BolC9t59712H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolC9t59712H-R
Unique NameBolC9t59712H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length207
Homology
BLAST of BolC9t59712H-R vs. GenBank_protein
Match: NP_001303211.1 (ethylene-responsive transcription factor ERF106-like [Brassica napus] >XP_013606854.1 PREDICTED: ethylene-responsive transcription factor ERF106 [Brassica oleracea var. oleracea] >AAR13699.1 AP2 transcription factor/ethylene response element [Brassica oleracea] >ADZ29095.1 ethylene response factor 50 [Brassica napus] >CAF1789157.1 unnamed protein product [Brassica napus] >CDY60497.1 BnaCnng36390D [Brassica napus] >VDD34389.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 394 bits (1012), Expect = 5.350e-138
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0
Query:    1 MAAFEESSDLDAIQEHLLEDFLVADGFMGDFDFNASFVSGLWCIEPVMNQVPKQEPDSPVLDPDSFVREFLQVEAESSSEQNSSPHETDQSVSPRKEAKRLEEEEEPRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESNVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPVNLGRKRKRSDVQEELQRSQSNSSSSSSDL 206
            MAAFEESSDLDAIQEHLLEDFLVADGFMGDFDFNASFVSGLWCIEPVMNQVPKQEPDSPVLDPDSFVREFLQVEAESSSEQNSSPHETDQSVSPRKEAKRLEEEEEPRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESNVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPVNLGRKRKRSDVQEELQRSQSNSSSSSSDL
Sbjct:    1 MAAFEESSDLDAIQEHLLEDFLVADGFMGDFDFNASFVSGLWCIEPVMNQVPKQEPDSPVLDPDSFVREFLQVEAESSSEQNSSPHETDQSVSPRKEAKRLEEEEEPRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESNVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPVNLGRKRKRSDVQEELQRSQSNSSSSSSDL 206          
BLAST of BolC9t59712H-R vs. GenBank_protein
Match: KAF3501906.1 (hypothetical protein F2Q69_00045352 [Brassica cretica])

HSP 1 Score: 386 bits (992), Expect = 5.990e-135
Identity = 203/206 (98.54%), Postives = 204/206 (99.03%), Query Frame = 0
Query:    1 MAAFEESSDLDAIQEHLLEDFLVADGFMGDFDFNASFVSGLWCIEPVMNQVPKQEPDSPVLDPDSFVREFLQVEAESSSEQNSSPHETDQSVSPRKEAKRLEEEEEPRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESNVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPVNLGRKRKRSDVQEELQRSQSNSSSSSSDL 206
            MAAF ESSDLDAIQEHLLEDFLVADGFMGDFDFNASFVSGLWCIEPVMNQVPKQEPDSPVLDPDSFV+EFLQVEAESSSEQNSSPHETDQSVSPRKEAKRLEEEEEPRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESNVDAARAYD AAFKLRGRKAVLNFPLDAGKYEAPVNLGRKRKRSDVQEELQRSQSNSSSSSSDL
Sbjct:    1 MAAFGESSDLDAIQEHLLEDFLVADGFMGDFDFNASFVSGLWCIEPVMNQVPKQEPDSPVLDPDSFVKEFLQVEAESSSEQNSSPHETDQSVSPRKEAKRLEEEEEPRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESNVDAARAYDSAAFKLRGRKAVLNFPLDAGKYEAPVNLGRKRKRSDVQEELQRSQSNSSSSSSDL 206          
BLAST of BolC9t59712H-R vs. GenBank_protein
Match: XP_009122325.2 (ethylene-responsive transcription factor ERF106 [Brassica rapa] >XP_013715722.1 ethylene-responsive transcription factor ERF106 [Brassica napus] >RID42658.1 hypothetical protein BRARA_J02528 [Brassica rapa] >CAF2357011.1 unnamed protein product [Brassica napus] >CDY64666.1 BnaA10g30200D [Brassica napus])

HSP 1 Score: 383 bits (983), Expect = 1.690e-133
Identity = 203/211 (96.21%), Postives = 204/211 (96.68%), Query Frame = 0
Query:    1 MAAFEESSDLDAIQEHLLEDFLVADGFMGDFDFNASFVSGLWCIEPVMNQVPKQEPDSPVLDPDSFVREFLQVEAESS-----SEQNSSPHETDQSVSPRKEAKRLEEEEEPRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESNVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPVNLGRKRKRSDVQEELQRSQSNSSSSSSDL 206
            MAAFEESSDLDAIQEHLLEDFLVADGFMGDFDFNASFVSGLWCIEPVMNQVPKQEPDSPVLDPDSFV+EFLQVE ESS     SEQNSSPHETDQSVSPRKEAKRLEEEEEPRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESNVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPVN GRKRKRSDVQEELQRSQSNSSSSSSDL
Sbjct:    1 MAAFEESSDLDAIQEHLLEDFLVADGFMGDFDFNASFVSGLWCIEPVMNQVPKQEPDSPVLDPDSFVKEFLQVEVESSTSTGVSEQNSSPHETDQSVSPRKEAKRLEEEEEPRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESNVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPVNSGRKRKRSDVQEELQRSQSNSSSSSSDL 211          
BLAST of BolC9t59712H-R vs. GenBank_protein
Match: VDD20617.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 374 bits (961), Expect = 3.800e-130
Identity = 200/211 (94.79%), Postives = 201/211 (95.26%), Query Frame = 0
Query:    1 MAAFEESSDLDAIQEHLLEDFLVADGFMGDFDFNASFVSGLWCIEPVMNQVPKQEPDSPVLDPDSFVREFLQVEAESS-----SEQNSSPHETDQSVSPRKEAKRLEEEEEPRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESNVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPVNLGRKRKRSDVQEELQRSQSNSSSSSSDL 206
            MAAFEESSDLDAIQEHLLEDFLVADGFMGDFDFNASFVSGLWCIEPVMNQVPKQEPDSPVLDPDSFV+EFLQVE ESS     SEQNSS  ETDQS SPRKEAKRLEEEEEPRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESNVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPVN GRKRKRSDVQEELQRSQSNSSSSSSDL
Sbjct:    1 MAAFEESSDLDAIQEHLLEDFLVADGFMGDFDFNASFVSGLWCIEPVMNQVPKQEPDSPVLDPDSFVKEFLQVEVESSTSTGVSEQNSSSPETDQSASPRKEAKRLEEEEEPRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESNVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPVNSGRKRKRSDVQEELQRSQSNSSSSSSDL 211          
BLAST of BolC9t59712H-R vs. GenBank_protein
Match: KAF2539203.1 (hypothetical protein F2Q68_00023136 [Brassica cretica] >KAF2573810.1 hypothetical protein F2Q70_00006507 [Brassica cretica])

HSP 1 Score: 374 bits (959), Expect = 7.410e-130
Identity = 193/198 (97.47%), Postives = 194/198 (97.98%), Query Frame = 0
Query:    1 MAAFEESSDLDAIQEHLLEDFLVADGFMGDFDFNASFVSGLWCIEPVMNQVPKQEPDSPVLDPDSFVREFLQVEAESSSEQNSSPHETDQSVSPRKEAKRLEEEEEPRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESNVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPVNLGRKRKRSDVQEELQRSQSN 198
            MAAF ESSDLDAIQEHLLEDFLVADGFMGDFDFNASFVSGLWCIEPVMNQVPKQEPDSPVLDPDSFV EFLQVE ESSSEQNSSPHETDQSVSPRKEAKR+EEEEEPRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESNVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPVN GRKRKRSDVQEELQRSQSN
Sbjct:    1 MAAFGESSDLDAIQEHLLEDFLVADGFMGDFDFNASFVSGLWCIEPVMNQVPKQEPDSPVLDPDSFVGEFLQVEVESSSEQNSSPHETDQSVSPRKEAKRMEEEEEPRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESNVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPVNSGRKRKRSDVQEELQRSQSN 198          
BLAST of BolC9t59712H-R vs. GenBank_protein
Match: KAG2262812.1 (hypothetical protein Bca52824_069891 [Brassica carinata])

HSP 1 Score: 362 bits (928), Expect = 2.080e-125
Identity = 192/206 (93.20%), Postives = 192/206 (93.20%), Query Frame = 0
Query:    1 MAAFEESSDLDAIQEHLLEDFLVADGFMGDFDFNASFVSGLWCIEPVMNQVPKQEPDSPVLDPDSFVREFLQVEAESSSEQNSSPHETDQSVSPRKEAKRLEEEEEPRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESNVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPVNLGRKRKRSDVQEELQRSQSNSSSSSSDL 206
            MAAFEESSDLDAIQEHLLEDFLVADGFMGDFDFNASFVSGLWCIEPVMNQVPKQEPDSPVLDPDSF              QNSSPHETDQSVSPRKEAKRLEEEEEPRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESNVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPVNLGRKRKRSDVQEELQRSQSNSSSSSSDL
Sbjct:    1 MAAFEESSDLDAIQEHLLEDFLVADGFMGDFDFNASFVSGLWCIEPVMNQVPKQEPDSPVLDPDSF--------------QNSSPHETDQSVSPRKEAKRLEEEEEPRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESNVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPVNLGRKRKRSDVQEELQRSQSNSSSSSSDL 192          
BLAST of BolC9t59712H-R vs. GenBank_protein
Match: KAF8115554.1 (hypothetical protein N665_0025s0023 [Sinapis alba])

HSP 1 Score: 358 bits (920), Expect = 7.770e-124
Identity = 190/209 (90.91%), Postives = 198/209 (94.74%), Query Frame = 0
Query:    1 MAAFEESSDLDAIQEHLLEDFLVADGFMGDFDFNASFVSGLWCIEPVMNQVPKQEPDSPVLDPDSFVREFLQVEAESS-----SEQNSSPHETDQSVSPRKEAKRLEEEEEPRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESNVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPVNLGRKRKRSDVQEELQRSQSNSSSSSS 204
            MAAFEESS+LDAIQEHLLEDFLVADGFMGDFDFNASFVSGLWCIEPVMNQVPKQEPDSPVLDPDSFV+EFLQ+EAESS     SE NS+ HETDQSVS RKEA R +E+EEPRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESNVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPVN GRKRKRSDV+EELQR+QSNSSSSSS
Sbjct:    1 MAAFEESSELDAIQEHLLEDFLVADGFMGDFDFNASFVSGLWCIEPVMNQVPKQEPDSPVLDPDSFVKEFLQLEAESSTSTGISELNSTSHETDQSVSTRKEADRFKEQEEPRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESNVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPVNSGRKRKRSDVKEELQRTQSNSSSSSS 209          
BLAST of BolC9t59712H-R vs. GenBank_protein
Match: KAG2262882.1 (hypothetical protein Bca52824_069961 [Brassica carinata])

HSP 1 Score: 354 bits (909), Expect = 3.820e-122
Identity = 186/203 (91.63%), Postives = 191/203 (94.09%), Query Frame = 0
Query:    1 MAAFEESSDLDAIQEHLLEDFLVADGFMGDFDFNASFVSGLWCIEPVMNQVPKQEPDSPVLDPDSFVREFLQVEAESS-----SEQNSSPHETDQSVSPRKEAKRLEEEEEPRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESNVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPVNLGRKRKRSDVQEELQRSQSN 198
            MAAFEESSDLDAIQEHLLEDFLVADGFMGDFDFNASFVSGLWCIEPVMNQVPKQEPDSPVLDPDSFV+EFLQ+EAESS     SE NS+ HETDQSVS RKEA R +E+EEPRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESNVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPVN GRKRKR DVQEELQRSQSN
Sbjct:    1 MAAFEESSDLDAIQEHLLEDFLVADGFMGDFDFNASFVSGLWCIEPVMNQVPKQEPDSPVLDPDSFVKEFLQLEAESSTSTGISELNSTSHETDQSVSTRKEADRFKEQEEPRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESNVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPVNSGRKRKRCDVQEELQRSQSN 203          
BLAST of BolC9t59712H-R vs. GenBank_protein
Match: XP_018446035.1 (PREDICTED: ethylene-responsive transcription factor ERF106 [Raphanus sativus])

HSP 1 Score: 341 bits (874), Expect = 9.120e-117
Identity = 183/207 (88.41%), Postives = 187/207 (90.34%), Query Frame = 0
Query:    1 MAAFEESSDLDAIQEHLLEDFLVADGFMGDFDFNASFVSGLWCIEPVMNQVPKQEPDSPVLDPDSFVREFLQVEAESS-----SEQNSSPHETDQSVSPRKEAKRLEEEEEP---RHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESNVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPVNLGRKRKRSDVQEELQRSQSNS 199
            MAAFE SSDLDAIQEHLLEDFLVADGFMGDFDFNASFVSGLWCIEPVMNQVPKQEPDSPVLDPDSFV+EFLQVE ESS     SEQNSSPHETDQS S RK+ +R E        RHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESNVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPVN GRKRKRSDVQE+LQRSQSNS
Sbjct:    1 MAAFEGSSDLDAIQEHLLEDFLVADGFMGDFDFNASFVSGLWCIEPVMNQVPKQEPDSPVLDPDSFVKEFLQVEVESSASTGISEQNSSPHETDQSASARKKTERFEXXXXXXXXRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESNVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPVNSGRKRKRSDVQEKLQRSQSNS 207          
BLAST of BolC9t59712H-R vs. GenBank_protein
Match: AAR15436.1 (AP2 transcription factor [Sisymbrium irio])

