BolC9t60045H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolC9t60045H-R
Unique NameBolC9t60045H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length159
Homology
BLAST of BolC9t60045H-R vs. GenBank_protein
Match: VDD34722.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 311 bits (797), Expect = 8.470e-107
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0
Query:    1 MLLLSLTLVILFHCSMYWLSARVIWMVGTRRTRHKLRRRRGLFITLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQAFNRRSININQQAQAPRLRRDLSPTNHCGMLLFFKPASDLEASCVQIRSSLVYFHFPHTIK 158
            MLLLSLTLVILFHCSMYWLSARVIWMVGTRRTRHKLRRRRGLFITLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQAFNRRSININQQAQAPRLRRDLSPTNHCGMLLFFKPASDLEASCVQIRSSLVYFHFPHTIK
Sbjct:    1 MLLLSLTLVILFHCSMYWLSARVIWMVGTRRTRHKLRRRRGLFITLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQAFNRRSININQQAQAPRLRRDLSPTNHCGMLLFFKPASDLEASCVQIRSSLVYFHFPHTIK 158          
BLAST of BolC9t60045H-R vs. GenBank_protein
Match: CAF1791905.1 (unnamed protein product, partial [Brassica napus])

HSP 1 Score: 305 bits (782), Expect = 1.790e-103
Identity = 155/158 (98.10%), Postives = 156/158 (98.73%), Query Frame = 0
Query:    1 MLLLSLTLVILFHCSMYWLSARVIWMVGTRRTRHKLRRRRGLFITLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQAFNRRSININQQAQAPRLRRDLSPTNHCGMLLFFKPASDLEASCVQIRSSLVYFHFPHTIK 158
            MLLLSLTLVILFHCSMYWLSARVIWMVGTRRTR KLRRRRGLF+TLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQAFNRRSININQQAQAPRLRRDLSPTNHCGMLLFFKPASDLEASCVQIRSS VYFHFPHTIK
Sbjct:    1 MLLLSLTLVILFHCSMYWLSARVIWMVGTRRTRQKLRRRRGLFVTLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQAFNRRSININQQAQAPRLRRDLSPTNHCGMLLFFKPASDLEASCVQIRSSSVYFHFPHTIK 158          
BLAST of BolC9t60045H-R vs. GenBank_protein
Match: KAF3505192.1 (hypothetical protein F2Q69_00045709 [Brassica cretica])

HSP 1 Score: 184 bits (468), Expect = 2.120e-55
Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = 0
Query:    2 LLLSLTLVILFHCSMYWLSARVIWMVGTRRTRHKLRRRRGLFITLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQA 98
            LLLSLTLV+LFHCSMYWLSARVIWMVGTRRTR KLRRRRGLF+TLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQA
Sbjct:   35 LLLSLTLVVLFHCSMYWLSARVIWMVGTRRTRQKLRRRRGLFVTLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQA 131          
BLAST of BolC9t60045H-R vs. GenBank_protein
Match: KAF2575630.1 (hypothetical protein F2Q70_00006760 [Brassica cretica])

HSP 1 Score: 184 bits (468), Expect = 4.070e-54
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 0
Query:    1 MLLLSLTLVILFHCSMYWLSARVIWMVGTRRTRHKLRRRRGLFITLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQA 98
            MLLLSLTLV+LFHCSMYWLSARVIWMVGTRRTR KLRRRRGLF+TL LVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQA
Sbjct:   28 MLLLSLTLVVLFHCSMYWLSARVIWMVGTRRTRQKLRRRRGLFVTLFLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQA 125          
BLAST of BolC9t60045H-R vs. GenBank_protein
Match: KAF3563584.1 (hypothetical protein DY000_02019852 [Brassica cretica])

HSP 1 Score: 184 bits (468), Expect = 4.070e-54
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 0
Query:    1 MLLLSLTLVILFHCSMYWLSARVIWMVGTRRTRHKLRRRRGLFITLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQA 98
            MLLLSLTLV+LFHCSMYWLSARVIWMVGTRRTR KLRRRRGLF+TL LVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQA
Sbjct:   28 MLLLSLTLVVLFHCSMYWLSARVIWMVGTRRTRQKLRRRRGLFVTLFLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQA 125          
BLAST of BolC9t60045H-R vs. GenBank_protein
Match: KAF2536127.1 (hypothetical protein F2Q68_00023429 [Brassica cretica])

HSP 1 Score: 184 bits (468), Expect = 4.070e-54
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 0
Query:    1 MLLLSLTLVILFHCSMYWLSARVIWMVGTRRTRHKLRRRRGLFITLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQA 98
            MLLLSLTLV+LFHCSMYWLSARVIWMVGTRRTR KLRRRRGLF+TL LVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQA
Sbjct:   28 MLLLSLTLVVLFHCSMYWLSARVIWMVGTRRTRQKLRRRRGLFVTLFLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQA 125          
BLAST of BolC9t60045H-R vs. GenBank_protein
Match: AAZ67609.1 (80A08_24 [Brassica rapa subsp. pekinensis])

