFNSALFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR
Sbjct:    1 MLNIFNLICICFNSALFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 61
[Close]
BLAST of BolSC49t61204H-R vs. GenBank_protein
Match: YP_009342490.1 (photosystem II protein K [Orychophragmus diffusus] >YP_009342575.1 photosystem II protein K [Orychophragmus taibaiensis] >YP_009342660.1 photosystem II protein K [Orychophragmus hupehensis] >YP_009895388.1 PSII K protein [Descurainia sophia] >YP_009895905.1 PSII K protein [Eudema nubigena] >YP_009900189.1 PSII K protein [Orychophragmus violaceus] >APS85064.1 photosystem II protein K [Orychophragmus zhongtiaoshanus] >APS85234.1 photosystem II protein K [Orychophragmus longisiliquus] >QKK48637.1 PSII K protein [Robeschia schimperii] >QKK51152.1 PSII K protein [Teesdalia nudicaulis] >APO08509.1 photosystem II protein K [Orychophragmus violaceus])

HSP 1 Score: 114 bits (286), Expect = 6.470e-32
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0 
Query:    1 MLNIFNLICICFNSALFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 61
            MLNIFNLICICFNSALFSSTFLVAKLPEAYAFLNPIVD+MPVIPLFFLLLAFVWQAAVSFR
Sbjct:    1 MLNIFNLICICFNSALFSSTFLVAKLPEAYAFLNPIVDIMPVIPLFFLLLAFVWQAAVSFR 61
[Close]
BLAST of BolSC49t61204H-R vs. GenBank_protein
Match: YP_009931638.1 (PSII K protein [Dilophia salsa] >QKK49592.1 PSII K protein [Sphaerocardamum divaricatum] >QNR90402.1 PSII K protein [Dilophia salsa])

HSP 1 Score: 114 bits (286), Expect = 6.470e-32
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0 
Query:    1 MLNIFNLICICFNSALFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 61
            MLNIFNLICICFNSALFSSTFL+AKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR
Sbjct:    1 MLNIFNLICICFNSALFSSTFLIAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 61
[Close]
BLAST of BolSC49t61204H-R vs. GenBank_protein
Match: YP_009046897.1 (photosystem II protein [Raphanus sativus] >APW82266.1 PsbK [Raphanus sativus var. raphanistroides] >ASY94302.1 PsbK [Raphanus raphanistrum subsp. landra] >ASY94476.1 PsbK [Raphanus sativus var. sativus] >QKK51584.1 PSII K protein [Zuvanda crenulata] >BAF42778.1 photosystem II protein K [Brassica oleracea var. capitata x Raphanus sativus])

HSP 1 Score: 114 bits (286), Expect = 6.470e-32
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0 
Query:    1 MLNIFNLICICFNSALFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 61
            MLNIFNLICICFNSALFSSTFLVAKLPEAYAFLNPI+DVMPVIPLFFLLLAFVWQAAVSFR
Sbjct:    1 MLNIFNLICICFNSALFSSTFLVAKLPEAYAFLNPIIDVMPVIPLFFLLLAFVWQAAVSFR 61
[Close]
BLAST of BolSC49t61204H-R vs. GenBank_protein
Match: YP_001123620.1 (photosystem II protein K [Lepidium virginicum] >YP_009356423.1 PSII K protein [Lepidium meyenii] >YP_009756437.1 photosystem II protein K [Lepidium sativum] >YP_009947358.1 photosystem II protein K [Lepidium apetalum] >YP_010029926.1 photosystem II protein K [Lepidium latifolium] >AMC31836.1 photosystem II protein K [Lepidium densiflorum] >AQV10585.1 PSII K protein [Lepidium meyenii] >ARI44158.1 photosystem II protein K [Lepidium meyenii] >QIZ75151.1 photosystem II protein K [Lepidium sativum] >QKE47332.1 photosystem II protein K [Lepidium meyenii])

HSP 1 Score: 114 bits (286), Expect = 6.470e-32
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0 
Query:    1 MLNIFNLICICFNSALFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 61
            MLNIFNL+CICFNSALFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR
Sbjct:    1 MLNIFNLVCICFNSALFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 61
[Close]
BLAST of BolSC49t61204H-R vs. GenBank_protein
Match: YP_009356336.1 (photosystem II protein K [Thlaspi arvense] >YP_009539927.1 PSII K protein [Biscutella lyrata] >AQV10466.1 photosystem II protein K [Thlaspi arvense] >AYQ21930.1 PSII K protein [Biscutella lyrata] >QKK50722.1 PSII K protein [Thlaspi arvense])

HSP 1 Score: 114 bits (286), Expect = 6.470e-32
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0 
Query:    1 MLNIFNLICICFNSALFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 61
            MLNIFNLICICFNSALFSSTFLVAKLPEAYAFLNPIVDVMP+IPLFFLLLAFVWQAAVSFR
Sbjct:    1 MLNIFNLICICFNSALFSSTFLVAKLPEAYAFLNPIVDVMPIIPLFFLLLAFVWQAAVSFR 61
[Close]
BLAST of BolSC49t61204H-R vs. GenBank_protein
Match: CZF89854.1 (PSII K protein [Arabidopsis cebennensis])

HSP 1 Score: 114 bits (285), Expect = 9.200e-32
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0 
Query:    1 MLNIFNLICICFNSALFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 61
            MLN+FNLICICFNSALFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR
Sbjct:    1 MLNLFNLICICFNSALFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 61
[Close]
BLAST of BolSC49t61204H-R vs. GenBank_protein
Match: YP_009894781.1 (PSII K protein [Dithyrea californica] >QKK41240.1 PSII K protein [Dithyrea californica])

HSP 1 Score: 114 bits (285), Expect = 9.200e-32
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0 
Query:    1 MLNIFNLICICFNSALFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 61
            MLNIFNLIC+CFNSALFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR
Sbjct:    1 MLNIFNLICLCFNSALFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 61
[Close]
BLAST of BolSC49t61204H-R vs. GenBank_protein
Match: YP_009896078.1 (PSII K protein [Exhalimolobos weddellii] >QKK50114.1 PSII K protein [Savignya parviflora] >QKK50809.1 PSII K protein [Turritis glabra] >QKK51237.1 PSII K protein [Vella lucentina] >QKK42624.1 PSII K protein [Exhalimolobos weddellii] >BBB05445.1 PSII K protein [Turritis glabra])

HSP 1 Score: 114 bits (284), Expect = 1.310e-31
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0 
Query:    1 MLNIFNLICICFNSALFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 61
            MLNIFNLICICFNSALFS+TFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR
Sbjct:    1 MLNIFNLICICFNSALFSNTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 61
[Close]
BLAST of BolSC49t61204H-R vs. GenBank_protein
Match: YP_009932317.1 (PSII K protein [Rhammatophyllum erysimoides] >YP_009932402.1 PSII K protein [Rhammatophyllum gaudanense] >YP_009932487.1 PSII K protein [Rhammatophyllum pachyrhizum] >YP_009932657.1 PSII K protein [Sisymbriopsis mollipila] >YP_009932827.1 PSII K protein [Solms-laubachia calcicola] >YP_009932906.1 PSII K protein [Solms-laubachia himalayensis] >YP_009932991.1 PSII K protein [Solms-laubachia jafrii] >YP_009933076.1 PSII K protein [Solms-laubachia kashgarica] >YP_009933246.1 PSII K protein [Solms-laubachia linearis] >YP_009933331.1 PSII K protein [Solms-laubachia linearifolia] >YP_009933661.1 PSII K protein [Solms-laubachia pulcherrima] >YP_009933746.1 PSII K protein [Solms-laubachia retropilosa] >YP_009933916.1 PSII K protein [Solms-laubachia villosa] >YP_009934000.1 PSII K protein [Solms-laubachia xerophyta] >YP_009934085.1 PSII K protein [Solms-laubachia zhongdianensis] >YP_010009034.1 PSII K protein [Sisymbriopsis pamirica] >YP_010009119.1 PSII K protein [Sisymbriopsis schugnana] >YP_010009204.1 PSII K protein [Solms-laubachia angustifolia] >YP_010009459.1 PSII K protein [Solms-laubachia tianbaoshanensis] >QNR93267.1 PSII K protein [Solms-laubachia minor] >QNR91420.1 PSII K protein [Rhammatophyllum erysimoides] >QNR91505.1 PSII K protein [Rhammatophyllum erysimoides] >QNR91590.1 PSII K protein [Rhammatophyllum gaudanense] >QNR91675.1 PSII K protein [Rhammatophyllum pachyrhizum])