HSP 1 Score: 331 bits (848), Expect = 8.040e-113
Identity = 176/205 (85.85%), Postives = 185/205 (90.24%), Query Frame = 0
Query:    1 MAAFEESSDLDAIQEHLLEDFLVADGFMGDFDFNASFVSGLWCIEPVMNQVPKQEPDSPVLDPDSFVREFLQVEAESSS-----EQNSSPHETDQSVSPRKEAKRLEEEE--EPRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESNVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPVNLGRKRKRSDVQEELQRSQSN 198
            MAAFEES+DLDAIQ HL EDF+V+DGFMGDFDFNASFVSGLWCIEPVMNQVPKQEPDSPVLDPDSFV+EFLQVEAESS+     E NSS  ETDQS+S RK++KR E     EPRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFES+VDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAP N GRKRKRSDVQ ELQRSQSN
Sbjct:    1 MAAFEESTDLDAIQGHLFEDFMVSDGFMGDFDFNASFVSGLWCIEPVMNQVPKQEPDSPVLDPDSFVKEFLQVEAESSTSTGTTELNSSSQETDQSISTRKKSKRFEXXXXXEPRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPANSGRKRKRSDVQGELQRSQSN 205          
The following BLAST results are available for this feature:
BLAST of BolC9t59712H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
NP_001303211.15.350e-138100.00ethylene-responsive transcription factor ERF106-li... [more]
KAF3501906.15.990e-13598.54hypothetical protein F2Q69_00045352 [Brassica cret... [more]
XP_009122325.21.690e-13396.21ethylene-responsive transcription factor ERF106 [B... [more]
VDD20617.13.800e-13094.79unnamed protein product [Brassica rapa][more]
KAF2539203.17.410e-13097.47hypothetical protein F2Q68_00023136 [Brassica cret... [more]
KAG2262812.12.080e-12593.20hypothetical protein Bca52824_069891 [Brassica car... [more]
KAF8115554.17.770e-12490.91hypothetical protein N665_0025s0023 [Sinapis alba][more]
KAG2262882.13.820e-12291.63hypothetical protein Bca52824_069961 [Brassica car... [more]
XP_018446035.19.120e-11788.41PREDICTED: ethylene-responsive transcription facto... [more]
AAR15436.18.040e-11385.85AP2 transcription factor [Sisymbrium irio][more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009873 ethylene-activated signaling pathway
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainPRINTSPR00367ETHRSPELEMNTcoord: 110..121
score: 72.73
coord: 149..169
score: 58.18
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 109..173
e-value: 1.0E-35
score: 134.6
IPR001471AP2/ERF domainPFAMPF00847AP2coord: 109..159
e-value: 2.5E-12
score: 46.9
IPR001471AP2/ERF domainPROSITEPS51032AP2_ERFcoord: 109..167
score: 24.394585
IPR001471AP2/ERF domainCDDcd00018AP2coord: 109..167
e-value: 8.10238E-30
score: 103.12
IPR036955AP2/ERF domain superfamilyGENE3D3.30.730.10AP2/ERF domaincoord: 108..170
e-value: 3.9E-28
score: 99.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..206
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..89
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 192..206
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..191
NoneNo IPR availablePANTHERPTHR31677:SF163BNAC02G01530D PROTEINcoord: 1..59
coord: 80..205
NoneNo IPR availablePANTHERPTHR31677AP2 DOMAIN CLASS TRANSCRIPTION FACTORcoord: 1..59
coord: 80..205
IPR016177DNA-binding domain superfamilySUPERFAMILY54171DNA-binding domaincoord: 109..168

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C9contigC9:60537573..60538193 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC9t59712H-RBolC9t59712H-RBrassica oleracea HDEMmRNAC9 60537573..60538193 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolC9t59712H-R-P ID=BolC9t59712H-R-P|Name=BolC9t59712H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=207bp
MAAFEESSDLDAIQEHLLEDFLVADGFMGDFDFNASFVSGLWCIEPVMNQ
VPKQEPDSPVLDPDSFVREFLQVEAESSSEQNSSPHETDQSVSPRKEAKR
LEEEEEPRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESNVDAARAY
DCAAFKLRGRKAVLNFPLDAGKYEAPVNLGRKRKRSDVQEELQRSQSNSS
SSSSDL.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016177DNA-bd_dom_sf
IPR036955AP2/ERF_dom_sf
IPR001471AP2/ERF_dom
Vocabulary: Biological Process
TermDefinition
GO:0009873ethylene-activated signaling pathway
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus