BolC9t59558H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	BolC9t59558H-R
Unique Name	BolC9t59558H-R-P
Type	polypeptide
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length	275

Homology

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BLAST of BolC9t59558H-R vs. GenBank_protein
Match: XP_013741386.1 (uncharacterized protein BNAC09G47140D isoform X1 [Brassica napus] >CAF1788503.1 unnamed protein product [Brassica napus] >CDY21578.1 BnaC09g47140D [Brassica napus] >VDD34235.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 509 bits (1312), Expect = 1.830e-181
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0

Query:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKPNNRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274
            MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKPNNRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM
Sbjct:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKPNNRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274

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BLAST of BolC9t59558H-R vs. GenBank_protein
Match: XP_013609501.1 (PREDICTED: uncharacterized protein LOC106316180 [Brassica oleracea var. oleracea] >XP_013609502.1 PREDICTED: uncharacterized protein LOC106316180 [Brassica oleracea var. oleracea])

HSP 1 Score: 503 bits (1295), Expect = 7.130e-179
Identity = 270/274 (98.54%), Postives = 271/274 (98.91%), Query Frame = 0

Query:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKPNNRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274
            MEQKPPVRKMKFAPKAPXXXXXXXXXXXXV EDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAH SNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQS+ TENRGSKPNNRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM
Sbjct:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVAEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHSSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSATTENRGSKPNNRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274

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BLAST of BolC9t59558H-R vs. GenBank_protein
Match: KAG5377129.1 (hypothetical protein IGI04_041725 [Brassica rapa subsp. trilocularis] >VDD20343.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 503 bits (1294), Expect = 1.010e-178
Identity = 271/274 (98.91%), Postives = 272/274 (99.27%), Query Frame = 0

Query:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKPNNRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274
            MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQS+ATE RGSKPN RGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM
Sbjct:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSAATETRGSKPNIRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274

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BLAST of BolC9t59558H-R vs. GenBank_protein
Match: KAF3501990.1 (hypothetical protein F2Q69_00045178 [Brassica cretica])

HSP 1 Score: 502 bits (1293), Expect = 1.440e-178
Identity = 271/274 (98.91%), Postives = 271/274 (98.91%), Query Frame = 0

Query:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKPNNRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274
            MEQKPPVRKMKFAPKAPXXXXXXXXXXXX VEDDNNS QAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKP NRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM
Sbjct:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXXVEDDNNSEQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKPINRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274

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BLAST of BolC9t59558H-R vs. GenBank_protein
Match: XP_009122511.1 (uncharacterized protein LOC103847203 isoform X1 [Brassica rapa] >XP_013715571.1 uncharacterized protein LOC106419349 isoform X1 [Brassica napus])

HSP 1 Score: 501 bits (1290), Expect = 4.120e-178
Identity = 270/274 (98.54%), Postives = 271/274 (98.91%), Query Frame = 0

Query:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKPNNRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274
            MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSN PQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQS+ATE RGSKPN RGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM
Sbjct:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNVPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSAATETRGSKPNIRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274

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BLAST of BolC9t59558H-R vs. GenBank_protein
Match: RID42509.1 (hypothetical protein BRARA_J02387 [Brassica rapa])

HSP 1 Score: 501 bits (1289), Expect = 5.850e-178
Identity = 269/274 (98.18%), Postives = 271/274 (98.91%), Query Frame = 0

Query:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKPNNRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274
            MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSN PQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQS+ATE RGSKPN RGGAEKACDLKAASANGFMGKLLVYKSGA+KMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM
Sbjct:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNVPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSAATETRGSKPNIRGGAEKACDLKAASANGFMGKLLVYKSGAIKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274

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BLAST of BolC9t59558H-R vs. GenBank_protein
Match: CAF2354447.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 501 bits (1289), Expect = 5.850e-178
Identity = 268/274 (97.81%), Postives = 272/274 (99.27%), Query Frame = 0

Query:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKPNNRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274
            MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKD+GNHEEALNTAADL+LTEDSEEPKMLFMRLPAVPLANQS+ TENRGSKPN RGGAEKACDLKAASANGFMGKLLVYKSGA+KMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM
Sbjct:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDLGNHEEALNTAADLSLTEDSEEPKMLFMRLPAVPLANQSATTENRGSKPNIRGGAEKACDLKAASANGFMGKLLVYKSGAIKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274

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BLAST of BolC9t59558H-R vs. GenBank_protein
Match: XP_018443985.1 (PREDICTED: uncharacterized protein LOC108815941 isoform X1 [Raphanus sativus])

HSP 1 Score: 485 bits (1249), Expect = 7.570e-172
Identity = 264/275 (96.00%), Postives = 269/275 (97.82%), Query Frame = 0

Query:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAP-QEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKPNNRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274
            MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDN+SAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNS RSNRFS+GYAG +GSNAP QEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEF+KDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQS+ TE RGSKPNNRG AEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM
Sbjct:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNHSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSTRSNRFSSGYAGGYGSNAPPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFMKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSATTEARGSKPNNRGVAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 275

[Close]

BLAST of BolC9t59558H-R vs. GenBank_protein
Match: KAF8115716.1 (hypothetical protein N665_0025s0173 [Sinapis alba])

HSP 1 Score: 483 bits (1242), Expect = 8.510e-171
Identity = 247/274 (90.15%), Postives = 255/274 (93.07%), Query Frame = 0

Query:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKPNNRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274
            MEQKP VRKMKFAPKAP            VVEDDNNSAQAAELLRRVTERSLR+PKGEKKVAASQVAWMGGVVNS RSNRFSNG+AGA+GSN PQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEF+KDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPL+ QS  TE+RG+KPNN+ GAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM
Sbjct:    1 MEQKPTVRKMKFAPKAPPKRVPKQEVKPEVVEDDNNSAQAAELLRRVTERSLRKPKGEKKVAASQVAWMGGVVNSTRSNRFSNGFAGAYGSNTPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFMKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLSYQSETTESRGNKPNNKRGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274

[Close]

BLAST of BolC9t59558H-R vs. GenBank_protein
Match: KAF3569181.1 (hypothetical protein DY000_02019431, partial [Brassica cretica])

HSP 1 Score: 475 bits (1222), Expect = 3.420e-168
Identity = 243/245 (99.18%), Postives = 243/245 (99.18%), Query Frame = 0

Query:   30 VVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKPNNRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274
            VVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKP NRGGAEKAC LKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM
Sbjct:    2 VVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKPINRGGAEKACGLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 246

The following BLAST results are available for this feature:

BLAST of BolC9t59558H-R vs. GenBank_protein

BLAST of BolC9t59558H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
XP_013741386.1	1.830e-181	100.00	uncharacterized protein BNAC09G47140D isoform X1 [...	[more]
XP_013609501.1	7.130e-179	98.54	PREDICTED: uncharacterized protein LOC106316180 [B...	[more]
KAG5377129.1	1.010e-178	98.91	hypothetical protein IGI04_041725 [Brassica rapa s...	[more]
KAF3501990.1	1.440e-178	98.91	hypothetical protein F2Q69_00045178 [Brassica cret...	[more]
XP_009122511.1	4.120e-178	98.54	uncharacterized protein LOC103847203 isoform X1 [B...	[more]
RID42509.1	5.850e-178	98.18	hypothetical protein BRARA_J02387 [Brassica rapa]	[more]
CAF2354447.1	5.850e-178	97.81	unnamed protein product [Brassica napus]	[more]
XP_018443985.1	7.570e-172	96.00	PREDICTED: uncharacterized protein LOC108815941 is...	[more]
KAF8115716.1	8.510e-171	90.15	hypothetical protein N665_0025s0173 [Sinapis alba]	[more]
KAF3569181.1	3.420e-168	99.18	hypothetical protein DY000_02019431, partial [Bras...	[more]

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GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006383	transcription by RNA polymerase III
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity

InterPro

Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 264..274
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..32
None	No IPR available	PANTHER	PTHR13408:SF6	DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC4-LIKE ISOFORM X1	coord: 5..83 coord: 96..272
IPR007811	DNA-directed RNA polymerase III subunit RPC4	PFAM	PF05132	RNA_pol_Rpc4	coord: 172..264 e-value: 2.0E-21 score: 76.9
IPR007811	DNA-directed RNA polymerase III subunit RPC4	PANTHER	PTHR13408	DNA-DIRECTED RNA POLYMERASE III	coord: 5..83 coord: 96..272

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C9	contig	C9:59816424..59818216 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
Interproscan on OGS1.0	2022-03-19
Blast2go on OGS1.0	2022-03-19
Diamond on OGS1.0 vs NR	2022-03-19
Brassica oleracea HDEM OGS1.0	2018-11-02

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC9t59558H-R	BolC9t59558H-R	Brassica oleracea HDEM	mRNA	C9 59816424..59818216 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>BolC9t59558H-R-P ID=BolC9t59558H-R-P|Name=BolC9t59558H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=275bp
MEQKPPVRKMKFAPKAPPKRVPKPEVKPEVVEDDNNSAQAAELLRRVTER
SLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQ
EPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLAL
TEDSEEPKMLFMRLPAVPLANQSSATENRGSKPNNRGGAEKACDLKAASA
NGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCL
VGDVYKHAVLTPDIDSILKDIDNM.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007811	RPC4

Vocabulary: **Biological Process**
Term	Definition
GO:0006383	transcription by RNA polymerase III

Vocabulary: **Molecular Function**
Term	Definition
GO:0003899	DNA-directed 5'-3' RNA polymerase activity
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005666	RNA polymerase III complex

Orthology

View orthology data for BolC9t59558H-R-P