BolC9t59955H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolC9t59955H-R
Unique NameBolC9t59955H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length475
Homology
[Close]
BLAST of BolC9t59955H-R vs. GenBank_protein
Match: VDD34632.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 927 bits (2395), Expect = 0.000e+0
Identity = 474/474 (100.00%), Postives = 474/474 (100.00%), Query Frame = 0 
Query:    1 MASSQWTRSEDKMFEHALVLFPEGSPNRWEIIADQLQKSAGEVREHYEALVHDVIEIESGRVHVPRYMDDSAVQISFESKHGESERKRGTPWSESEHKLFLVGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDTSLAMHGSNMDWNGQHDSPVQPQQQQIMSEFDGSASDELKASFPQVSALGSMIVWTSFTPSSATSCQTRFPALTSPPVLSHAFFADLRVIPLSTRSIRNRVYASINNIDVATPSHQDADPEATIVQLSFGDRLGALIDTMRALKDFGLGVTKGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIINNLLKYHPECSDQLAMGESFGIKAPQKKIDVDIATHIHVKEDGPKRSLLCIETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNSSLSQVLVNCLRYFLRRPETDIDSY 474
            MASSQWTRSEDKMFEHALVLFPEGSPNRWEIIADQLQKSAGEVREHYEALVHDVIEIESGRVHVPRYMDDSAVQISFESKHGESERKRGTPWSESEHKLFLVGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDTSLAMHGSNMDWNGQHDSPVQPQQQQIMSEFDGSASDELKASFPQVSALGSMIVWTSFTPSSATSCQTRFPALTSPPVLSHAFFADLRVIPLSTRSIRNRVYASINNIDVATPSHQDADPEATIVQLSFGDRLGALIDTMRALKDFGLGVTKGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIINNLLKYHPECSDQLAMGESFGIKAPQKKIDVDIATHIHVKEDGPKRSLLCIETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNSSLSQVLVNCLRYFLRRPETDIDSY
Sbjct:    1 MASSQWTRSEDKMFEHALVLFPEGSPNRWEIIADQLQKSAGEVREHYEALVHDVIEIESGRVHVPRYMDDSAVQISFESKHGESERKRGTPWSESEHKLFLVGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDTSLAMHGSNMDWNGQHDSPVQPQQQQIMSEFDGSASDELKASFPQVSALGSMIVWTSFTPSSATSCQTRFPALTSPPVLSHAFFADLRVIPLSTRSIRNRVYASINNIDVATPSHQDADPEATIVQLSFGDRLGALIDTMRALKDFGLGVTKGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIINNLLKYHPECSDQLAMGESFGIKAPQKKIDVDIATHIHVKEDGPKRSLLCIETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNSSLSQVLVNCLRYFLRRPETDIDSY 474
[Close]
BLAST of BolC9t59955H-R vs. GenBank_protein
Match: CDY44877.1 (BnaC09g50770D [Brassica napus])

HSP 1 Score: 860 bits (2223), Expect = 6.450e-314
Identity = 448/474 (94.51%), Postives = 450/474 (94.94%), Query Frame = 0 
Query:    1 MASSQWTRSEDKMFEHALVLFPEGSPNRWEIIADQLQKSAGEVREHYEALVHDVIEIESGRVHVPRYMDDSAVQISFESKHGESERKRGTPWSESEHKLFLVGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDTSLAMHGSNMDWNGQHDSPVQPQQQQIMSEFDGSASDELKASFPQVSALGSMIVWTSFTPSSATSCQTRFPALTSPPVLSHAFFADLRVIPLSTRSIRNRVYASINNIDVATPSHQDADPEATIVQLSFGDRLGALIDTMRALKDFGLGVTKGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIINNLLKYHPECSDQLAMGESFGIKAPQKKIDVDIATHIHVKEDGPKRSLLCIETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNSSLSQVLVNCLRYFLRRPETDIDSY 474
            MASSQWT+                      IIADQLQKSAGEVREHYEALVHDVIEIESGRVHVP YMDDSAVQISFESKHGE+ERKRGTPWSESEHKLFLVGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNS KKERKRSSIHDITTVDTSLAMHGSNMDWNGQHDSPVQPQQQQIMSEFDGSASDELKASFPQVSALGSMIVWTSFTPSSATSCQTRFPALTSPPVLSHAFFADLRVIPLSTRSIRNRVYASINNIDVATPSHQDADPEATIVQLSFGDRLGALIDTMRALKDFGLGVTKGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIINNLLKYHPECSDQLAMGESFGIKAPQKKIDVDIATHIHVKEDGPKRSLLCIETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNSSLSQVLVNCLRYFLRRPETDIDSY
