BolC9t60045H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	BolC9t60045H-R
Unique Name	BolC9t60045H-R-P
Type	polypeptide
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length	159

Homology

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BLAST of BolC9t60045H-R vs. GenBank_protein
Match: VDD34722.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 311 bits (797), Expect = 8.470e-107
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0

Query:    1 MLLLSLTLVILFHCSMYWLSARVIWMVGTRRTRHKLRRRRGLFITLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQAFNRRSININQQAQAPRLRRDLSPTNHCGMLLFFKPASDLEASCVQIRSSLVYFHFPHTIK 158
            MLLLSLTLVILFHCSMYWLSARVIWMVGTRRTRHKLRRRRGLFITLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQAFNRRSININQQAQAPRLRRDLSPTNHCGMLLFFKPASDLEASCVQIRSSLVYFHFPHTIK
Sbjct:    1 MLLLSLTLVILFHCSMYWLSARVIWMVGTRRTRHKLRRRRGLFITLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQAFNRRSININQQAQAPRLRRDLSPTNHCGMLLFFKPASDLEASCVQIRSSLVYFHFPHTIK 158

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BLAST of BolC9t60045H-R vs. GenBank_protein
Match: CAF1791905.1 (unnamed protein product, partial [Brassica napus])

HSP 1 Score: 305 bits (782), Expect = 1.790e-103
Identity = 155/158 (98.10%), Postives = 156/158 (98.73%), Query Frame = 0

Query:    1 MLLLSLTLVILFHCSMYWLSARVIWMVGTRRTRHKLRRRRGLFITLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQAFNRRSININQQAQAPRLRRDLSPTNHCGMLLFFKPASDLEASCVQIRSSLVYFHFPHTIK 158
            MLLLSLTLVILFHCSMYWLSARVIWMVGTRRTR KLRRRRGLF+TLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQAFNRRSININQQAQAPRLRRDLSPTNHCGMLLFFKPASDLEASCVQIRSS VYFHFPHTIK
Sbjct:    1 MLLLSLTLVILFHCSMYWLSARVIWMVGTRRTRQKLRRRRGLFVTLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQAFNRRSININQQAQAPRLRRDLSPTNHCGMLLFFKPASDLEASCVQIRSSSVYFHFPHTIK 158

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BLAST of BolC9t60045H-R vs. GenBank_protein
Match: KAF3505192.1 (hypothetical protein F2Q69_00045709 [Brassica cretica])

HSP 1 Score: 184 bits (468), Expect = 2.120e-55
Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = 0

Query:    2 LLLSLTLVILFHCSMYWLSARVIWMVGTRRTRHKLRRRRGLFITLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQA 98
            LLLSLTLV+LFHCSMYWLSARVIWMVGTRRTR KLRRRRGLF+TLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQA
Sbjct:   35 LLLSLTLVVLFHCSMYWLSARVIWMVGTRRTRQKLRRRRGLFVTLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQA 131

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BLAST of BolC9t60045H-R vs. GenBank_protein
Match: KAF2575630.1 (hypothetical protein F2Q70_00006760 [Brassica cretica])

HSP 1 Score: 184 bits (468), Expect = 4.070e-54
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 0

Query:    1 MLLLSLTLVILFHCSMYWLSARVIWMVGTRRTRHKLRRRRGLFITLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQA 98
            MLLLSLTLV+LFHCSMYWLSARVIWMVGTRRTR KLRRRRGLF+TL LVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQA
Sbjct:   28 MLLLSLTLVVLFHCSMYWLSARVIWMVGTRRTRQKLRRRRGLFVTLFLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQA 125

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BLAST of BolC9t60045H-R vs. GenBank_protein
Match: KAF3563584.1 (hypothetical protein DY000_02019852 [Brassica cretica])

HSP 1 Score: 184 bits (468), Expect = 4.070e-54
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 0

Query:    1 MLLLSLTLVILFHCSMYWLSARVIWMVGTRRTRHKLRRRRGLFITLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQA 98
            MLLLSLTLV+LFHCSMYWLSARVIWMVGTRRTR KLRRRRGLF+TL LVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQA
Sbjct:   28 MLLLSLTLVVLFHCSMYWLSARVIWMVGTRRTRQKLRRRRGLFVTLFLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQA 125

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BLAST of BolC9t60045H-R vs. GenBank_protein
Match: KAF2536127.1 (hypothetical protein F2Q68_00023429 [Brassica cretica])

HSP 1 Score: 184 bits (468), Expect = 4.070e-54
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 0

Query:    1 MLLLSLTLVILFHCSMYWLSARVIWMVGTRRTRHKLRRRRGLFITLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQA 98
            MLLLSLTLV+LFHCSMYWLSARVIWMVGTRRTR KLRRRRGLF+TL LVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQA
Sbjct:   28 MLLLSLTLVVLFHCSMYWLSARVIWMVGTRRTRQKLRRRRGLFVTLFLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQA 125

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BLAST of BolC9t60045H-R vs. GenBank_protein
Match: AAZ67609.1 (80A08_24 [Brassica rapa subsp. pekinensis])

HSP 1 Score: 129 bits (324), Expect = 5.920e-32
Identity = 71/97 (73.20%), Postives = 76/97 (78.35%), Query Frame = 0

Query:    2 LLLSLTLVILFHCSMYWLSARVIWMVGTRRTRHKLRRRRGLFITLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQA 98
            LL+SL LV+LFHCSMY L ARV WMVG RRTR  LRRRRGLF+ LL VVLS +L+F PAMSREDS A AI RS  S  DV  SVRRQTSH VHYVQA
Sbjct:   85 LLVSLALVVLFHCSMYCLFARVNWMVGGRRTRQTLRRRRGLFVVLLPVVLSFRLIFTPAMSREDSLATAILRSSDSKADVSPSVRRQTSHSVHYVQA 181

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BLAST of BolC9t60045H-R vs. GenBank_protein
Match: KAF3597001.1 (hypothetical protein DY000_02025994 [Brassica cretica])

HSP 1 Score: 124 bits (311), Expect = 7.140e-32
Identity = 67/97 (69.07%), Postives = 76/97 (78.35%), Query Frame = 0

Query:    2 LLLSLTLVILFHCSMYWLSARVIWMVGTRRTRHKLRRRRGLFITLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQA 98
            LLLS TLV++FHCSMY   ARVIW+VG RRTR  +RRRRGLF+ LL VVLS +L+F PAMSREDS A A+ RS  S   V  SVRRQTSH+VHYVQA
Sbjct:   47 LLLSFTLVVMFHCSMYCSFARVIWIVGGRRTRQTVRRRRGLFVVLLPVVLSFRLIFTPAMSREDSLATAMLRSSDSKAGVSPSVRRQTSHNVHYVQA 143

[Close]

BLAST of BolC9t60045H-R vs. GenBank_protein
Match: KAG2262001.1 (hypothetical protein Bca52824_069080 [Brassica carinata])

HSP 1 Score: 125 bits (315), Expect = 3.830e-31
Identity = 64/83 (77.11%), Postives = 69/83 (83.13%), Query Frame = 0

Query:   16 MYWLSARVIWMVGTRRTRHKLRRRRGLFITLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQA 98
            M WLS+RVIWMVG R+TR  LRRRRGLF+ LLLV+L CQLVFPP +SREDS A AIRRSLGSNPDV  SVRR TSH V YVQA
Sbjct:    1 MCWLSSRVIWMVGGRQTRQTLRRRRGLFVALLLVILPCQLVFPPEISREDSLAPAIRRSLGSNPDVPYSVRRLTSHSVLYVQA 83

[Close]

BLAST of BolC9t60045H-R vs. GenBank_protein
Match: KAF2603622.1 (hypothetical protein F2Q70_00024740 [Brassica cretica])

HSP 1 Score: 122 bits (305), Expect = 7.070e-29
Identity = 69/97 (71.13%), Postives = 73/97 (75.26%), Query Frame = 0

Query:    4 LSLTLVILFHCSMYWLSARVIWMVGTRRTRHKLRRRRGLFITLLLVVLSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSS--VRRQTSHDVHYVQA 98
            LSL LV+LFHCSMY L ARV WMVG RRTR  LRRRRGLF+ LL VVLS +L+F PAMSREDS A AI RS  S  DV  S  VR QTSH VHYVQA
Sbjct:  204 LSLALVVLFHCSMYCLIARVNWMVGGRRTRQTLRRRRGLFVALLPVVLSFRLIFTPAMSREDSLATAILRSSDSKADVSPSLSVRHQTSHSVHYVQA 300

The following BLAST results are available for this feature:

BLAST of BolC9t60045H-R vs. GenBank_protein

BLAST of BolC9t60045H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
VDD34722.1	8.470e-107	100.00	unnamed protein product [Brassica oleracea]	[more]
CAF1791905.1	1.790e-103	98.10	unnamed protein product, partial [Brassica napus]	[more]
KAF3505192.1	2.120e-55	96.91	hypothetical protein F2Q69_00045709 [Brassica cret...	[more]
KAF2575630.1	4.070e-54	95.92	hypothetical protein F2Q70_00006760 [Brassica cret...	[more]
KAF3563584.1	4.070e-54	95.92	hypothetical protein DY000_02019852 [Brassica cret...	[more]
KAF2536127.1	4.070e-54	95.92	hypothetical protein F2Q68_00023429 [Brassica cret...	[more]
AAZ67609.1	5.920e-32	73.20	80A08_24 [Brassica rapa subsp. pekinensis]	[more]
KAF3597001.1	7.140e-32	69.07	hypothetical protein DY000_02025994 [Brassica cret...	[more]
KAG2262001.1	3.830e-31	77.11	hypothetical protein Bca52824_069080 [Brassica car...	[more]
KAF2603622.1	7.070e-29	71.13	hypothetical protein F2Q70_00024740 [Brassica cret...	[more]

Pages

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 58..158
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 40..57
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 29..39
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..28
None	No IPR available	TMHMM	TMhelix		coord: 39..61
None	No IPR available	TMHMM	TMhelix		coord: 4..26

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C9	contig	C9:62258456..62258932 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
Interproscan on OGS1.0	2022-03-19
Blast2go on OGS1.0	2022-03-19
Diamond on OGS1.0 vs NR	2022-03-19
Brassica oleracea HDEM OGS1.0	2018-11-02

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC9t60045H-R	BolC9t60045H-R	Brassica oleracea HDEM	mRNA	C9 62258456..62258932 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>BolC9t60045H-R-P ID=BolC9t60045H-R-P|Name=BolC9t60045H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=159bp
MLLLSLTLVILFHCSMYWLSARVIWMVGTRRTRHKLRRRRGLFITLLLVV
LSCQLVFPPAMSREDSFAAAIRRSLGSNPDVLSSVRRQTSHDVHYVQAFN
RRSININQQAQAPRLRRDLSPTNHCGMLLFFKPASDLEASCVQIRSSLVY
FHFPHTIK.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Orthology

View orthology data for BolC9t60045H-R-P