HSP 1 Score: 129 bits (324), Expect = 5.920e-32
Identity = 71/97 (73.20%), Postives = 76/97 (78.35%), Query Frame = 0
Query:    2 LLLSLTLVILFHCSMYWLSARVIWMVGTRRTRHKLRRRRGLFITLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQA 98
            LL+SL LV+LFHCSMY L ARV WMVG RRTR  LRRRRGLF+ LL VVLS +L+F PAMSREDS A AI RS  S  DV  SVRRQTSH VHYVQA
Sbjct:   85 LLVSLALVVLFHCSMYCLFARVNWMVGGRRTRQTLRRRRGLFVVLLPVVLSFRLIFTPAMSREDSLATAILRSSDSKADVSPSVRRQTSHSVHYVQA 181          
BLAST of BolC9t60045H-R vs. GenBank_protein
Match: KAF3597001.1 (hypothetical protein DY000_02025994 [Brassica cretica])

HSP 1 Score: 124 bits (311), Expect = 7.140e-32
Identity = 67/97 (69.07%), Postives = 76/97 (78.35%), Query Frame = 0
Query:    2 LLLSLTLVILFHCSMYWLSARVIWMVGTRRTRHKLRRRRGLFITLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQA 98
            LLLS TLV++FHCSMY   ARVIW+VG RRTR  +RRRRGLF+ LL VVLS +L+F PAMSREDS A A+ RS  S   V  SVRRQTSH+VHYVQA
Sbjct:   47 LLLSFTLVVMFHCSMYCSFARVIWIVGGRRTRQTVRRRRGLFVVLLPVVLSFRLIFTPAMSREDSLATAMLRSSDSKAGVSPSVRRQTSHNVHYVQA 143          
BLAST of BolC9t60045H-R vs. GenBank_protein
Match: KAG2262001.1 (hypothetical protein Bca52824_069080 [Brassica carinata])

HSP 1 Score: 125 bits (315), Expect = 3.830e-31
Identity = 64/83 (77.11%), Postives = 69/83 (83.13%), Query Frame = 0
Query:   16 MYWLSARVIWMVGTRRTRHKLRRRRGLFITLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQA 98
            M WLS+RVIWMVG R+TR  LRRRRGLF+ LLLV+L CQLVFPP +SREDS A AIRRSLGSNPDV  SVRR TSH V YVQA
Sbjct:    1 MCWLSSRVIWMVGGRQTRQTLRRRRGLFVALLLVILPCQLVFPPEISREDSLAPAIRRSLGSNPDVPYSVRRLTSHSVLYVQA 83          
BLAST of BolC9t60045H-R vs. GenBank_protein
Match: KAF2603622.1 (hypothetical protein F2Q70_00024740 [Brassica cretica])

HSP 1 Score: 122 bits (305), Expect = 7.070e-29
Identity = 69/97 (71.13%), Postives = 73/97 (75.26%), Query Frame = 0
Query:    4 LSLTLVILFHCSMYWLSARVIWMVGTRRTRHKLRRRRGLFITLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSS--VRRQTSHDVHYVQA 98
            LSL LV+LFHCSMY L ARV WMVG RRTR  LRRRRGLF+ LL VVLS +L+F PAMSREDS A AI RS  S  DV  S  VR QTSH VHYVQA
Sbjct:  204 LSLALVVLFHCSMYCLIARVNWMVGGRRTRQTLRRRRGLFVALLPVVLSFRLIFTPAMSREDSLATAILRSSDSKADVSPSLSVRHQTSHSVHYVQA 300          
The following BLAST results are available for this feature:
BLAST of BolC9t60045H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
VDD34722.18.470e-107100.00unnamed protein product [Brassica oleracea][more]
CAF1791905.11.790e-10398.10unnamed protein product, partial [Brassica napus][more]
KAF3505192.12.120e-5596.91hypothetical protein F2Q69_00045709 [Brassica cret... [more]
KAF2575630.14.070e-5495.92hypothetical protein F2Q70_00006760 [Brassica cret... [more]
KAF3563584.14.070e-5495.92hypothetical protein DY000_02019852 [Brassica cret... [more]
KAF2536127.14.070e-5495.92hypothetical protein F2Q68_00023429 [Brassica cret... [more]
AAZ67609.15.920e-3273.2080A08_24 [Brassica rapa subsp. pekinensis][more]
KAF3597001.17.140e-3269.07hypothetical protein DY000_02025994 [Brassica cret... [more]
KAG2262001.13.830e-3177.11hypothetical protein Bca52824_069080 [Brassica car... [more]
KAF2603622.17.070e-2971.13hypothetical protein F2Q70_00024740 [Brassica cret... [more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 58..158
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 40..57
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 29..39
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..28
NoneNo IPR availableTMHMMTMhelixcoord: 39..61
NoneNo IPR availableTMHMMTMhelixcoord: 4..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C9contigC9:62258456..62258932 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC9t60045H-RBolC9t60045H-RBrassica oleracea HDEMmRNAC9 62258456..62258932 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolC9t60045H-R-P ID=BolC9t60045H-R-P|Name=BolC9t60045H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=159bp
MLLLSLTLVILFHCSMYWLSARVIWMVGTRRTRHKLRRRRGLFITLLLVV
LSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQAFN
RRSININQQAQAPRLRRDLSPTNHCGMLLFFKPASDLEASCVQIRSSLVY
FHFPHTIK.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane