BolC9t59558H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolC9t59558H-R
Unique NameBolC9t59558H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length275
Homology
BLAST of BolC9t59558H-R vs. GenBank_protein
Match: XP_013741386.1 (uncharacterized protein BNAC09G47140D isoform X1 [Brassica napus] >CAF1788503.1 unnamed protein product [Brassica napus] >CDY21578.1 BnaC09g47140D [Brassica napus] >VDD34235.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 509 bits (1312), Expect = 1.830e-181
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0
Query:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKPNNRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274
            MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKPNNRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM
Sbjct:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKPNNRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274          
BLAST of BolC9t59558H-R vs. GenBank_protein
Match: XP_013609501.1 (PREDICTED: uncharacterized protein LOC106316180 [Brassica oleracea var. oleracea] >XP_013609502.1 PREDICTED: uncharacterized protein LOC106316180 [Brassica oleracea var. oleracea])

HSP 1 Score: 503 bits (1295), Expect = 7.130e-179
Identity = 270/274 (98.54%), Postives = 271/274 (98.91%), Query Frame = 0
Query:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKPNNRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274
            MEQKPPVRKMKFAPKAPXXXXXXXXXXXXV EDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAH SNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQS+ TENRGSKPNNRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM
Sbjct:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVAEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHSSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSATTENRGSKPNNRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274          
BLAST of BolC9t59558H-R vs. GenBank_protein
Match: KAG5377129.1 (hypothetical protein IGI04_041725 [Brassica rapa subsp. trilocularis] >VDD20343.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 503 bits (1294), Expect = 1.010e-178
Identity = 271/274 (98.91%), Postives = 272/274 (99.27%), Query Frame = 0
Query:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKPNNRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274
            MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQS+ATE RGSKPN RGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM
Sbjct:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSAATETRGSKPNIRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274          
BLAST of BolC9t59558H-R vs. GenBank_protein
Match: KAF3501990.1 (hypothetical protein F2Q69_00045178 [Brassica cretica])

HSP 1 Score: 502 bits (1293), Expect = 1.440e-178
Identity = 271/274 (98.91%), Postives = 271/274 (98.91%), Query Frame = 0
Query:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKPNNRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274
            MEQKPPVRKMKFAPKAPXXXXXXXXXXXX VEDDNNS QAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKP NRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM
Sbjct:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXXVEDDNNSEQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKPINRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274          
BLAST of BolC9t59558H-R vs. GenBank_protein
Match: XP_009122511.1 (uncharacterized protein LOC103847203 isoform X1 [Brassica rapa] >XP_013715571.1 uncharacterized protein LOC106419349 isoform X1 [Brassica napus])

HSP 1 Score: 501 bits (1290), Expect = 4.120e-178
Identity = 270/274 (98.54%), Postives = 271/274 (98.91%), Query Frame = 0
Query:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKPNNRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274
            MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSN PQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQS+ATE RGSKPN RGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM
Sbjct:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNVPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSAATETRGSKPNIRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274          
BLAST of BolC9t59558H-R vs. GenBank_protein
Match: RID42509.1 (hypothetical protein BRARA_J02387 [Brassica rapa])

HSP 1 Score: 501 bits (1289), Expect = 5.850e-178
Identity = 269/274 (98.18%), Postives = 271/274 (98.91%), Query Frame = 0
Query:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKPNNRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274
            MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSN PQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQS+ATE RGSKPN RGGAEKACDLKAASANGFMGKLLVYKSGA+KMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM
Sbjct:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNVPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSAATETRGSKPNIRGGAEKACDLKAASANGFMGKLLVYKSGAIKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274          
BLAST of BolC9t59558H-R vs. GenBank_protein
Match: CAF2354447.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 501 bits (1289), Expect = 5.850e-178
Identity = 268/274 (97.81%), Postives = 272/274 (99.27%), Query Frame = 0
Query:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKPNNRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274
            MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKD+GNHEEALNTAADL+LTEDSEEPKMLFMRLPAVPLANQS+ TENRGSKPN RGGAEKACDLKAASANGFMGKLLVYKSGA+KMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM
Sbjct:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDLGNHEEALNTAADLSLTEDSEEPKMLFMRLPAVPLANQSATTENRGSKPNIRGGAEKACDLKAASANGFMGKLLVYKSGAIKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274          
BLAST of BolC9t59558H-R vs. GenBank_protein
Match: XP_018443985.1 (PREDICTED: uncharacterized protein LOC108815941 isoform X1 [Raphanus sativus])

HSP 1 Score: 485 bits (1249), Expect = 7.570e-172
Identity = 264/275 (96.00%), Postives = 269/275 (97.82%), Query Frame = 0
Query:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAP-QEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKPNNRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274
            MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDN+SAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNS RSNRFS+GYAG +GSNAP QEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEF+KDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQS+ TE RGSKPNNRG AEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM
Sbjct:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNHSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSTRSNRFSSGYAGGYGSNAPPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFMKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSATTEARGSKPNNRGVAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 275          
BLAST of BolC9t59558H-R vs. GenBank_protein
Match: KAF8115716.1 (hypothetical protein N665_0025s0173 [Sinapis alba])

HSP 1 Score: 483 bits (1242), Expect = 8.510e-171
Identity = 247/274 (90.15%), Postives = 255/274 (93.07%), Query Frame = 0
Query:    1 MEQKPPVRKMKFAPKAPXXXXXXXXXXXXVVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKPNNRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274
            MEQKP VRKMKFAPKAP            VVEDDNNSAQAAELLRRVTERSLR+PKGEKKVAASQVAWMGGVVNS RSNRFSNG+AGA+GSN PQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEF+KDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPL+ QS  TE+RG+KPNN+ GAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM
Sbjct:    1 MEQKPTVRKMKFAPKAPPKRVPKQEVKPEVVEDDNNSAQAAELLRRVTERSLRKPKGEKKVAASQVAWMGGVVNSTRSNRFSNGFAGAYGSNTPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFMKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLSYQSETTESRGNKPNNKRGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274          
BLAST of BolC9t59558H-R vs. GenBank_protein
Match: KAF3569181.1 (hypothetical protein DY000_02019431, partial [Brassica cretica])

HSP 1 Score: 475 bits (1222), Expect = 3.420e-168
Identity = 243/245 (99.18%), Postives = 243/245 (99.18%), Query Frame = 0
Query:   30 VVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKPNNRGGAEKACDLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 274
            VVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKP NRGGAEKAC LKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM
Sbjct:    2 VVEDDNNSAQAAELLRRVTERSLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQEPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLALTEDSEEPKMLFMRLPAVPLANQSSATENRGSKPINRGGAEKACGLKAASANGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCLVGDVYKHAVLTPDIDSILKDIDNM 246          
The following BLAST results are available for this feature:
BLAST of BolC9t59558H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
XP_013741386.11.830e-181100.00uncharacterized protein BNAC09G47140D isoform X1 [... [more]
XP_013609501.17.130e-17998.54PREDICTED: uncharacterized protein LOC106316180 [B... [more]
KAG5377129.11.010e-17898.91hypothetical protein IGI04_041725 [Brassica rapa s... [more]
KAF3501990.11.440e-17898.91hypothetical protein F2Q69_00045178 [Brassica cret... [more]
XP_009122511.14.120e-17898.54uncharacterized protein LOC103847203 isoform X1 [B... [more]
RID42509.15.850e-17898.18hypothetical protein BRARA_J02387 [Brassica rapa][more]
CAF2354447.15.850e-17897.81unnamed protein product [Brassica napus][more]
XP_018443985.17.570e-17296.00PREDICTED: uncharacterized protein LOC108815941 is... [more]
KAF8115716.18.510e-17190.15hypothetical protein N665_0025s0173 [Sinapis alba][more]
KAF3569181.13.420e-16899.18hypothetical protein DY000_02019431, partial [Bras... [more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006383 transcription by RNA polymerase III
cellular_component GO:0005666 RNA polymerase III complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 264..274
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..32
NoneNo IPR availablePANTHERPTHR13408:SF6DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC4-LIKE ISOFORM X1coord: 5..83
coord: 96..272
IPR007811DNA-directed RNA polymerase III subunit RPC4PFAMPF05132RNA_pol_Rpc4coord: 172..264
e-value: 2.0E-21
score: 76.9
IPR007811DNA-directed RNA polymerase III subunit RPC4PANTHERPTHR13408DNA-DIRECTED RNA POLYMERASE IIIcoord: 5..83
coord: 96..272

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C9contigC9:59816424..59818216 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC9t59558H-RBolC9t59558H-RBrassica oleracea HDEMmRNAC9 59816424..59818216 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolC9t59558H-R-P ID=BolC9t59558H-R-P|Name=BolC9t59558H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=275bp
MEQKPPVRKMKFAPKAPPKRVPKPEVKPEVVEDDNNSAQAAELLRRVTER
SLRRPKGEKKVAASQVAWMGGVVNSARSNRFSNGYAGAHGSNAPQEISYQ
EPWDYYSYYPITLPLRRPNAGDPEVLDVDEFIKDVGNHEEALNTAADLAL
TEDSEEPKMLFMRLPAVPLANQSSATENRGSKPNNRGGAEKACDLKAASA
NGFMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMAVNTDEKNCCL
VGDVYKHAVLTPDIDSILKDIDNM.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007811RPC4
Vocabulary: Biological Process
TermDefinition
GO:0006383transcription by RNA polymerase III
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005666RNA polymerase III complex