BolC9t59811H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolC9t59811H-R
Unique NameBolC9t59811H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length66
Homology
[Close]
BLAST of BolC9t59811H-R vs. GenBank_protein
Match: VDD34488.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 124 bits (312), Expect = 9.150e-36
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 
Query:    1 MIADLSQTEIEKLKSYASKKIAYYDRELRKQHPNTSGNEPFLEDDDGEMKTYEGESSESDGADNP 65
            MIADLSQTEIEKLKSYASKKIAYYDRELRKQHPNTSGNEPFLEDDDGEMKTYEGESSESDGADNP
Sbjct:    1 MIADLSQTEIEKLKSYASKKIAYYDRELRKQHPNTSGNEPFLEDDDGEMKTYEGESSESDGADNP 65
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BLAST of BolC9t59811H-R vs. GenBank_protein
Match: VDD34482.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 124 bits (312), Expect = 1.800e-34
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 
Query:    1 MIADLSQTEIEKLKSYASKKIAYYDRELRKQHPNTSGNEPFLEDDDGEMKTYEGESSESDGADNP 65
            MIADLSQTEIEKLKSYASKKIAYYDRELRKQHPNTSGNEPFLEDDDGEMKTYEGESSESDGADNP
Sbjct:  103 MIADLSQTEIEKLKSYASKKIAYYDRELRKQHPNTSGNEPFLEDDDGEMKTYEGESSESDGADNP 167
[Close]
BLAST of BolC9t59811H-R vs. GenBank_protein
Match: KAG2262729.1 (hypothetical protein Bca52824_069808 [Brassica carinata])

HSP 1 Score: 124 bits (312), Expect = 3.520e-34
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 
Query:    1 MIADLSQTEIEKLKSYASKKIAYYDRELRKQHPNTSGNEPFLEDDDGEMKTYEGESSESDGADNP 65
            MIADLSQTEIEKLKSYASKKIAYYDRELRKQHPNTSGNEPFLEDDDGEMKTYEGESSESDGADNP
Sbjct:  127 MIADLSQTEIEKLKSYASKKIAYYDRELRKQHPNTSGNEPFLEDDDGEMKTYEGESSESDGADNP 191
[Close]
BLAST of BolC9t59811H-R vs. GenBank_protein
Match: VDD34494.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 122 bits (305), Expect = 4.040e-33
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 
Query:    1 MIADLSQTEIEKLKSYASKKIAYYDRELRKQHPNTSGNEPFLEDDDGEMKTYEGESSESDGADN 64
            MIADLSQTEIEKLKSYASKKIAYYDRELRKQHPNTSGNEPFLEDDDGEMKTYEGESSESDGADN
Sbjct:  127 MIADLSQTEIEKLKSYASKKIAYYDRELRKQHPNTSGNEPFLEDDDGEMKTYEGESSESDGADN 190
[Close]
BLAST of BolC9t59811H-R vs. GenBank_protein
Match: XP_013615131.1 (PREDICTED: agamous-like MADS-box protein AGL80 [Brassica oleracea var. oleracea])

HSP 1 Score: 122 bits (305), Expect = 4.040e-33
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 
Query:    1 MIADLSQTEIEKLKSYASKKIAYYDRELRKQHPNTSGNEPFLEDDDGEMKTYEGESSESDGADN 64
            MIADLSQTEIEKLKSYASKKIAYYDRELRKQHPNTSGNEPFLEDDDGEMKTYEGESSESDGADN
Sbjct:  127 MIADLSQTEIEKLKSYASKKIAYYDRELRKQHPNTSGNEPFLEDDDGEMKTYEGESSESDGADN 190
[Close]
BLAST of BolC9t59811H-R vs. GenBank_protein
Match: XP_013679582.1 (agamous-like MADS-box protein AGL80 [Brassica napus] >KAG2262728.1 hypothetical protein Bca52824_069807 [Brassica carinata] >KAG2262732.1 hypothetical protein Bca52824_069811 [Brassica carinata] >VDD34487.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 122 bits (305), Expect = 4.040e-33
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 
Query:    1 MIADLSQTEIEKLKSYASKKIAYYDRELRKQHPNTSGNEPFLEDDDGEMKTYEGESSESDGADN 64
            MIADLSQTEIEKLKSYASKKIAYYDRELRKQHPNTSGNEPFLEDDDGEMKTYEGESSESDGADN
Sbjct:  127 MIADLSQTEIEKLKSYASKKIAYYDRELRKQHPNTSGNEPFLEDDDGEMKTYEGESSESDGADN 190
[Close]
BLAST of BolC9t59811H-R vs. GenBank_protein
Match: XP_013608518.1 (PREDICTED: agamous-like MADS-box protein AGL80 [Brassica oleracea var. oleracea] >XP_013608519.1 PREDICTED: agamous-like MADS-box protein AGL80 [Brassica oleracea var. oleracea] >XP_013608520.1 PREDICTED: agamous-like MADS-box protein AGL80 [Brassica oleracea var. oleracea])

HSP 1 Score: 122 bits (305), Expect = 4.040e-33
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 
Query:    1 MIADLSQTEIEKLKSYASKKIAYYDRELRKQHPNTSGNEPFLEDDDGEMKTYEGESSESDGADN 64
            MIADLSQTEIEKLKSYASKKIAYYDRELRKQHPNTSGNEPFLEDDDGEMKTYEGESSESDGADN
Sbjct:  127 MIADLSQTEIEKLKSYASKKIAYYDRELRKQHPNTSGNEPFLEDDDGEMKTYEGESSESDGADN 190
[Close]
BLAST of BolC9t59811H-R vs. GenBank_protein
Match: XP_013699796.1 (agamous-like MADS-box protein AGL80 [Brassica napus])

HSP 1 Score: 122 bits (305), Expect = 4.040e-33
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 
Query:    1 MIADLSQTEIEKLKSYASKKIAYYDRELRKQHPNTSGNEPFLEDDDGEMKTYEGESSESDGADN 64
            MIADLSQTEIEKLKSYASKKIAYYDRELRKQHPNTSGNEPFLEDDDGEMKTYEGESSESDGADN
Sbjct:  127 MIADLSQTEIEKLKSYASKKIAYYDRELRKQHPNTSGNEPFLEDDDGEMKTYEGESSESDGADN 190
[Close]
BLAST of BolC9t59811H-R vs. GenBank_protein
Match: CDY65795.1 (BnaAnng21100D [Brassica napus])

HSP 1 Score: 120 bits (300), Expect = 7.540e-33
Identity = 63/64 (98.44%), Postives = 63/64 (98.44%), Query Frame = 0 
Query:    1 MIADLSQTEIEKLKSYASKKIAYYDRELRKQHPNTSGNEPFLEDDDGEMKTYEGESSESDGADN 64
            MIADLSQTEIEKLKSYASKKI YYDRELRKQHPNTSGNEPFLEDDDGEMKTYEGESSESDGADN
Sbjct:   87 MIADLSQTEIEKLKSYASKKIEYYDRELRKQHPNTSGNEPFLEDDDGEMKTYEGESSESDGADN 150
[Close]
BLAST of BolC9t59811H-R vs. GenBank_protein
Match: XP_013699798.1 (agamous-like MADS-box protein AGL92 [Brassica napus] >CAF2322170.1 unnamed protein product [Brassica napus])

HSP 1 Score: 120 bits (300), Expect = 1.000e-32
Identity = 63/64 (98.44%), Postives = 63/64 (98.44%), Query Frame = 0 
Query:    1 MIADLSQTEIEKLKSYASKKIAYYDRELRKQHPNTSGNEPFLEDDDGEMKTYEGESSESDGADN 64
            MIADLSQTEIEKLKSYASKKI YYDRELRKQHPNTSGNEPFLEDDDGEMKTYEGESSESDGADN
Sbjct:   97 MIADLSQTEIEKLKSYASKKIEYYDRELRKQHPNTSGNEPFLEDDDGEMKTYEGESSESDGADN 160
The following BLAST results are available for this feature:
BLAST of BolC9t59811H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
VDD34488.19.150e-36100.00unnamed protein product [Brassica oleracea][more]
VDD34482.11.800e-34100.00unnamed protein product [Brassica oleracea][more]
KAG2262729.13.520e-34100.00hypothetical protein Bca52824_069808 [Brassica car... [more]
VDD34494.14.040e-33100.00unnamed protein product [Brassica oleracea][more]
XP_013615131.14.040e-33100.00PREDICTED: agamous-like MADS-box protein AGL80 [Br... [more]
XP_013679582.14.040e-33100.00agamous-like MADS-box protein AGL80 [Brassica napu... [more]
XP_013608518.14.040e-33100.00PREDICTED: agamous-like MADS-box protein AGL80 [Br... [more]
XP_013699796.14.040e-33100.00agamous-like MADS-box protein AGL80 [Brassica napu... [more]
CDY65795.17.540e-3398.44BnaAnng21100D [Brassica napus][more]
XP_013699798.11.000e-3298.44agamous-like MADS-box protein AGL92 [Brassica napu... [more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045944 positive regulation of transcription by RNA polymerase II
cellular_component GO:0005634 nucleus
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000987 proximal promoter sequence-specific DNA binding
molecular_function GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C9contigC9:60982081..60982278 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC9t59811H-RBolC9t59811H-RBrassica oleracea HDEMmRNAC9 60982081..60982278 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolC9t59811H-R-P ID=BolC9t59811H-R-P|Name=BolC9t59811H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=66bp
MIADLSQTEIEKLKSYASKKIAYYDRELRKQHPNTSGNEPFLEDDDGEMK
TYEGESSESDGADNP.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
TermDefinition
GO:0045944positive regulation of transcription by RNA polymerase II
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0000987proximal promoter sequence-specific DNA binding
GO:0000981RNA polymerase II transcription factor activity, sequence-specific DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus