BolC9t59939H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolC9t59939H-R
Unique NameBolC9t59939H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length187
Homology
BLAST of BolC9t59939H-R vs. GenBank_protein
Match: VDD34616.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 375 bits (962), Expect = 4.880e-131
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0
Query:    1 MASSFWNIAYQQATKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRIISKIVKFSLVYINCESSDALLSSERLSVQMLCSQVKFW 186
            MASSFWNIAYQQATKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRIISKIVKFSLVYINCESSDALLSSERLSVQMLCSQVKFW
Sbjct:    1 MASSFWNIAYQQATKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRIISKIVKFSLVYINCESSDALLSSERLSVQMLCSQVKFW 186          
BLAST of BolC9t59939H-R vs. GenBank_protein
Match: CAF2360244.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 348 bits (894), Expect = 1.140e-120
Identity = 170/186 (91.40%), Postives = 178/186 (95.70%), Query Frame = 0
Query:    1 MASSFWNIAYQQATKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRIISKIVKFSLVYINCESSDALLSSERLSVQMLCSQVKFW 186
            MASSFWNIAYQQA +SGV VAKVYSFLH+TTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISK SRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVV PGKNDESRTIVVPKGHVWVEGDY QNSRDSR FGPVPY L+QGR+LWR+ISKIVKFSLV+INCESS+ALLSSERLSVQ LCSQV+FW
Sbjct:    1 MASSFWNIAYQQAMRSGVFVAKVYSFLHITTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKPSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVGPGKNDESRTIVVPKGHVWVEGDYIQNSRDSRIFGPVPYGLIQGRVLWRVISKIVKFSLVHINCESSEALLSSERLSVQNLCSQVRFW 186          
BLAST of BolC9t59939H-R vs. GenBank_protein
Match: XP_022566966.1 (mitochondrial inner membrane protease subunit 1 [Brassica napus] >CAF1790885.1 unnamed protein product [Brassica napus])

HSP 1 Score: 300 bits (768), Expect = 7.190e-102
Identity = 146/148 (98.65%), Postives = 147/148 (99.32%), Query Frame = 0
Query:    1 MASSFWNIAYQQATKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRI 148
            MASSFWNIAYQQA KSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWR+
Sbjct:    1 MASSFWNIAYQQAMKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRV 148          
BLAST of BolC9t59939H-R vs. GenBank_protein
Match: XP_013611938.1 (PREDICTED: mitochondrial inner membrane protease subunit 1-like [Brassica oleracea var. oleracea])

HSP 1 Score: 298 bits (764), Expect = 3.360e-101
Identity = 144/148 (97.30%), Postives = 147/148 (99.32%), Query Frame = 0
Query:    1 MASSFWNIAYQQATKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRI 148
            MASSFWNIAYQQATKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKL+RGDV+V QSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWR+
Sbjct:    1 MASSFWNIAYQQATKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLTRGDVIVLQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRV 148          
BLAST of BolC9t59939H-R vs. GenBank_protein
Match: KAF3501871.1 (hypothetical protein F2Q69_00045583 [Brassica cretica])

HSP 1 Score: 299 bits (766), Expect = 3.820e-101
Identity = 146/154 (94.81%), Postives = 149/154 (96.75%), Query Frame = 0
Query:    1 MASSFWNIAYQQATKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRIISKIVK 154
            MASSFWNIAYQQA KSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDV+V QSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWR++   VK
Sbjct:    1 MASSFWNIAYQQAMKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVIVLQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRMLCSQVK 154          
BLAST of BolC9t59939H-R vs. GenBank_protein
Match: XP_009122556.1 (mitochondrial inner membrane protease subunit 1 [Brassica rapa])

HSP 1 Score: 293 bits (750), Expect = 4.570e-99
Identity = 142/148 (95.95%), Postives = 144/148 (97.30%), Query Frame = 0
Query:    1 MASSFWNIAYQQATKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRI 148
            MASSFWNIAYQQA KSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISK SRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDY QNSRDSRSFGPVPY L+QGRLLWR+
Sbjct:    1 MASSFWNIAYQQAMKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKPSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYIQNSRDSRSFGPVPYGLIQGRLLWRV 148          
BLAST of BolC9t59939H-R vs. GenBank_protein
Match: RID42847.1 (hypothetical protein BRARA_J02704 [Brassica rapa])

HSP 1 Score: 290 bits (741), Expect = 1.080e-97
Identity = 141/148 (95.27%), Postives = 143/148 (96.62%), Query Frame = 0
Query:    1 MASSFWNIAYQQATKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRI 148
            MASSFWNIAYQQA KSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISK SRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVV PGKNDESRTIVVPKGHVWVEGDY QNSRDSR FGPVPYAL+QGRLLWR+
Sbjct:    1 MASSFWNIAYQQAMKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKPSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVGPGKNDESRTIVVPKGHVWVEGDYIQNSRDSRIFGPVPYALIQGRLLWRV 148          
BLAST of BolC9t59939H-R vs. GenBank_protein
Match: XP_013715719.1 (mitochondrial inner membrane protease subunit 1-like [Brassica napus] >VDD21015.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 284 bits (727), Expect = 1.460e-95
Identity = 137/148 (92.57%), Postives = 141/148 (95.27%), Query Frame = 0
Query:    1 MASSFWNIAYQQATKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRI 148
            MASSFWNIAYQQA +SGV VAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISK SRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVV PGKNDESRTIVVPKGHVWVEGDY QNSRDSR FGPVPY L+QGR+LWR+
Sbjct:    1 MASSFWNIAYQQAMRSGVFVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKPSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVGPGKNDESRTIVVPKGHVWVEGDYIQNSRDSRIFGPVPYGLIQGRVLWRV 148          
BLAST of BolC9t59939H-R vs. GenBank_protein
Match: KAF2536502.1 (hypothetical protein F2Q68_00023322 [Brassica cretica] >KAF2571675.1 hypothetical protein F2Q70_00006653 [Brassica cretica])