HSP 1 Score: 114 bits (284), Expect = 1.310e-31
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0 
Query:    1 MLNIFNLICICFNSALFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 61
            MLNIFNLICICFN+ALFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR
Sbjct:    1 MLNIFNLICICFNTALFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 61
The following BLAST results are available for this feature:
BLAST of BolSC49t61204H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
YP_001123098.14.550e-32100.00photosystem II protein K [Olimarabidopsis pumila] ... [more]
YP_009342490.16.470e-3298.36photosystem II protein K [Orychophragmus diffusus]... [more]
YP_009931638.16.470e-3298.36PSII K protein [Dilophia salsa] >QKK49592.1 PSII K... [more]
YP_009046897.16.470e-3298.36photosystem II protein [Raphanus sativus] >APW8226... [more]
YP_001123620.16.470e-3298.36photosystem II protein K [Lepidium virginicum] >YP... [more]
YP_009356336.16.470e-3298.36photosystem II protein K [Thlaspi arvense] >YP_009... [more]
CZF89854.19.200e-3298.36PSII K protein [Arabidopsis cebennensis][more]
YP_009894781.19.200e-3298.36PSII K protein [Dithyrea californica] >QKK41240.1 ... [more]
YP_009896078.11.310e-3198.36PSII K protein [Exhalimolobos weddellii] >QKK50114... [more]
YP_009932317.11.310e-3198.36PSII K protein [Rhammatophyllum erysimoides] >YP_0... [more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0009539 photosystem II reaction center
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003687Photosystem II PsbKPFAMPF02533PsbKcoord: 21..61
e-value: 1.8E-24
score: 85.6
IPR003687Photosystem II PsbKPANTHERPTHR35325FAMILY NOT NAMEDcoord: 1..61
IPR003687Photosystem II PsbKHAMAPMF_00441PSII_PsbKcoord: 23..61
score: 18.48222
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..6
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..38
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 7..27
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 39..60
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 61..61
NoneNo IPR availableTMHMMTMhelixcoord: 2..24
NoneNo IPR availableTMHMMTMhelixcoord: 39..58
IPR037270Photosystem II PsbK superfamilySUPERFAMILY161037Photosystem II reaction center protein K, PsbKcoord: 25..61

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Boleracea_scaffold_49contigBoleracea_scaffold_49:144920..145105 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolSC49t61204H-RBolSC49t61204H-RBrassica oleracea HDEMmRNABoleracea_scaffold_49 144920..145105 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolSC49t61204H-R-P ID=BolSC49t61204H-R-P|Name=BolSC49t61204H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=62bp
MLNIFNLICICFNSALFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLL
AFVWQAAVSFR.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
TermDefinition
GO:0009523photosystem II
GO:0009535chloroplast thylakoid membrane
GO:0016021integral component of membrane
GO:0009539photosystem II reaction center
Vocabulary: INTERPRO
TermDefinition
IPR037270PSII_PsbK_sf
IPR003687PSII_PsbK
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis