BolC9t59814H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolC9t59814H-R
Unique NameBolC9t59814H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length125
Homology
BLAST of BolC9t59814H-R vs. GenBank_protein
Match: VDD34491.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 244 bits (623), Expect = 2.290e-81
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0
Query:    1 MTINKCTCEFKQHHIPHGKESVQENKILSQENKIQRFNEHVQDLRRQLVQCRNENQVELTELVTELDPSTNFVMLPLMAEGLAMRETIRKSKELGIRRLRCESDSSQLIKALNSYLLSLWRFVG 124
            MTINKCTCEFKQHHIPHGKESVQENKILSQENKIQRFNEHVQDLRRQLVQCRNENQVELTELVTELDPSTNFVMLPLMAEGLAMRETIRKSKELGIRRLRCESDSSQLIKALNSYLLSLWRFVG
Sbjct:    1 MTINKCTCEFKQHHIPHGKESVQENKILSQENKIQRFNEHVQDLRRQLVQCRNENQVELTELVTELDPSTNFVMLPLMAEGLAMRETIRKSKELGIRRLRCESDSSQLIKALNSYLLSLWRFVG 124          
BLAST of BolC9t59814H-R vs. GenBank_protein
Match: CAF2322249.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 197 bits (502), Expect = 5.010e-63
Identity = 107/124 (86.29%), Postives = 109/124 (87.90%), Query Frame = 0
Query:    1 MTINKCTCEFKQHHIPHGKESVQENKILSQENKIQRFNEHVQDLRRQLVQCRNENQVELTELVTELDPSTNFVMLPLMAEGLAMRETIRKSKELGIRRLRCESDSSQLIKALNSYLLSLWRFVG 124
            MTINKCTCEFKQHHIPHGKESVQE KI SQENKIQRFNE VQDLRRQLVQCRNENQVELTE+VTELD       LPL  +GLAMRE I KSKELGIRRLRCESDSS LIKALNSYLLSLWRFVG
Sbjct:    1 MTINKCTCEFKQHHIPHGKESVQEKKIFSQENKIQRFNEQVQDLRRQLVQCRNENQVELTEVVTELD------QLPL--KGLAMREAIWKSKELGIRRLRCESDSSPLIKALNSYLLSLWRFVG 116          
BLAST of BolC9t59814H-R vs. GenBank_protein
Match: VDD20781.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 184 bits (468), Expect = 9.540e-58
Identity = 106/131 (80.92%), Postives = 108/131 (82.44%), Query Frame = 0
Query:    1 MTINKCTCEFK---QHHIPHGKESVQENKILSQENKIQRFNEHVQDLRRQL----VQCRNENQVELTELVTELDPSTNFVMLPLMAEGLAMRETIRKSKELGIRRLRCESDSSQLIKALNSYLLSLWRFVG 124
            M INKCTCEFK   QHHIPHGKESVQE KILSQEN  QRFNE VQD RRQL    VQCRNENQVELTELVTELD       LPL  +GLAMRE IRKSKELGIRR+RCESDSSQLIKALNSYLLSLWRFVG
Sbjct:    1 MRINKCTCEFKSDKQHHIPHGKESVQEKKILSQENNTQRFNEQVQDPRRQLDRYWVQCRNENQVELTELVTELD------QLPL--KGLAMREAIRKSKELGIRRVRCESDSSQLIKALNSYLLSLWRFVG 123          
BLAST of BolC9t59814H-R vs. GenBank_protein
Match: CAF2322045.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 179 bits (455), Expect = 2.460e-55
Identity = 97/116 (83.62%), Postives = 99/116 (85.34%), Query Frame = 0
Query:    9 EFKQHHIPHGKESVQENKILSQENKIQRFNEHVQDLRRQLVQCRNENQVELTELVTELDPSTNFVMLPLMAEGLAMRETIRKSKELGIRRLRCESDSSQLIKALNSYLLSLWRFVG 124
            + +QHHIPHGKESVQE KILSQENKIQRFNE VQDLRRQLVQCRNENQ            STNFVM PLMAEGLAMRE IRKSKELGIRRLRCESDSSQLIKALNSYLLSLWRFVG
Sbjct:   47 DTEQHHIPHGKESVQEKKILSQENKIQRFNEQVQDLRRQLVQCRNENQ--------RFSSSTNFVMSPLMAEGLAMREAIRKSKELGIRRLRCESDSSQLIKALNSYLLSLWRFVG 154          
BLAST of BolC9t59814H-R vs. GenBank_protein
Match: CAF2322178.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 175 bits (444), Expect = 1.160e-53
Identity = 95/116 (81.90%), Postives = 98/116 (84.48%), Query Frame = 0
Query:    9 EFKQHHIPHGKESVQENKILSQENKIQRFNEHVQDLRRQLVQCRNENQVELTELVTELDPSTNFVMLPLMAEGLAMRETIRKSKELGIRRLRCESDSSQLIKALNSYLLSLWRFVG 124
            + +QHHIPHGKESVQE KILSQENKIQRFN  VQ+LRRQLVQCRNENQ            STNFVM PLMAEGLAMRE IRKSKELGIRRLRCESDSSQLIKALNSYLLSLWRFVG
Sbjct:   47 DTEQHHIPHGKESVQEKKILSQENKIQRFNAQVQNLRRQLVQCRNENQ--------RFSSSTNFVMSPLMAEGLAMREAIRKSKELGIRRLRCESDSSQLIKALNSYLLSLWRFVG 154          
BLAST of BolC9t59814H-R vs. GenBank_protein
Match: CAF1789726.1 (unnamed protein product, partial [Brassica napus])

HSP 1 Score: 160 bits (405), Expect = 7.510e-48
Identity = 88/114 (77.19%), Postives = 92/114 (80.70%), Query Frame = 0
Query:   11 KQHHIPHGKESVQENKILSQENKIQRFNEHVQDLRRQLVQCRNENQVELTELVTELDPSTNFVMLPLMAEGLAMRETIRKSKELGIRRLRCESDSSQLIKALNSYLLSLWRFVG 124
            KQHHIPHGKESVQE KILSQEN  QRFNE VQD RRQLVQ +          + +   STNFVM PLMAEGLAMRE IRKSKELGIRR+RCESDSSQLIKALNSYLLSLWRFVG
Sbjct:   42 KQHHIPHGKESVQEKKILSQENNTQRFNEQVQDPRRQLVQSK----------LRDFSSSTNFVMSPLMAEGLAMREAIRKSKELGIRRVRCESDSSQLIKALNSYLLSLWRFVG 145          
BLAST of BolC9t59814H-R vs. GenBank_protein
Match: CAF2358385.1 (unnamed protein product, partial [Brassica napus])

HSP 1 Score: 159 bits (403), Expect = 8.890e-48
Identity = 89/114 (78.07%), Postives = 90/114 (78.95%), Query Frame = 0
Query:   11 KQHHIPHGKESVQENKILSQENKIQRFNEHVQDLRRQLVQCRNENQVELTELVTELDPSTNFVMLPLMAEGLAMRETIRKSKELGIRRLRCESDSSQLIKALNSYLLSLWRFVG 124
            KQHHIPHGKESVQE KILSQEN  QRFNE VQD RRQLVQ R                STNFVM PLMAEGLAMRE IRKSKELGIRR+RCESDSSQLIKALNSYLLSLWRFVG
Sbjct:   28 KQHHIPHGKESVQEKKILSQENNTQRFNEQVQDPRRQLVQSR-------------FSSSTNFVMSPLMAEGLAMREAIRKSKELGIRRVRCESDSSQLIKALNSYLLSLWRFVG 128          
BLAST of BolC9t59814H-R vs. GenBank_protein
Match: VDD34490.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 148 bits (374), Expect = 5.790e-43
Identity = 84/103 (81.55%), Postives = 88/103 (85.44%), Query Frame = 0
Query:   12 QHHIPHGKESVQENKILSQENKIQRFNEHVQDLRRQLVQCRNENQVELTELVTELDPSTNFVMLPLMAEGLAMRETIRKSKELGIRRLRCESDSSQLIKALNS 114
            QHHIPHGKESVQE KILSQENKIQR N+ VQDLRRQLVQCRNEN VEL ELVTELD       LPL   GLAMRE+I+KSKELGIR+LRCESDSSQLIKALNS
Sbjct:   48 QHHIPHGKESVQEKKILSQENKIQRLNDQVQDLRRQLVQCRNENHVELMELVTELD------QLPL--SGLAMRESIKKSKELGIRQLRCESDSSQLIKALNS 142          
BLAST of BolC9t59814H-R vs. GenBank_protein
Match: VDD34493.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 147 bits (370), Expect = 2.340e-42
Identity = 83/103 (80.58%), Postives = 88/103 (85.44%), Query Frame = 0
Query:   12 QHHIPHGKESVQENKILSQENKIQRFNEHVQDLRRQLVQCRNENQVELTELVTELDPSTNFVMLPLMAEGLAMRETIRKSKELGIRRLRCESDSSQLIKALNS 114
            QHHIPHGKESV+E KILSQENKIQR N+ VQDLRRQLVQCRNEN VEL ELVTELD       LPL   GLAMRE+I+KSKELGIR+LRCESDSSQLIKALNS
Sbjct:   48 QHHIPHGKESVKEKKILSQENKIQRLNDQVQDLRRQLVQCRNENHVELMELVTELD------QLPL--SGLAMRESIKKSKELGIRQLRCESDSSQLIKALNS 142          
BLAST of BolC9t59814H-R vs. GenBank_protein
Match: KAF2536234.1 (hypothetical protein F2Q68_00023219 [Brassica cretica])

HSP 1 Score: 145 bits (366), Expect = 5.210e-41
Identity = 84/114 (73.68%), Postives = 88/114 (77.19%), Query Frame = 0
Query:   12 QHHIPHGKESVQENKILSQENKIQRFNEHVQDLRRQLVQCRNENQVE--LTEL---------VTELDPSTNFVMLPLMAEGLAMRETIRKSKELGIRRLRCESDSSQLIKALNS 114
            QHHIPHGKESVQE KILSQENKIQR N+ VQDLRRQLVQCRNEN VE  L  L               ST+FVM PLMAEG AMRE I+KSKELGIR+LRCESDSSQLIKALNS
Sbjct:   87 QHHIPHGKESVQEKKILSQENKIQRLNDQVQDLRRQLVQCRNENLVEGLLAGLGWTIKNSRETQRFSSSTDFVMSPLMAEGFAMREAIKKSKELGIRQLRCESDSSQLIKALNS 200          
The following BLAST results are available for this feature:
BLAST of BolC9t59814H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
VDD34491.12.290e-81100.00unnamed protein product [Brassica oleracea][more]
CAF2322249.15.010e-6386.29unnamed protein product [Brassica napus][more]
VDD20781.19.540e-5880.92unnamed protein product [Brassica rapa][more]
CAF2322045.12.460e-5583.62unnamed protein product [Brassica napus][more]
CAF2322178.11.160e-5381.90unnamed protein product [Brassica napus][more]
CAF1789726.17.510e-4877.19unnamed protein product, partial [Brassica napus][more]
CAF2358385.18.890e-4878.07unnamed protein product, partial [Brassica napus][more]
VDD34490.15.790e-4381.55unnamed protein product [Brassica oleracea][more]
VDD34493.12.340e-4280.58unnamed protein product [Brassica oleracea][more]
KAF2536234.15.210e-4173.68hypothetical protein F2Q68_00023219 [Brassica cret... [more]

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InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 27..61
NoneNo IPR availablePANTHERPTHR34564PEPTIDYL-PROLYL CIS-TRANS ISOMERASE Gcoord: 9..67
NoneNo IPR availablePANTHERPTHR34564:SF10HYALURONAN MEDIATED MOTILITY RECEPTOR-LIKE PROTEINcoord: 9..67

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C9contigC9:60995066..61003422 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC9t59814H-RBolC9t59814H-RBrassica oleracea HDEMmRNAC9 60995066..61003422 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolC9t59814H-R-P ID=BolC9t59814H-R-P|Name=BolC9t59814H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=125bp
MTINKCTCEFKQHHIPHGKESVQENKILSQENKIQRFNEHVQDLRRQLVQ
CRNENQVELTELVTELDPSTNFVMLPLMAEGLAMRETIRKSKELGIRRLR
CESDSSQLIKALNSYLLSLWRFVG.
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