HSP 1 Score: 270 bits (691), Expect = 2.870e-90
Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0
Query:   15 KSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRI 148
            KSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKN ESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYAL+QGRLLWR+
Sbjct:    2 KSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNHESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALIQGRLLWRV 135          
BLAST of BolC9t59939H-R vs. GenBank_protein
Match: XP_013593759.1 (PREDICTED: mitochondrial inner membrane protease subunit 1 isoform X1 [Brassica oleracea var. oleracea])

HSP 1 Score: 266 bits (679), Expect = 7.030e-88
Identity = 126/161 (78.26%), Postives = 143/161 (88.82%), Query Frame = 0
Query:    2 ASSFWNIAYQQATKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERIS----KLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRIISKIVKFSLV 158
            +SSFWN+AY+QA KSGV VAKVYSFLHVTT YLAFPA+AFGPSMIPTLHPSGNVVLAERIS    KLSRGDV+V QSPEDPNK+P KRV+GLEGD VSFVVDP KNDESRT+VVPKGHVWV+GDYTQNSRDSR FGP+PY L++GR+LWR+   +  +SL+
Sbjct:    4 SSSFWNVAYRQAMKSGVFVAKVYSFLHVTTTYLAFPAFAFGPSMIPTLHPSGNVVLAERISTRSRKLSRGDVIVLQSPEDPNKIPIKRVIGLEGDCVSFVVDPEKNDESRTVVVPKGHVWVQGDYTQNSRDSRIFGPLPYGLIRGRVLWRVCICLTLYSLI 164          
The following BLAST results are available for this feature:
BLAST of BolC9t59939H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
VDD34616.14.880e-131100.00unnamed protein product [Brassica oleracea][more]
CAF2360244.11.140e-12091.40unnamed protein product [Brassica napus][more]
XP_022566966.17.190e-10298.65mitochondrial inner membrane protease subunit 1 [B... [more]
XP_013611938.13.360e-10197.30PREDICTED: mitochondrial inner membrane protease s... [more]
KAF3501871.13.820e-10194.81hypothetical protein F2Q69_00045583 [Brassica cret... [more]
XP_009122556.14.570e-9995.95mitochondrial inner membrane protease subunit 1 [B... [more]
RID42847.11.080e-9795.27hypothetical protein BRARA_J02704 [Brassica rapa][more]
XP_013715719.11.460e-9592.57mitochondrial inner membrane protease subunit 1-li... [more]
KAF2536502.12.870e-9097.76hypothetical protein F2Q68_00023322 [Brassica cret... [more]
XP_013593759.17.030e-8878.26PREDICTED: mitochondrial inner membrane protease s... [more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
biological_process GO:0006465 signal peptide processing
cellular_component GO:0016020 membrane
molecular_function GO:0004252 serine-type endopeptidase activity
molecular_function GO:0008236 serine-type peptidase activity
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000223Peptidase S26A, signal peptidase IPRINTSPR00727LEADERPTASEcoord: 111..130
score: 51.79
coord: 82..94
score: 50.55
coord: 33..49
score: 36.69
IPR000223Peptidase S26A, signal peptidase ITIGRFAMTIGR02227TIGR02227coord: 27..96
e-value: 2.6E-13
score: 48.1
IPR019533Peptidase S26PFAMPF10502Peptidase_S26coord: 21..96
e-value: 2.8E-12
score: 46.9
coord: 106..145
e-value: 1.1E-7
score: 32.0
IPR019533Peptidase S26CDDcd06530S26_SPase_Icoord: 42..143
e-value: 1.50716E-23
score: 87.2559
NoneNo IPR availableGENE3D2.10.109.10Umud Fragment, subunit Acoord: 31..158
e-value: 2.4E-26
score: 94.2
NoneNo IPR availablePANTHERPTHR12383PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATEDcoord: 3..150
NoneNo IPR availablePANTHERPTHR12383:SF30PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEINcoord: 3..150
IPR036286LexA/Signal peptidase-like superfamilySUPERFAMILY51306LexA/Signal peptidasecoord: 33..150

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C9contigC9:61587433..61588462 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC9t59939H-RBolC9t59939H-RBrassica oleracea HDEMmRNAC9 61587433..61588462 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolC9t59939H-R-P ID=BolC9t59939H-R-P|Name=BolC9t59939H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=187bp
MASSFWNIAYQQATKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLH
PSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDP
GKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRIIS
KIVKFSLVYINCESSDALLSSERLSVQMLCSQVKFW.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
TermDefinition
GO:0008236serine-type peptidase activity
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO:0006465signal peptide processing
Vocabulary: INTERPRO
TermDefinition
IPR036286LexA/Signal_pep-like_sf
IPR019533Peptidase_S26
IPR000223Pept_S26A_signal_pept_1
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane