BolC9t59939H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	BolC9t59939H-R
Unique Name	BolC9t59939H-R-P
Type	polypeptide
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length	187

Homology

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BLAST of BolC9t59939H-R vs. GenBank_protein
Match: VDD34616.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 375 bits (962), Expect = 4.880e-131
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0

Query:    1 MASSFWNIAYQQATKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRIISKIVKFSLVYINCESSDALLSSERLSVQMLCSQVKFW 186
            MASSFWNIAYQQATKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRIISKIVKFSLVYINCESSDALLSSERLSVQMLCSQVKFW
Sbjct:    1 MASSFWNIAYQQATKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRIISKIVKFSLVYINCESSDALLSSERLSVQMLCSQVKFW 186

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BLAST of BolC9t59939H-R vs. GenBank_protein
Match: CAF2360244.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 348 bits (894), Expect = 1.140e-120
Identity = 170/186 (91.40%), Postives = 178/186 (95.70%), Query Frame = 0

Query:    1 MASSFWNIAYQQATKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRIISKIVKFSLVYINCESSDALLSSERLSVQMLCSQVKFW 186
            MASSFWNIAYQQA +SGV VAKVYSFLH+TTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISK SRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVV PGKNDESRTIVVPKGHVWVEGDY QNSRDSR FGPVPY L+QGR+LWR+ISKIVKFSLV+INCESS+ALLSSERLSVQ LCSQV+FW
Sbjct:    1 MASSFWNIAYQQAMRSGVFVAKVYSFLHITTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKPSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVGPGKNDESRTIVVPKGHVWVEGDYIQNSRDSRIFGPVPYGLIQGRVLWRVISKIVKFSLVHINCESSEALLSSERLSVQNLCSQVRFW 186

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BLAST of BolC9t59939H-R vs. GenBank_protein
Match: XP_022566966.1 (mitochondrial inner membrane protease subunit 1 [Brassica napus] >CAF1790885.1 unnamed protein product [Brassica napus])

HSP 1 Score: 300 bits (768), Expect = 7.190e-102
Identity = 146/148 (98.65%), Postives = 147/148 (99.32%), Query Frame = 0

Query:    1 MASSFWNIAYQQATKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRI 148
            MASSFWNIAYQQA KSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWR+
Sbjct:    1 MASSFWNIAYQQAMKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRV 148

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BLAST of BolC9t59939H-R vs. GenBank_protein
Match: XP_013611938.1 (PREDICTED: mitochondrial inner membrane protease subunit 1-like [Brassica oleracea var. oleracea])

HSP 1 Score: 298 bits (764), Expect = 3.360e-101
Identity = 144/148 (97.30%), Postives = 147/148 (99.32%), Query Frame = 0

Query:    1 MASSFWNIAYQQATKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRI 148
            MASSFWNIAYQQATKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKL+RGDV+V QSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWR+
Sbjct:    1 MASSFWNIAYQQATKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLTRGDVIVLQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRV 148

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BLAST of BolC9t59939H-R vs. GenBank_protein
Match: KAF3501871.1 (hypothetical protein F2Q69_00045583 [Brassica cretica])

HSP 1 Score: 299 bits (766), Expect = 3.820e-101
Identity = 146/154 (94.81%), Postives = 149/154 (96.75%), Query Frame = 0

Query:    1 MASSFWNIAYQQATKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRIISKIVK 154
            MASSFWNIAYQQA KSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDV+V QSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWR++   VK
Sbjct:    1 MASSFWNIAYQQAMKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVIVLQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRMLCSQVK 154

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BLAST of BolC9t59939H-R vs. GenBank_protein
Match: XP_009122556.1 (mitochondrial inner membrane protease subunit 1 [Brassica rapa])

HSP 1 Score: 293 bits (750), Expect = 4.570e-99
Identity = 142/148 (95.95%), Postives = 144/148 (97.30%), Query Frame = 0

Query:    1 MASSFWNIAYQQATKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRI 148
            MASSFWNIAYQQA KSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISK SRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDY QNSRDSRSFGPVPY L+QGRLLWR+
Sbjct:    1 MASSFWNIAYQQAMKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKPSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYIQNSRDSRSFGPVPYGLIQGRLLWRV 148

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BLAST of BolC9t59939H-R vs. GenBank_protein
Match: RID42847.1 (hypothetical protein BRARA_J02704 [Brassica rapa])

HSP 1 Score: 290 bits (741), Expect = 1.080e-97
Identity = 141/148 (95.27%), Postives = 143/148 (96.62%), Query Frame = 0

Query:    1 MASSFWNIAYQQATKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRI 148
            MASSFWNIAYQQA KSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISK SRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVV PGKNDESRTIVVPKGHVWVEGDY QNSRDSR FGPVPYAL+QGRLLWR+
Sbjct:    1 MASSFWNIAYQQAMKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKPSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVGPGKNDESRTIVVPKGHVWVEGDYIQNSRDSRIFGPVPYALIQGRLLWRV 148

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BLAST of BolC9t59939H-R vs. GenBank_protein
Match: XP_013715719.1 (mitochondrial inner membrane protease subunit 1-like [Brassica napus] >VDD21015.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 284 bits (727), Expect = 1.460e-95
Identity = 137/148 (92.57%), Postives = 141/148 (95.27%), Query Frame = 0

Query:    1 MASSFWNIAYQQATKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRI 148
            MASSFWNIAYQQA +SGV VAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISK SRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVV PGKNDESRTIVVPKGHVWVEGDY QNSRDSR FGPVPY L+QGR+LWR+
Sbjct:    1 MASSFWNIAYQQAMRSGVFVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKPSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVGPGKNDESRTIVVPKGHVWVEGDYIQNSRDSRIFGPVPYGLIQGRVLWRV 148

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BLAST of BolC9t59939H-R vs. GenBank_protein
Match: KAF2536502.1 (hypothetical protein F2Q68_00023322 [Brassica cretica] >KAF2571675.1 hypothetical protein F2Q70_00006653 [Brassica cretica])

HSP 1 Score: 270 bits (691), Expect = 2.870e-90
Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0

Query:   15 KSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRI 148
            KSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKN ESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYAL+QGRLLWR+
Sbjct:    2 KSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNHESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALIQGRLLWRV 135

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BLAST of BolC9t59939H-R vs. GenBank_protein
Match: XP_013593759.1 (PREDICTED: mitochondrial inner membrane protease subunit 1 isoform X1 [Brassica oleracea var. oleracea])

HSP 1 Score: 266 bits (679), Expect = 7.030e-88
Identity = 126/161 (78.26%), Postives = 143/161 (88.82%), Query Frame = 0

Query:    2 ASSFWNIAYQQATKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLHPSGNVVLAERIS----KLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDPGKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRIISKIVKFSLV 158
            +SSFWN+AY+QA KSGV VAKVYSFLHVTT YLAFPA+AFGPSMIPTLHPSGNVVLAERIS    KLSRGDV+V QSPEDPNK+P KRV+GLEGD VSFVVDP KNDESRT+VVPKGHVWV+GDYTQNSRDSR FGP+PY L++GR+LWR+   +  +SL+
Sbjct:    4 SSSFWNVAYRQAMKSGVFVAKVYSFLHVTTTYLAFPAFAFGPSMIPTLHPSGNVVLAERISTRSRKLSRGDVIVLQSPEDPNKIPIKRVIGLEGDCVSFVVDPEKNDESRTVVVPKGHVWVQGDYTQNSRDSRIFGPLPYGLIRGRVLWRVCICLTLYSLI 164

The following BLAST results are available for this feature:

BLAST of BolC9t59939H-R vs. GenBank_protein

BLAST of BolC9t59939H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
VDD34616.1	4.880e-131	100.00	unnamed protein product [Brassica oleracea]	[more]
CAF2360244.1	1.140e-120	91.40	unnamed protein product [Brassica napus]	[more]
XP_022566966.1	7.190e-102	98.65	mitochondrial inner membrane protease subunit 1 [B...	[more]
XP_013611938.1	3.360e-101	97.30	PREDICTED: mitochondrial inner membrane protease s...	[more]
KAF3501871.1	3.820e-101	94.81	hypothetical protein F2Q69_00045583 [Brassica cret...	[more]
XP_009122556.1	4.570e-99	95.95	mitochondrial inner membrane protease subunit 1 [B...	[more]
RID42847.1	1.080e-97	95.27	hypothetical protein BRARA_J02704 [Brassica rapa]	[more]
XP_013715719.1	1.460e-95	92.57	mitochondrial inner membrane protease subunit 1-li...	[more]
KAF2536502.1	2.870e-90	97.76	hypothetical protein F2Q68_00023322 [Brassica cret...	[more]
XP_013593759.1	7.030e-88	78.26	PREDICTED: mitochondrial inner membrane protease s...	[more]

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GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
biological_process	GO:0006465	signal peptide processing
cellular_component	GO:0016020	membrane
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0008236	serine-type peptidase activity

InterPro

Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000223	Peptidase S26A, signal peptidase I	PRINTS	PR00727	LEADERPTASE	coord: 111..130 score: 51.79 coord: 82..94 score: 50.55 coord: 33..49 score: 36.69
IPR000223	Peptidase S26A, signal peptidase I	TIGRFAM	TIGR02227	TIGR02227	coord: 27..96 e-value: 2.6E-13 score: 48.1
IPR019533	Peptidase S26	PFAM	PF10502	Peptidase_S26	coord: 21..96 e-value: 2.8E-12 score: 46.9 coord: 106..145 e-value: 1.1E-7 score: 32.0
IPR019533	Peptidase S26	CDD	cd06530	S26_SPase_I	coord: 42..143 e-value: 1.50716E-23 score: 87.2559
None	No IPR available	GENE3D	2.10.109.10	Umud Fragment, subunit A	coord: 31..158 e-value: 2.4E-26 score: 94.2
None	No IPR available	PANTHER	PTHR12383	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	coord: 3..150
None	No IPR available	PANTHER	PTHR12383:SF30	PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN	coord: 3..150
IPR036286	LexA/Signal peptidase-like superfamily	SUPERFAMILY	51306	LexA/Signal peptidase	coord: 33..150

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C9	contig	C9:61587433..61588462 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
Interproscan on OGS1.0	2022-03-19
Blast2go on OGS1.0	2022-03-19
Diamond on OGS1.0 vs NR	2022-03-19
Brassica oleracea HDEM OGS1.0	2018-11-02

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC9t59939H-R	BolC9t59939H-R	Brassica oleracea HDEM	mRNA	C9 61587433..61588462 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>BolC9t59939H-R-P ID=BolC9t59939H-R-P|Name=BolC9t59939H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=187bp
MASSFWNIAYQQATKSGVLVAKVYSFLHVTTNYLAFPAYAFGPSMIPTLH
PSGNVVLAERISKLSRGDVVVFQSPEDPNKLPTKRVVGLEGDSVSFVVDP
GKNDESRTIVVPKGHVWVEGDYTQNSRDSRSFGPVPYALVQGRLLWRIIS
KIVKFSLVYINCESSDALLSSERLSVQMLCSQVKFW.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008236	serine-type peptidase activity
GO:0004252	serine-type endopeptidase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis
GO:0006465	signal peptide processing

Vocabulary: **INTERPRO**
Term	Definition
IPR036286	LexA/Signal_pep-like_sf
IPR019533	Peptidase_S26
IPR000223	Pept_S26A_signal_pept_1

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Orthology

View orthology data for BolC9t59939H-R-P