BolC9t59317H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolC9t59317H-R
Unique NameBolC9t59317H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length78
Homology
BLAST of BolC9t59317H-R vs. GenBank_protein
Match: VDD33994.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 160 bits (404), Expect = 1.920e-49
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0
Query:    1 MEDYGCQRPYGGMQIQPYNGVPGTGDFRSYSASYVRDGDGEQHVRYEEGKIDREVEILGDNGPGAEEEEKGGELQDV 77
            MEDYGCQRPYGGMQIQPYNGVPGTGDFRSYSASYVRDGDGEQHVRYEEGKIDREVEILGDNGPGAEEEEKGGELQDV
Sbjct:    1 MEDYGCQRPYGGMQIQPYNGVPGTGDFRSYSASYVRDGDGEQHVRYEEGKIDREVEILGDNGPGAEEEEKGGELQDV 77          
BLAST of BolC9t59317H-R vs. GenBank_protein
Match: KAF3566080.1 (hypothetical protein DY000_02019198 [Brassica cretica])

HSP 1 Score: 79.0 bits (193), Expect = 6.150e-17
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0
Query:    1 MEDYGCQRPYGGMQIQPYNGVPGTGDFRSYSASY 34
            MEDYGCQRPYGGMQIQPYNGVPGTGDFRSYSASY
Sbjct:    1 MEDYGCQRPYGGMQIQPYNGVPGTGDFRSYSASY 34          
BLAST of BolC9t59317H-R vs. GenBank_protein
Match: CAF1786639.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 77.4 bits (189), Expect = 2.490e-16
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0
Query:    1 MEDYGCQRPYGGMQIQPYNGVPGTGDFRSYSASY 34
            MEDYGC+RPYGGMQIQPYNGVPGTGDFRSYSASY
Sbjct:    1 MEDYGCKRPYGGMQIQPYNGVPGTGDFRSYSASY 34          
BLAST of BolC9t59317H-R vs. GenBank_protein
Match: XP_013606802.1 (PREDICTED: uncharacterized protein LOC106313524 [Brassica oleracea var. oleracea] >XP_013720764.1 uncharacterized protein LOC106424545 [Brassica napus])

HSP 1 Score: 75.5 bits (184), Expect = 1.430e-15
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 0
Query:    1 MEDYGCQRPYGGMQIQPYNGVPGTGDFRSYSASY 34
            MEDYGCQRP GGMQIQPYNGVPGTGDFRSYSASY
Sbjct:    1 MEDYGCQRPCGGMQIQPYNGVPGTGDFRSYSASY 34          
BLAST of BolC9t59317H-R vs. GenBank_protein
Match: KAF2573615.1 (hypothetical protein F2Q70_00006269 [Brassica cretica])

HSP 1 Score: 77.4 bits (189), Expect = 1.930e-15
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 0
Query:    1 MEDYGCQRPYGGMQIQPYNGVPGTGDFRSYSASY 34
            MEDYGCQRPYGGMQIQPYNGVPGTGDFRSYS SY
Sbjct:    1 MEDYGCQRPYGGMQIQPYNGVPGTGDFRSYSTSY 34          
BLAST of BolC9t59317H-R vs. GenBank_protein
Match: XP_013727185.1 (uncharacterized protein BNAA10G20640D isoform X1 [Brassica napus] >XP_013727186.1 uncharacterized protein BNAA10G20640D isoform X2 [Brassica napus] >XP_022549321.1 uncharacterized protein LOC111201501 [Brassica napus] >RID42286.1 hypothetical protein BRARA_J02186 [Brassica rapa] >CAF2350401.1 unnamed protein product [Brassica napus])

HSP 1 Score: 68.9 bits (167), Expect = 5.380e-13
Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = 0
Query:    1 MEDYGCQRPYGGMQIQPYNGVPGTGDFRSYSASY 34
            MEDY  QRPYGGMQIQPYNG PGTGDFRSYSASY
Sbjct:    1 MEDYCSQRPYGGMQIQPYNGGPGTGDFRSYSASY 34          
BLAST of BolC9t59317H-R vs. GenBank_protein
Match: XP_009121895.1 (uncharacterized protein LOC103846677 [Brassica rapa])

HSP 1 Score: 66.2 bits (160), Expect = 6.180e-12
Identity = 30/34 (88.24%), Postives = 30/34 (88.24%), Query Frame = 0
Query:    1 MEDYGCQRPYGGMQIQPYNGVPGTGDFRSYSASY 34
            MEDY  QRPYGGMQIQPYNG PGTG FRSYSASY
Sbjct:    1 MEDYCSQRPYGGMQIQPYNGGPGTGGFRSYSASY 34          
BLAST of BolC9t59317H-R vs. GenBank_protein
Match: CAA7029992.1 (unnamed protein product [Microthlaspi erraticum] >CAA7039812.1 unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 65.5 bits (158), Expect = 1.120e-11
Identity = 29/35 (82.86%), Postives = 29/35 (82.86%), Query Frame = 0
Query:    1 MEDYGCQRPYGGMQIQPYNGVPGTGDFRSYSASYV 35
            MEDY  QRPYGGMQIQPY G PG GDFRSYSASY 
Sbjct:    1 MEDYARQRPYGGMQIQPYQGGPGAGDFRSYSASYA 35          
BLAST of BolC9t59317H-R vs. GenBank_protein
Match: XP_006399717.1 (uncharacterized protein LOC18019254 [Eutrema salsugineum] >ESQ41170.1 hypothetical protein EUTSA_v10015080mg [Eutrema salsugineum])

HSP 1 Score: 64.3 bits (155), Expect = 3.700e-11
Identity = 30/37 (81.08%), Postives = 31/37 (83.78%), Query Frame = 0
Query:    1 MEDYGCQRPYG--GMQIQPYNGVPGTGDFRSYSASYV 35
            MEDYG QRPYG  GMQIQPY+G PG GDFRSYSASY 
Sbjct:    1 MEDYGRQRPYGDGGMQIQPYHGAPGAGDFRSYSASYA 37          
BLAST of BolC9t59317H-R vs. GenBank_protein
Match: KFK25455.1 (hypothetical protein AALP_AA8G117500 [Arabis alpina])

HSP 1 Score: 62.8 bits (151), Expect = 1.390e-10
Identity = 31/38 (81.58%), Postives = 31/38 (81.58%), Query Frame = 0
Query:    1 MEDYGCQRPYGG---MQIQPYNGVPGTGDFRSYSASYV 35
            MEDYG QRPYGG   MQIQPYNG  G GDFRSYSASYV
Sbjct:    1 MEDYGRQRPYGGDGGMQIQPYNGEHGPGDFRSYSASYV 38          
The following BLAST results are available for this feature:
BLAST of BolC9t59317H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 15
Match NameE-valueIdentityDescription
VDD33994.11.920e-49100.00unnamed protein product [Brassica oleracea][more]
KAF3566080.16.150e-17100.00hypothetical protein DY000_02019198 [Brassica cret... [more]
CAF1786639.12.490e-1697.06unnamed protein product [Brassica napus][more]
XP_013606802.11.430e-1597.06PREDICTED: uncharacterized protein LOC106313524 [B... [more]
KAF2573615.11.930e-1597.06hypothetical protein F2Q70_00006269 [Brassica cret... [more]
XP_013727185.15.380e-1391.18uncharacterized protein BNAA10G20640D isoform X1 [... [more]
XP_009121895.16.180e-1288.24uncharacterized protein LOC103846677 [Brassica rap... [more]
CAA7029992.11.120e-1182.86unnamed protein product [Microthlaspi erraticum] >... [more]
XP_006399717.13.700e-1181.08uncharacterized protein LOC18019254 [Eutrema salsu... [more]
KFK25455.11.390e-1081.58hypothetical protein AALP_AA8G117500 [Arabis alpin... [more]

Pages

back to top
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..77

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C9contigC9:58310303..58310536 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC9t59317H-RBolC9t59317H-RBrassica oleracea HDEMmRNAC9 58310303..58310536 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolC9t59317H-R-P ID=BolC9t59317H-R-P|Name=BolC9t59317H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=78bp
MEDYGCQRPYGGMQIQPYNGVPGTGDFRSYSASYVRDGDGEQHVRYEEGK
IDREVEILGDNGPGAEEEEKGGELQDV.
back to top