Sbjct:    1 MASSQWTK----------------------IIADQLQKSAGEVREHYEALVHDVIEIESGRVHVPHYMDDSAVQISFESKHGENERKRGTPWSESEHKLFLVGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSGKKERKRSSIHDITTVDTSLAMHGSNMDWNGQHDSPVQPQQQQIMSEFDGSASDELKASFPQVSALGSMIVWTSFTPSSATSCQTRFPALTSPPVLSHAFFADLRVIPLSTRSIRNRVYASINNIDVATPSHQDADPEATIVQLSFGDRLGALIDTMRALKDFGLGVTKGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIINNLLKYHPECSDQLAMGESFGIKAPQKKIDVDIATHIHVKEDGPKRSLLCIETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNSSLSQVLVNCLRYFLRRPETDIDSY 452
[Close]
BLAST of BolC9t59955H-R vs. GenBank_protein
Match: VDD21048.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 817 bits (2110), Expect = 5.740e-296
Identity = 435/498 (87.35%), Postives = 447/498 (89.76%), Query Frame = 0 
Query:    1 MASSQWTRSEDKMFEHALVLFPEGSPNRWEIIADQLQKSAGEVREHYEALVHDVIEIESGRVHVPRYMDDSAVQISFESKHGESERKRGTPWSESEHKLFLVGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDTSLAMHGSNMDWNGQHDSPVQPQQQQ---IMSEFDGSASDELKASFPQVSALGSMIVWTSFTPSSATSCQTRFPALTSPPVLSHAFFADLRVIPLSTR-SIRNRVYASINNIDVATPSHQ--------------------DADPEATIVQLSFGDRLGALIDTMRALKDFGLGVTKGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIINNLLKYHPECSDQLAMGESFGIKAPQKKIDVDIATHIHVKEDGPKRSLLCIETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNSSLSQVLVNCLRYFLRRPETDIDSY 474
            MASSQWTRSEDKMFEHALVLFPEG PNRWEIIADQLQKSAGEV+EHYEALVHDVIEI+SGRVHVP YMDDSA QISFESKHGE+ERKRGTPWSESEHKLFLVGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDTSLAMHGSNMDWNGQ  SPVQPQQQQ   IMSEF+G       +S    + + S+    SFTPSSATSCQTRFPALTSPP L+ AFFADLRVIPLSTR SIRNRVYASINNIDVATPSHQ                    DADPEATIVQLSFGDRLGALIDTMRALKD GL V KGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIINNLLKYHPECSDQLAMGE+FGIKAP+KKIDVDIATHIHVKEDGPKRSLLCIETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNSSL+QVLVNCLRYFLRRPETDIDSY
Sbjct:    1 MASSQWTRSEDKMFEHALVLFPEGPPNRWEIIADQLQKSAGEVKEHYEALVHDVIEIDSGRVHVPYYMDDSAGQISFESKHGENERKRGTPWSESEHKLFLVGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDTSLAMHGSNMDWNGQQGSPVQPQQQQQQQIMSEFEGRIC-VFDSSMALSNTIFSVSHLASFTPSSATSCQTRFPALTSPPDLTPAFFADLRVIPLSTRRSIRNRVYASINNIDVATPSHQKMEDDXXXXFVPMPMVLIDQDADPEATIVQLSFGDRLGALIDTMRALKDLGLDVIKGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIINNLLKYHPECSDQLAMGETFGIKAPEKKIDVDIATHIHVKEDGPKRSLLCIETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNSSLAQVLVNCLRYFLRRPETDIDSY 497
[Close]
BLAST of BolC9t59955H-R vs. GenBank_protein
Match: CAF2360503.1 (unnamed protein product, partial [Brassica napus])

HSP 1 Score: 749 bits (1935), Expect = 7.080e-269
Identity = 416/518 (80.31%), Postives = 425/518 (82.05%), Query Frame = 0 
Query:    1 MASSQWTRSEDKMFEHALVLFPEGSPNRWEIIADQLQKSAGEVREHYEALVHDVIEIESGRVHVPRYMDDSAVQISFESKHGESERKRGTPWSESEHKLFLVGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDTSLAMHGSNMDWNGQHDSPVQPQQQ---QIMSEFDGSA--------------------SDELKASFPQVSALGSMIVWTSFTPSSATSCQTRFPALTSPPVLSHAFFADLRVIPLSTR-SIRNRVYASINNIDVATPSHQ--------------------DADPEATIVQLSFGDRLGALIDTMRALKDFGLGVTKGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIINNLLKYHPECSDQLAMGESFGIKAPQKKIDVDIATHIHVKEDGPKRSLLCIETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNSSLSQVLVNCLRYFLRRPETDIDSY 474
