BolSC47t61120H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolSC47t61120H-R
Unique NameBolSC47t61120H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length39
Homology
BLAST of BolSC47t61120H-R vs. GenBank_protein
Match: VDD65892.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 85.1 bits (209), Expect = 8.130e-21
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0
Query:    1 MIAIRGLKRILMPESWIGWPLRKDYIAPIFMKYKMLIE 38
            MIAIRGLKRILMPESWIGWPLRKDYIAPIFMKYKMLIE
Sbjct:    1 MIAIRGLKRILMPESWIGWPLRKDYIAPIFMKYKMLIE 38          
BLAST of BolSC47t61120H-R vs. GenBank_protein
Match: KAG0538069.1 (hypothetical protein BDA96_03G203500 [Sorghum bicolor])

HSP 1 Score: 69.3 bits (168), Expect = 1.580e-13
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0
Query:    7 LKRILMPESWIGWPLRKDYIAPIFMKYKMLIE 38
            LKRILMPESWIGWPLRKDYI PI MKYKMLIE
Sbjct:  105 LKRILMPESWIGWPLRKDYITPISMKYKMLIE 136          
BLAST of BolSC47t61120H-R vs. GenBank_protein
Match: CAA9893341.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 69.3 bits (168), Expect = 2.610e-13
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0
Query:    7 LKRILMPESWIGWPLRKDYIAPIFMKYKMLIE 38
            LKRILMPESWIGWPLRKDYI PI MKYKMLIE
Sbjct:  128 LKRILMPESWIGWPLRKDYITPISMKYKMLIE 159          
BLAST of BolSC47t61120H-R vs. GenBank_protein
Match: QHN86084.1 (NAD(P)H-quinone oxidoreductase subunit J [Arachis hypogaea])

HSP 1 Score: 69.3 bits (168), Expect = 2.610e-13
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0
Query:    7 LKRILMPESWIGWPLRKDYIAPIFMKYKMLIE 38
            LKRILMPE+WIGWPLRKDYIAPIFMKYKML +
Sbjct:  128 LKRILMPENWIGWPLRKDYIAPIFMKYKMLTK 159          
BLAST of BolSC47t61120H-R vs. GenBank_protein
Match: PVH34240.1 (hypothetical protein PAHAL_8G179000 [Panicum hallii])

HSP 1 Score: 66.6 bits (161), Expect = 1.880e-12
Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = 0
Query:    7 LKRILMPESWIGWPLRKDYIAPIFMKYKMLIE 38
            LKRILMPESWIGWPLRKDYI P  MKYKMLIE
Sbjct:  107 LKRILMPESWIGWPLRKDYITPNSMKYKMLIE 138          
BLAST of BolSC47t61120H-R vs. GenBank_protein
Match: AFK48896.1 (unknown [Lotus japonicus])

HSP 1 Score: 63.9 bits (154), Expect = 5.060e-11
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0
Query:    7 LKRILMPESWIGWPLRKDYIAPIFMKYKMLIE 38
            LKRILMPESWIGWPLRKDYIAP F +YKML +
Sbjct:  150 LKRILMPESWIGWPLRKDYIAPNFYEYKMLTK 181          
BLAST of BolSC47t61120H-R vs. GenBank_protein
Match: YP_009936598.1 (NADH-plastoquinone oxidoreductase subunit J [Paphiopedilum barbigerum] >QNT11225.1 NADH-plastoquinone oxidoreductase subunit J [Paphiopedilum barbigerum] >QUV74528.1 NADH-plastoquinone oxidoreductase subunit J [Paphiopedilum tranlienianum])

HSP 1 Score: 60.1 bits (144), Expect = 2.650e-10
Identity = 28/34 (82.35%), Postives = 29/34 (85.29%), Query Frame = 0
Query:    7 LKRILMPESWIGWPLRKDYIAP--IFMKYKMLIE 38
            LKRILMPE+WIGW LRKDYIAP  I MKYKML E
Sbjct:   63 LKRILMPENWIGWSLRKDYIAPLPISMKYKMLFE 96          
BLAST of BolSC47t61120H-R vs. GenBank_protein
Match: QUV74946.1 (NADH-plastoquinone oxidoreductase subunit J [Paphiopedilum violascens])

HSP 1 Score: 60.1 bits (144), Expect = 4.510e-10
Identity = 28/34 (82.35%), Postives = 29/34 (85.29%), Query Frame = 0
Query:    7 LKRILMPESWIGWPLRKDYIAP--IFMKYKMLIE 38
            LKRILMPE+WIGW LRKDYIAP  I MKYKML E
Sbjct:   86 LKRILMPENWIGWSLRKDYIAPLPISMKYKMLFE 119          
BLAST of BolSC47t61120H-R vs. GenBank_protein
Match: ABY57492.1 (NADH dehydrogenase subunit J, partial [Solanum tuberosum])

HSP 1 Score: 58.9 bits (141), Expect = 1.480e-9
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 0
Query:    7 LKRILMPESWIGWPLRKDYIAPIFMKYKMLI 37
            LKRILMPESWIGWPLRKDYIAP F + ++LI
Sbjct:   96 LKRILMPESWIGWPLRKDYIAPNFYEIQVLI 126          
BLAST of BolSC47t61120H-R vs. GenBank_protein
Match: QUV74779.1 (NADH-plastoquinone oxidoreductase subunit J [Paphiopedilum kolopakingii])

HSP 1 Score: 58.5 bits (140), Expect = 1.770e-9
Identity = 27/34 (79.41%), Postives = 28/34 (82.35%), Query Frame = 0
Query:    7 LKRILMPESWIGWPLRKDYIAP--IFMKYKMLIE 38
            LKRILMPE+WIGW LRKDYI P  I MKYKML E
Sbjct:   85 LKRILMPENWIGWSLRKDYITPLPISMKYKMLFE 118          
The following BLAST results are available for this feature:
BLAST of BolSC47t61120H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
VDD65892.18.130e-21100.00unnamed protein product [Brassica oleracea][more]
KAG0538069.11.580e-1393.75hypothetical protein BDA96_03G203500 [Sorghum bico... [more]
CAA9893341.12.610e-1393.75unnamed protein product [Spirodela intermedia][more]
QHN86084.12.610e-1390.63NAD(P)H-quinone oxidoreductase subunit J [Arachis ... [more]
PVH34240.11.880e-1290.63hypothetical protein PAHAL_8G179000 [Panicum halli... [more]
AFK48896.15.060e-1184.38unknown [Lotus japonicus][more]
YP_009936598.12.650e-1082.35NADH-plastoquinone oxidoreductase subunit J [Paphi... [more]
QUV74946.14.510e-1082.35NADH-plastoquinone oxidoreductase subunit J [Paphi... [more]
ABY57492.11.480e-980.65NADH dehydrogenase subunit J, partial [Solanum tub... [more]
QUV74779.11.770e-979.41NADH-plastoquinone oxidoreductase subunit J [Paphi... [more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001268NADH:ubiquinone oxidoreductase, 30kDa subunitPFAMPF00329Complex1_30kDacoord: 7..26
e-value: 4.5E-5
score: 24.1
IPR037232NADH:ubiquinone oxidoreductase, 30kDa subunit superfamilySUPERFAMILY143243Nqo5-likecoord: 6..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Boleracea_scaffold_47contigBoleracea_scaffold_47:163768..163884 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolSC47t61120H-RBolSC47t61120H-RBrassica oleracea HDEMmRNABoleracea_scaffold_47 163768..163884 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolSC47t61120H-R-P ID=BolSC47t61120H-R-P|Name=BolSC47t61120H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=39bp
MIAIRGLKRILMPESWIGWPLRKDYIAPIFMKYKMLIE.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037232NADH_quin_OxRdtase_su_C/D-like
IPR001268NADH_UbQ_OxRdtase_30kDa_su
Vocabulary: Biological Process
TermDefinition
GO:0022900electron transport chain
Vocabulary: Molecular Function
TermDefinition
GO:0008137NADH dehydrogenase (ubiquinone) activity