BolSC47t61095H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolSC47t61095H-R
Unique NameBolSC47t61095H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length278
Homology
[Close]
BLAST of BolSC47t61095H-R vs. GenBank_protein
Match: VDD65867.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 549 bits (1414), Expect = 6.510e-197
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0 
Query:    1 MQTRNTFSWIREEITRSISVSLMIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEMQEKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQGMRK 277
            MQTRNTFSWIREEITRSISVSLMIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEMQEKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQGMRK
Sbjct:    1 MQTRNTFSWIREEITRSISVSLMIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEMQEKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQGMRK 277
[Close]
BLAST of BolSC47t61095H-R vs. GenBank_protein
Match: YP_009564588.1 (cytochrome f [Brassica oleracea] >AKM97931.1 PetA [Brassica oleracea var. capitata] >ANW83808.1 PetA [Brassica napus var. napus] >ASY94071.1 PetA [Brassica oleracea var. botrytis] >ASY94158.1 PetA [Brassica oleracea var. gongylodes] >ASY94245.1 PetA [Brassica oleracea var. italica])

HSP 1 Score: 543 bits (1399), Expect = 6.140e-194
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0 
Query:    1 MQTRNTFSWIREEITRSISVSLMIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEMQEKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQG 274
            MQTRNTFSWIREEITRSISVSLMIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEMQEKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQG
Sbjct:    1 MQTRNTFSWIREEITRSISVSLMIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEMQEKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQG 274
[Close]
BLAST of BolSC47t61095H-R vs. GenBank_protein
Match: YP_005089965.1 (petA gene product [Brassica napus] >YP_009175688.1 cytochrome f [Eutrema salsugineum] >YP_009177878.1 cytochrome f [Brassica juncea] >YP_009232369.1 cytochrome f [Eutrema halophilum] >YP_009232456.1 cytochrome f [Eutrema botschantzevii] >YP_009259592.1 PetA [Brassica nigra] >YP_009271580.1 cytochrome f [Cakile arabica] >YP_009342520.1 cytochrome f [Orychophragmus diffusus] >YP_009342605.1 cytochrome f [Orychophragmus taibaiensis] >YP_009342690.1 cytochrome f [Orychophragmus hupehensis] >YP_009488426.1 apocytochrome f precursor [Sisymbrium irio] >YP_009553780.1 cytochrome f [Brassica rapa] >YP_009730680.1 PetA [Sinapis alba] >YP_009891011.1 cytochrome f [Arabis josiae] >YP_009893943.1 cytochrome f [Cakile maritima] >YP_009896195.1 cytochrome f [Fourraea alpina] >YP_009899022.1 cytochrome f [Mostacillastrum orbignyanum] >YP_009899792.1 cytochrome f [Noccaea caerulescens] >YP_009900046.1 cytochrome f [Ochthodium aegyptiacum] >YP_009900219.1 cytochrome f [Orychophragmus violaceus] >YP_009907374.1 PetA [Brassica rapa subsp. rapa] >P36438.1 RecName: Full=Cytochrome f; Flags: Precursor [Brassica rapa subsp. rapa] >ANW83290.1 PetA [Brassica napus var. napus] >APS85264.1 cytochrome f [Orychophragmus longisiliquus] >ASY93462.1 PetA [Brassica rapa subsp. chinensis] >ASY93549.1 PetA [Brassica rapa subsp. pekinensis] >ASY94680.1 PetA [Brassica juncea subsp. integrifolia] >ASY95376.1 PetA [Brassica carinata] >KAG5383800.1 hypothetical protein IGI04_035270 [Brassica rapa subsp. trilocularis] >QJF59751.1 cytochrome f [Cakile edentula] >QJF60360.1 cytochrome f [Cakile edentula subsp. harperi] >QJF60708.1 cytochrome f [Cakile edentula subsp. lacustris] >QJF65319.1 cytochrome f [Cakile lanceolata subsp. lanceolata] >QJF65403.1 cytochrome f [Cakile lanceolata subsp. fusiformis] >QJF65490.1 cytochrome f [Cakile lanceolata] >QJF66273.1 cytochrome f [Cakile maritima subsp. euxina] >QJF66969.1 cytochrome f [Cakile maritima subsp. baltica] >QKK47373.1 cytochrome f [Parodiodoxa chionophila] >QKK50057.1 cytochrome f [Sisymbrium officinale] >QKK52135.1 cytochrome f [Neuontobotrys berningeri] >QKK52309.1 cytochrome f [Pseudofortuynia leucoclada] >QOP63778.1 cytochrome f [Eruca vesicaria subsp. sativa] >QUI76305.1 cytochrome f [Moricandia arvensis])

HSP 1 Score: 541 bits (1395), Expect = 2.500e-193
Identity = 273/274 (99.64%), Postives = 274/274 (100.00%), Query Frame = 0 
Query:    1 MQTRNTFSWIREEITRSISVSLMIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEMQEKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQG 274
            MQTRNTFSWIREEITRSISVSLMIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEM+EKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQG
Sbjct:    1 MQTRNTFSWIREEITRSISVSLMIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEMKEKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQG 274
[Close]
BLAST of BolSC47t61095H-R vs. GenBank_protein
Match: QKK49014.1 (cytochrome f [Sisymbrium altissimum] >QTC32573.1 apocytochrome f precursor [Sisymbrium altissimum])

HSP 1 Score: 541 bits (1394), Expect = 3.550e-193
Identity = 272/274 (99.27%), Postives = 274/274 (100.00%), Query Frame = 0 
Query:    1 MQTRNTFSWIREEITRSISVSLMIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEMQEKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQG 274
            MQTRNTFSWIREEITRSISVSLMIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEM+EKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKD+HFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQG
Sbjct:    1 MQTRNTFSWIREEITRSISVSLMIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEMKEKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDIHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQG 274
[Close]
BLAST of BolSC47t61095H-R vs. GenBank_protein
Match: YP_009896282.1 (cytochrome f [Guiraoa arvensis] >QKK42828.1 cytochrome f [Guiraoa arvensis])

HSP 1 Score: 541 bits (1394), Expect = 3.550e-193
Identity = 272/274 (99.27%), Postives = 274/274 (100.00%), Query Frame = 0 
Query:    1 MQTRNTFSWIREEITRSISVSLMIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEMQEKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQG 274
            MQTRNTFSWIREEITRSISVSLMIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEM+EKIGNLSFQNYRPNKKNILV+GPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQG
Sbjct:    1 MQTRNTFSWIREEITRSISVSLMIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEMKEKIGNLSFQNYRPNKKNILVVGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQG 274
[Close]
BLAST of BolSC47t61095H-R vs. GenBank_protein
Match: QKK49796.1 (cytochrome f [Sarcodraba karraikensis])

HSP 1 Score: 540 bits (1392), Expect = 7.160e-193
Identity = 272/274 (99.27%), Postives = 274/274 (100.00%), Query Frame = 0 
Query:    1 MQTRNTFSWIREEITRSISVSLMIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEMQEKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQG 274
            MQT+NTFSWIREEITRSISVSLMIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEM+EKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQG
Sbjct:    1 MQTKNTFSWIREEITRSISVSLMIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEMKEKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQG 274
[Close]
BLAST of BolSC47t61095H-R vs. GenBank_protein
Match: YP_009192801.1 (cytochrome f [Eutrema yunnanense] >YP_009192888.1 cytochrome f [Eutrema heterophyllum] >BBN90946.1 cytochrome f [Eutrema japonicum] >BBN91532.1 cytochrome f [Eutrema tenue] >ALP73232.1 cytochrome f [Eutrema yunnanense] >ALP73312.1 cytochrome f [Eutrema heterophyllum] >BBN91032.1 cytochrome f [Eutrema japonicum])

HSP 1 Score: 540 bits (1392), Expect = 7.160e-193
Identity = 272/274 (99.27%), Postives = 274/274 (100.00%), Query Frame = 0 
Query:    1 MQTRNTFSWIREEITRSISVSLMIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEMQEKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQG 274
            MQTRNTFSWIREEITRSISVSLMIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEM+EKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVID+IPRGLELLVSEGESIKLDQPLTSNPNVGGFGQG
Sbjct:    1 MQTRNTFSWIREEITRSISVSLMIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEMKEKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDMIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQG 274
[Close]
BLAST of BolSC47t61095H-R vs. GenBank_protein
Match: YP_009179743.1 (cytochrome f [Isatis tinctoria] >YP_009894378.1 cytochrome f [Conringia planisiliqua] >YP_009899278.1 cytochrome f [Myagrum perfoliatum] >QKK49274.1 cytochrome f [Schimpera arabica] >ALL45416.1 cytochrome f [Isatis tinctoria] >ANT45679.1 cytochrome f [Isatis tinctoria] >QKK40750.1 cytochrome f [Conringia planisiliqua] >QKK40837.1 cytochrome f [Conringia planisiliqua])

HSP 1 Score: 540 bits (1391), Expect = 1.020e-192
Identity = 272/274 (99.27%), Postives = 274/274 (100.00%), Query Frame = 0 
Query:    1 MQTRNTFSWIREEITRSISVSLMIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEMQEKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQG 274
            MQTRNTFSWIREEITRSISVSLMIYII+WASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEM+EKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQG
Sbjct:    1 MQTRNTFSWIREEITRSISVSLMIYIISWASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEMKEKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQG 274
[Close]
BLAST of BolSC47t61095H-R vs. GenBank_protein
Match: QKK44362.1 (cytochrome f [Isatis tinctoria])

HSP 1 Score: 540 bits (1391), Expect = 1.020e-192
Identity = 272/274 (99.27%), Postives = 274/274 (100.00%), Query Frame = 0 
Query:    1 MQTRNTFSWIREEITRSISVSLMIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEMQEKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQG 274
            MQTRNTFSWIREEITRSISVSLMIYII+WASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEM+EKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQG
Sbjct:    1 MQTRNTFSWIREEITRSISVSLMIYIISWASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEMKEKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQG 274
[Close]
BLAST of BolSC47t61095H-R vs. GenBank_protein
Match: APS85094.1 (cytochrome f [Orychophragmus zhongtiaoshanus])

HSP 1 Score: 540 bits (1391), Expect = 1.020e-192
Identity = 272/274 (99.27%), Postives = 273/274 (99.64%), Query Frame = 0 
Query:    1 MQTRNTFSWIREEITRSISVSLMIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEMQEKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQG 274
            MQTRNTFSWIREEITRSISVSLMIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEM+EKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNAT GGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQG
Sbjct:    1 MQTRNTFSWIREEITRSISVSLMIYIITWASISSAYPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEMKEKIGNLSFQNYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATTGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQG 274
The following BLAST results are available for this feature:
BLAST of BolSC47t61095H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
VDD65867.16.510e-197100.00unnamed protein product [Brassica oleracea][more]
YP_009564588.16.140e-194100.00cytochrome f [Brassica oleracea] >AKM97931.1 PetA ... [more]
YP_005089965.12.500e-19399.64petA gene product [Brassica napus] >YP_009175688.1... [more]
QKK49014.13.550e-19399.27cytochrome f [Sisymbrium altissimum] >QTC32573.1 a... [more]
YP_009896282.13.550e-19399.27cytochrome f [Guiraoa arvensis] >QKK42828.1 cytoch... [more]
QKK49796.17.160e-19399.27cytochrome f [Sarcodraba karraikensis][more]
YP_009192801.17.160e-19399.27cytochrome f [Eutrema yunnanense] >YP_009192888.1 ... [more]
YP_009179743.11.020e-19299.27cytochrome f [Isatis tinctoria] >YP_009894378.1 cy... [more]
QKK44362.11.020e-19299.27cytochrome f [Isatis tinctoria][more]
APS85094.11.020e-19299.27cytochrome f [Orychophragmus zhongtiaoshanus][more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
biological_process GO:0015979 photosynthesis
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0031361 integral component of thylakoid membrane
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002325Cytochrome fPRINTSPR00610CYTOCHROMEFcoord: 238..258
score: 66.05
coord: 44..63
score: 90.22
coord: 189..212
score: 80.62
coord: 168..188
score: 77.64
coord: 85..104
score: 78.26
coord: 259..277
score: 66.67
coord: 31..42
score: 75.72
coord: 105..125
score: 88.82
coord: 64..84
score: 89.03
coord: 126..146
score: 62.53
coord: 147..167
score: 74.95
IPR002325Cytochrome fPFAMPF01333Apocytochr_F_Ccoord: 202..274
e-value: 1.2E-21
score: 77.0
IPR002325Cytochrome fPROSITEPS51010CYTFcoord: 35..277
score: 98.435478
IPR036826Cytochrome f large domain superfamilyGENE3D2.60.40.830Cytochrome f large domaincoord: 36..277
e-value: 1.9E-102
score: 343.0
IPR036826Cytochrome f large domain superfamilySUPERFAMILY49441Cytochrome f, large domaincoord: 36..274
IPR024094Cytochrome f large domainPFAMPF16639Apocytochr_F_Ncoord: 36..190
e-value: 6.4E-79
score: 263.6
NoneNo IPR availableGENE3D2.40.50.100coord: 206..264
e-value: 2.5E-24
score: 87.1
NoneNo IPR availablePANTHERPTHR33288:SF9CYTOCHROME Fcoord: 1..274
NoneNo IPR availablePANTHERPTHR33288FAMILY NOT NAMEDcoord: 1..274
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 40..277
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..39
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..19
NoneNo IPR availableTMHMMTMhelixcoord: 17..39
IPR011054Rudiment single hybrid motifSUPERFAMILY51246Rudiment single hybrid motifcoord: 203..265

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Boleracea_scaffold_47contigBoleracea_scaffold_47:108582..109415 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolSC47t61095H-RBolSC47t61095H-RBrassica oleracea HDEMmRNABoleracea_scaffold_47 108582..109415 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolSC47t61095H-R-P ID=BolSC47t61095H-R-P|Name=BolSC47t61095H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=278bp
MQTRNTFSWIREEITRSISVSLMIYIITWASISSAYPIFAQQNYENPREA
TGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANGK
KGALNVGAVLILPEGFELAPPDRISPEMQEKIGNLSFQNYRPNKKNILVI
GPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSK
SNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLV
SEGESIKLDQPLTSNPNVGGFGQGMRK.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011054Rudment_hybrid_motif
IPR024094Cyt_f_lg_dom
IPR036826Cyt_f_lg_dom_sf
IPR002325Cyt_f
Vocabulary: Biological Process
TermDefinition
GO:0022900electron transport chain
GO:0015979photosynthesis
Vocabulary: Molecular Function
TermDefinition
GO:0020037heme binding
GO:0009055electron transfer activity
GO:0005506iron ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0031361integral component of thylakoid membrane
GO:0009535chloroplast thylakoid membrane