            MA+SQWTRSEDKMFEHALVLFPEGSPNRWEIIADQLQKSAGEVREHYEALVHDVIEI+SGRVHVPRYMDDSA QISFESKHGE+ERKRGTPWSESEHKLFLVGLKRYGKGDWRSISRNVV             KYFLRQNS KKERKRSSIHDITTVDTSLAMHGSNMDWNGQ  SPVQPQQQ   QIMSEFDGS                      D L ++F  +          SF         +R  ALTSPP LS AFFADLRVIPLSTR SIRNRVYASINNIDVATPSHQ                    DADPEATIVQLSFGDRLGALIDTMRALKD GL V KGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIINNLLKYHPECSDQLAMGE+FGIKAP+KKIDVDIATHIHVKEDGPKRSLLCIETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNSSLSQVLVNCLRYFLRRPETDIDSY
Sbjct:   23 MAASQWTRSEDKMFEHALVLFPEGSPNRWEIIADQLQKSAGEVREHYEALVHDVIEIDSGRVHVPRYMDDSAGQISFESKHGENERKRGTPWSESEHKLFLVGLKRYGKGDWRSISRNVV-------------KYFLRQNSGKKERKRSSIHDITTVDTSLAMHGSNMDWNGQQGSPVQPQQQXXQQIMSEFDGSVLVMNSRLLFLRFLLEDDGMMQDYLPSTFWLLLLKFLHPFLYSFFRHQLPDSLSR--ALTSPPDLSPAFFADLRVIPLSTRRSIRNRVYASINNIDVATPSHQKMEDDXXXXXVPMPMVLIDQDADPEATIVQLSFGDRLGALIDTMRALKDLGLDVIKGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIINNLLKYHPECSDQLAMGETFGIKAPEKKIDVDIATHIHVKEDGPKRSLLCIETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNSSLSQVLVNCLRYFLRRPETDIDSY 525
[Close]
BLAST of BolC9t59955H-R vs. GenBank_protein
Match: KAG5377380.1 (hypothetical protein IGI04_041976 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 720 bits (1858), Expect = 3.120e-258
Identity = 398/496 (80.24%), Postives = 408/496 (82.26%), Query Frame = 0 
Query:    1 MASSQWTRSEDKMFEHALVLFPEGSPNRWEIIADQLQKSAGEVREHYEALVHDVIEIESGRVHVPRYMDDSAVQISFESKHGESERKRGTPWSESEHKLFLVGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDTSLAMHGSNMDWNGQHDSPVQPQQQQIMSEFDGSASDELKASFPQVSALGSMIVWTSFTPSSATSCQTRFPALTSPPVLSHAFFADLRVIPLSTR-SIRNRVYASINNIDVATPSHQ---------------------DADPEATIVQLSFGDRLGALIDTMRALKDFGLGVTKGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIINNLLKYHPECSDQLAMGESFGIKAPQKKIDVDIATHIHVKEDGPKRSLLCIETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNSSLSQVLVNCLRYFLRRPETDIDSY 474
            M SSQWTRSEDKMFEHALVLFPEGSPNRWEIIADQLQKSAGEV+EHYEALVHDVIEIESGRVHVP YMDDSA QISFESKHGE+ERKRGTPWSESEHKLFLVGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNS+                T  A+ G                  + +  FD S +  L  +   VS L S      FTPSSATSCQTRFPALTSPP LS AFFADLRVIPLSTR SIRNRVYASINNIDVATPSHQ                     DADPEATIVQLSFGDRLG LIDTMRALKD GL V KGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIINNLLKYHPECSDQLAMGE+FGIKAP+KKIDVDIATHIHVKEDGPKRSLLCIETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNSSLSQVLVNCLRYFLRRPETDIDSY
Sbjct:    1 MESSQWTRSEDKMFEHALVLFPEGSPNRWEIIADQLQKSAGEVKEHYEALVHDVIEIESGRVHVPHYMDDSAGQISFESKHGENERKRGTPWSESEHKLFLVGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSI----------------TFPALSGFCCS--------------RRICVFDSSMA--LSNTIFSVSHLAS------FTPSSATSCQTRFPALTSPPDLSPAFFADLRVIPLSTRRSIRNRVYASINNIDVATPSHQKMEDDXXXXXFVPMPMVLIDQDADPEATIVQLSFGDRLGDLIDTMRALKDLGLDVIKGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIINNLLKYHPECSDQLAMGETFGIKAPEKKIDVDIATHIHVKEDGPKRSLLCIETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNSSLSQVLVNCLRYFLRRPETDIDSY 458
[Close]
BLAST of BolC9t59955H-R vs. GenBank_protein
Match: CAF1791059.1 (unnamed protein product, partial [Brassica napus])

HSP 1 Score: 551 bits (1421), Expect = 1.620e-194
Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0 
Query:  190 DGSASDELKASFPQVSALGSMIVWTSFTPSSATSCQTRFPALTSPPVLSHAFFADLRVIPLSTRSIRNRVYASINNIDVATPSHQDADPEATIVQLSFGDRLGALIDTMRALKDFGLGVTKGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIINNLLKYHPECSDQLAMGESFGIKAPQKKIDVDIATHIHVKEDGPKRSLLCIETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNSSLSQVLVNCLRYFLRRPETDIDSY 474
            DGSASDELKASFPQVSALGSMIVWTSFTPSSATSCQTRFPALTSPPVLSHAFFADLRVIPLSTRSIRNRVYASINNIDVATPSHQDADPEATIVQLSFGDRLGALIDTMRALKDFGLGVTKGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIINNLLKYHPECSDQLAMGESFGIKAPQKKIDVDIATHIHVKEDGPKRSLLCIETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNSSLSQVLVNCLRYFLRRPETDIDSY
Sbjct:    1 DGSASDELKASFPQVSALGSMIVWTSFTPSSATSCQTRFPALTSPPVLSHAFFADLRVIPLSTRSIRNRVYASINNIDVATPSHQDADPEATIVQLSFGDRLGALIDTMRALKDFGLGVTKGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIINNLLKYHPECSDQLAMGESFGIKAPQKKIDVDIATHIHVKEDGPKRSLLCIETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNSSLSQVLVNCLRYFLRRPETDIDSY 285
[Close]
BLAST of BolC9t59955H-R vs. GenBank_protein
Match: XP_033137790.1 (ACT domain-containing protein ACR12 isoform X2 [Brassica rapa])

HSP 1 Score: 475 bits (1223), Expect = 2.800e-164
Identity = 251/280 (89.64%), Postives = 255/280 (91.07%), Query Frame = 0 
Query:  215 SFTPSSATSCQTRFPALTSPPVLSHAFFADLRVIPLSTRSIRNRVYASINNIDVATPSHQ--------------------DADPEATIVQLSFGDRLGALIDTMRALKDFGLGVTKGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIINNLLKYHPECSDQLAMGESFGIKAPQKKIDVDIATHIHVKEDGPKRSLLCIETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNSSLSQVLVNCLRYFLRRPETDIDSY 474
            SFTPSSATSCQTRFPALTSPP L+ AFFADLRVIPLSTRSIRNRVYASINNIDVATPSHQ                    DADPEATIVQLSFGDRLGALIDTMRALKD GL V KGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIINNLLKYHPECSDQLAMGE+FGIKAP+KKIDVDIATHIHVKEDGPKRSLLCIETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNSSL+QVLVNCLRYFLRRPETDIDSY
Sbjct:   15 SFTPSSATSCQTRFPALTSPPDLTPAFFADLRVIPLSTRSIRNRVYASINNIDVATPSHQKMEDDXXXXFVPMPMVLIDQDADPEATIVQLSFGDRLGALIDTMRALKDLGLDVIKGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIINNLLKYHPECSDQLAMGETFGIKAPEKKIDVDIATHIHVKEDGPKRSLLCIETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNSSLAQVLVNCLRYFLRRPETDIDSY 294
[Close]
BLAST of BolC9t59955H-R vs. GenBank_protein
Match: XP_009122573.1 (ACT domain-containing protein ACR12 isoform X1 [Brassica rapa] >XP_022549373.1 ACT domain-containing protein ACR12 [Brassica napus])

HSP 1 Score: 471 bits (1211), Expect = 1.930e-162
Identity = 251/281 (89.32%), Postives = 255/281 (90.75%), Query Frame = 0 
Query:  215 SFTPSSATSCQTRFPALTSPPVLSHAFFADLRVIPLSTR-SIRNRVYASINNIDVATPSHQ--------------------DADPEATIVQLSFGDRLGALIDTMRALKDFGLGVTKGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIINNLLKYHPECSDQLAMGESFGIKAPQKKIDVDIATHIHVKEDGPKRSLLCIETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNSSLSQVLVNCLRYFLRRPETDIDSY 474
            SFTPSSATSCQTRFPALTSPP L+ AFFADLRVIPLSTR SIRNRVYASINNIDVATPSHQ                    DADPEATIVQLSFGDRLGALIDTMRALKD GL V KGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIINNLLKYHPECSDQLAMGE+FGIKAP+KKIDVDIATHIHVKEDGPKRSLLCIETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNSSL+QVLVNCLRYFLRRPETDIDSY
Sbjct:   15 SFTPSSATSCQTRFPALTSPPDLTPAFFADLRVIPLSTRRSIRNRVYASINNIDVATPSHQKMEDDXXXXFVPMPMVLIDQDADPEATIVQLSFGDRLGALIDTMRALKDLGLDVIKGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIINNLLKYHPECSDQLAMGETFGIKAPEKKIDVDIATHIHVKEDGPKRSLLCIETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNSSLAQVLVNCLRYFLRRPETDIDSY 295
[Close]
BLAST of BolC9t59955H-R vs. GenBank_protein
Match: RID42861.1 (hypothetical protein BRARA_J02718 [Brassica rapa])

HSP 1 Score: 469 bits (1206), Expect = 1.150e-161
Identity = 251/282 (89.01%), Postives = 254/282 (90.07%), Query Frame = 0 
Query:  215 SFTPSSATSCQTRFPALTSPPVLSHAFFADLRVIPLSTR-SIRNRVYASINNIDVATPSHQ---------------------DADPEATIVQLSFGDRLGALIDTMRALKDFGLGVTKGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIINNLLKYHPECSDQLAMGESFGIKAPQKKIDVDIATHIHVKEDGPKRSLLCIETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNSSLSQVLVNCLRYFLRRPETDIDSY 474
            SFTPSSATSCQTRFPALTSPP L+ AFFADLRVIPLSTR SIRNRVYASINNIDVATPSHQ                     DADPEATIVQLSFGDRLGALIDTMRALKD GL V KGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIINNLLKYHPECSDQLAMGE+FGIKAP+KKIDVDIATHIHVKEDGPKRSLLCIETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNSSLSQVLVNCLRYFLRRPETDI SY
Sbjct:   15 SFTPSSATSCQTRFPALTSPPDLTPAFFADLRVIPLSTRRSIRNRVYASINNIDVATPSHQKMEDDXXXXXFVPMPMVLIDQDADPEATIVQLSFGDRLGALIDTMRALKDLGLDVIKGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIINNLLKYHPECSDQLAMGETFGIKAPEKKIDVDIATHIHVKEDGPKRSLLCIETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNSSLSQVLVNCLRYFLRRPETDIHSY 296
[Close]
BLAST of BolC9t59955H-R vs. GenBank_protein
Match: KAF2538370.1 (hypothetical protein F2Q68_00023355 [Brassica cretica])

HSP 1 Score: 456 bits (1173), Expect = 1.330e-155
Identity = 246/284 (86.62%), Postives = 249/284 (87.68%), Query Frame = 0 
Query:  211 IVWTSFTPSSATSCQTRFPALTSPPVLSHAFFADLRVIPLSTRSIRNRVYASINNIDVATPSHQ--------------------DADPEATIVQLSFGDRLGALIDTMRALKDFGLGVTKGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIINNLLKYHPECSDQLAMGESFGIKAPQKKIDVDIATHIHVKEDGPKRSLLCIETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNSSLSQVLVNCLRYFLRRPETDIDSY 474
            IVWTSFTPSSATSCQTRFPALTSPPVLSHAFFADLRVIPLSTRSIRNRV ASINNIDVATPSHQ                    DADPEATIVQLSFGDRLGALIDTMRALKDFGLGVTKGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIINNLLKYHPECSDQLAMGE+FGIKAPQKK++V   T           SLLCIETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNSSLSQVLVNCLRYFLRRPETDIDSY
Sbjct:   92 IVWTSFTPSSATSCQTRFPALTSPPVLSHAFFADLRVIPLSTRSIRNRVCASINNIDVATPSHQKSQDDXXXXFVPMPMVLIDQDADPEATIVQLSFGDRLGALIDTMRALKDFGLGVTKGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIINNLLKYHPECSDQLAMGETFGIKAPQKKVNVYYTT-----------SLLCIETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNSSLSQVLVNCLRYFLRRPETDIDSY 364
The following BLAST results are available for this feature:
BLAST of BolC9t59955H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
VDD34632.10.000e+0100.00unnamed protein product [Brassica oleracea][more]
CDY44877.16.450e-31494.51BnaC09g50770D [Brassica napus][more]
VDD21048.15.740e-29687.35unnamed protein product [Brassica rapa][more]
CAF2360503.17.080e-26980.31unnamed protein product, partial [Brassica napus][more]
KAG5377380.13.120e-25880.24hypothetical protein IGI04_041976 [Brassica rapa s... [more]
CAF1791059.11.620e-194100.00unnamed protein product, partial [Brassica napus][more]
XP_033137790.12.800e-16489.64ACT domain-containing protein ACR12 isoform X2 [Br... [more]
XP_009122573.11.930e-16289.32ACT domain-containing protein ACR12 isoform X1 [Br... [more]
RID42861.11.150e-16189.01hypothetical protein BRARA_J02718 [Brassica rapa][more]
KAF2538370.11.330e-15586.62hypothetical protein F2Q68_00023355 [Brassica cret... [more]

Pages

back to top
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 2..53
e-value: 4.3E-7
score: 39.6
coord: 88..138
e-value: 7.7E-11
score: 52.0
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 84..136
score: 7.398506
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 1..51
score: 6.829499
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 6..51
e-value: 1.24225E-5
score: 40.2514
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 91..136
e-value: 7.54869E-10
score: 52.1926
IPR006447Myb domain, plantsTIGRFAMTIGR01557TIGR01557coord: 87..139
e-value: 2.1E-15
score: 54.8
NoneNo IPR availableGENE3D1.10.10.60coord: 1..64
e-value: 7.2E-17
score: 62.9
NoneNo IPR availableGENE3D1.10.10.60coord: 90..142
e-value: 1.5E-15
score: 59.2
NoneNo IPR availablePANTHERPTHR31096:SF75BNAA03G01400D PROTEINcoord: 273..474
NoneNo IPR availableCDDcd04873ACT_UUR-ACR-likecoord: 396..461
e-value: 3.63298E-8
score: 48.3133
IPR017930Myb domainPFAMPF00249Myb_DNA-bindingcoord: 91..135
e-value: 3.2E-11
score: 43.2
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 84..140
score: 17.28186
IPR040217ACT domain-containing protein ACR1-12PANTHERPTHR31096ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATEDcoord: 273..474
IPR002912ACT domainPROSITEPS51671ACTcoord: 397..474
score: 9.001828
IPR017884SANT domainPROSITEPS51293SANTcoord: 87..140
score: 11.17121
IPR045865ACT-like domainSUPERFAMILY55021ACT-likecoord: 395..450
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 86..141
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 4..59

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C9contigC9:61673624..61677619 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC9t59955H-RBolC9t59955H-RBrassica oleracea HDEMmRNAC9 61673624..61677619 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolC9t59955H-R-P ID=BolC9t59955H-R-P|Name=BolC9t59955H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=475bp
MASSQWTRSEDKMFEHALVLFPEGSPNRWEIIADQLQKSAGEVREHYEAL
VHDVIEIESGRVHVPRYMDDSAVQISFESKHGESERKRGTPWSESEHKLF
LVGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSS
IHDITTVDTSLAMHGSNMDWNGQHDSPVQPQQQQIMSEFDGSASDELKAS
FPQVSALGSMIVWTSFTPSSATSCQTRFPALTSPPVLSHAFFADLRVIPL
STRSIRNRVYASINNIDVATPSHQDADPEATIVQLSFGDRLGALIDTMRA
LKDFGLGVTKGTVSTEGSVKQTKFSITKLDTGRKVEDPDSLEQIRLTIIN
NLLKYHPECSDQLAMGESFGIKAPQKKIDVDIATHIHVKEDGPKRSLLCI
ETADRPGLVVEMIKVMADINIDVESAEIDTEGLVAKDKFHVSYQGQALNS
SLSQVLVNCLRYFLRRPETDIDSY.
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeobox-like_sf
IPR045865ACT-like_dom_sf
IPR017884SANT_dom
IPR002912ACT_dom
IPR040217ACR1-12
IPR017930Myb_dom
IPR006447Myb_dom_plants
IPR001005SANT/Myb
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0009570chloroplast stroma
GO:0009535chloroplast thylakoid membrane
GO:0005634nucleus